diff --git a/python/ql/src/experimental/Security/CWE-089/SqlAlchemyInjection.qhelp b/python/ql/src/experimental/Security/CWE-089/SqlAlchemyInjection.qhelp
new file mode 100644
index 000000000000..8a23c5c6a59d
--- /dev/null
+++ b/python/ql/src/experimental/Security/CWE-089/SqlAlchemyInjection.qhelp
@@ -0,0 +1,36 @@
+<!DOCTYPE qhelp PUBLIC
+  "-//Semmle//qhelp//EN"
+  "qhelp.dtd">
+<qhelp>
+
+<overview>
+  <p>
+  Passing user-controlled sources into SQL queries used in SQLAlchemy methods can result in a SQL injection flaw.
+  This tainted SQL query containing a user-controlled source when passed into a SQLAlchemy method can execute a malicious query in a SQL database such as Postgres, MySQL, or SQLite.
+  </p>
+
+  <p>
+  Because a user-controlled source is passed into the query, the malicious user can have complete control over the query itself.
+  When the tainted query is executed, the malicious user can commit malicious actions such as bypassing role restrictions or accessing and modifying restricted data in the SQL database.
+  </p>
+</overview>
+
+<recommendation>
+  <p>
+  SQL injections can be prevented by escaping user-input's special characters that are passed into the SQL query from the user-supplied source.
+  Alternatively, using a sanitize library such as Sqlescapy will ensure that user-supplied sources can not act as a malicious query.
+  </p>
+<recommendation>
+
+<example>
+  <p>In the example below, the user-supplied source is passed to a SQLAlchemy method that queries the SQLite database.</p>
+  <sample src="SqlAlchemyInjection-Bad.py" />
+  <p> This can be fixed by using a sanitizer library like Sqlescapy as shown in this annotated code version below.</p>
+  <sample src="SqlAlchemyInjection-Good.py" />
+<example>
+
+<references>
+  <li>OWASP: <a href="https://owasp.org/www-community/attacks/SQL_Injection">SQL Injection</a></li>
+  <li>SQLAlchemy: <a href="https://docs.sqlalchemy.org/en/14/index.html">Documentation</a></li>
+</references>
+</qhelp>
diff --git a/python/ql/src/experimental/Security/CWE-089/SqlAlchemyInjection.ql b/python/ql/src/experimental/Security/CWE-089/SqlAlchemyInjection.ql
new file mode 100644
index 000000000000..bfca66259fc4
--- /dev/null
+++ b/python/ql/src/experimental/Security/CWE-089/SqlAlchemyInjection.ql
@@ -0,0 +1,19 @@
+/**
+ * @name SqlAlchemy Injection
+ * @description Building a SQL query from user-controlled sources is vulnerable to insertion of
+ *              malicious SQL code by the user in SQLAlchemy.
+ * @kind path-problem
+ * @problem.severity error
+ * @id python/sqlalchemy-injection
+ * @tags experimental
+ *       security
+ *       external/cwe/cwe-089
+ */
+
+import python
+import experimental.semmle.python.security.injection.SqlAlchemyInjection
+
+from DataFlow::PathNode source, DataFlow::PathNode sink, SqlAlchemyInjectionConfig sqlAlchemyInjectionConfig
+where sqlAlchemyInjectionConfig.hasFlowPath(source, sink)
+select sink, source, sink, "$@ SQL query contains an unsanitized $@", sink, "This", source,
+  "user-provided value"
diff --git a/python/ql/src/experimental/semmle/python/Concepts.qll b/python/ql/src/experimental/semmle/python/Concepts.qll
index 904b7967ee87..c15415e166c3 100644
--- a/python/ql/src/experimental/semmle/python/Concepts.qll
+++ b/python/ql/src/experimental/semmle/python/Concepts.qll
@@ -13,3 +13,17 @@ private import semmle.python.dataflow.new.DataFlow
 private import semmle.python.dataflow.new.RemoteFlowSources
 private import semmle.python.dataflow.new.TaintTracking
 private import experimental.semmle.python.Frameworks
+
+module SqlSanitizer {
+  abstract class Range extends DataFlow::Node {
+    abstract DataFlow::Node getSanitizerNode();
+  }
+}
+
+class SqlSanitizer extends DataFlow::Node {
+  SqlSanitizer::Range range;
+
+  SqlSanitizer() { this = range }
+
+  DataFlow::Node getSanitizerNode() { result = range.getSanitizerNode() }
+}
diff --git a/python/ql/src/experimental/semmle/python/frameworks/Stdlib.qll b/python/ql/src/experimental/semmle/python/frameworks/Stdlib.qll
index 420caf0d73bb..c3ce91ae7430 100644
--- a/python/ql/src/experimental/semmle/python/frameworks/Stdlib.qll
+++ b/python/ql/src/experimental/semmle/python/frameworks/Stdlib.qll
@@ -8,4 +8,71 @@ private import semmle.python.dataflow.new.DataFlow
 private import semmle.python.dataflow.new.TaintTracking
 private import semmle.python.dataflow.new.RemoteFlowSources
 private import experimental.semmle.python.Concepts
+private import semmle.python.Concepts
 private import semmle.python.ApiGraphs
+
+private module SQLAlchemy {
+  private class SqlAlchemyQuerySinkMethods extends string {
+    SqlAlchemyQuerySinkMethods() { this in [
+        "filter", "filter_by", "having", "group_by", "order_by"
+      ]
+    }
+  }
+
+  private API::Node sqlAlchemySessionInstance() {
+    result = API::moduleImport("sqlalchemy.orm").getMember("Session").getReturn() or
+    result = API::moduleImport("sqlalchemy.orm").getMember("sessionmaker").getReturn().getReturn()
+  }
+
+  private API::Node sqlAlchemyQueryInstance() {
+    result = sqlAlchemySessionInstance().getMember("query").getReturn()
+  }
+
+  private API::Node sqlAlchemyEngineInstance() {
+    result = API::moduleImport("sqlalchemy").getMember("create_engine").getReturn()
+  }
+
+  private class SqlAlchemyInjectionSink extends DataFlow::CallCfgNode, SqlExecution::Range {
+    DataFlow::Node sql;
+
+    SqlAlchemyInjectionSink() {
+      this in [
+        any(SqlAlchemyExecuteInjectionSink injectionSink)
+        any(SqlAlchemyQueryInjectionSink injectionSink)
+      ] and
+      sql = this.getArg(0)
+    }
+
+    override DataFlow::Node getSql() { result = sql }
+  }
+
+  private class SqlAlchemyExecuteInjectionSink extends DataFlow::Node {
+    SqlAlchemyExecuteInjectionSink() {
+      this in [
+        sqlAlchemySessionInstance().getMember("execute").getACall(),
+        sqlAlchemyEngineInstance().getMember("connect").getReturn().getMember("execute").getACall(),
+        sqlAlchemyEngineInstance().getMember("begin").getReturn().getMember("execute").getACall()
+      ] and
+      sql = this.getArg(0)
+    }
+  }
+
+  private class SqlAlchemyQueryInjectionSink extends DataFlow::Node {
+    SqlAlchemyQueryInjectionSink() {
+      this in [
+        sqlAlchemyQueryInstance().getMember(any(SqlAlchemyQuerySinkMethods sinkMethod)).getACall(),
+        sqlAlchemySessionInstance().getMember("scalar").getACall()
+      ] and
+      sql = this.getArg(0)
+    }
+  }
+
+  private class SqlSanitizerCall extends DataFlow::CallCfgNode, NoSQLSanitizer::Range {
+    SqlSanitizerCall() {
+      this =
+        API::moduleImport("sqlescapy").getMember("sqlescape").getACall()
+    }
+
+    override DataFlow::Node getSanitizerNode() { result = this.getArg(0) }
+  }
+}
diff --git a/python/ql/src/experimental/semmle/python/security/injection/SQLAlchemyInjection.qll b/python/ql/src/experimental/semmle/python/security/injection/SQLAlchemyInjection.qll
new file mode 100644
index 000000000000..32b98c5957d8
--- /dev/null
+++ b/python/ql/src/experimental/semmle/python/security/injection/SQLAlchemyInjection.qll
@@ -0,0 +1,19 @@
+import python
+import semmle.python.dataflow.new.DataFlow
+import semmle.python.dataflow.new.TaintTracking
+import experimental.semmle.python.Concepts
+import semmle.python.dataflow.new.RemoteFlowSources
+import semmle.python.ApiGraphs
+import experimental.semmle.python.frameworks.Stdlib
+
+class SqlAlchemyInjectionConfig extends TaintTracking::Configuration {
+  SqlAlchemyInjectionConfig() { this = "SqlAlchemyInjectionConfig" }
+
+  override predicate isSource(DataFlow::Node source) { source instanceof RemoteFlowSource }
+
+  override predicate isSink(DataFlow::Node sink) { sink instanceof SqlAlchemyInjectionSink }
+
+  override predicate isSanitizer(DataFlow::Node sanitizer) {
+    sanitizer = any(SqlSanitizer SqlSanitizer).getSanitizerNode()
+  }
+}
diff --git a/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_bad.py b/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_bad.py
new file mode 100644
index 000000000000..d5a6cf27e0ea
--- /dev/null
+++ b/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_bad.py
@@ -0,0 +1,33 @@
+import sqlalchemy
+from sqlalchemy import Column, Integer, String, ForeignKey, create_engine
+from sqlalchemy.ext.declarative import declarative_base
+from sqlalchemy.orm import relationship, backref, sessionmaker, joinedload
+from sqlalchemy.sql import text
+from sqlescapy import sqlescape
+
+
+engine = create_engine('sqlite:///:memory:', echo=True)
+Base = declarative_base()
+
+class User(Base):
+    __tablename__ = 'users'
+
+    id = Column(Integer, primary_key=True)
+    name = Column(String)
+
+Base.metadata.create_all(engine)
+
+Session = sessionmaker(bind=engine)
+session = Session()
+
+ed_user = User(name='ed')
+ed_user2 = User(name='george')
+
+session.add(ed_user)
+session.add(ed_user2)
+
+session.commit()
+
+malicious_user_input = sys.argv[1]
+malicious_user_input = text("name='{}'".format(malicious_user_input))
+session.query(User).filter(malicious_user_input).count()
diff --git a/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_flask_bad.py b/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_flask_bad.py
new file mode 100644
index 000000000000..eafdb67d877d
--- /dev/null
+++ b/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_flask_bad.py
@@ -0,0 +1,36 @@
+from flask import Flask, request
+from flask_sqlalchemy import SQLAlchemy
+import json
+from sqlalchemy.sql import text
+
+
+app = Flask(__name__)
+app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:///:memory:'
+app.config['SQLALCHEMY_ECHO'] = True
+db = SQLAlchemy(app)
+
+class User(db.Model):
+    uid = db.Column(db.Integer, primary_key=True, autoincrement=True)
+    email = db.Column(db.String(50))
+
+    def __init__(self, email):
+        self.email = email
+
+db.create_all()
+
+user1 = User(email='admin@example.com')
+user2 = User(email='admin2@example.com')
+db.session.add(user1)
+db.session.add(user2)
+db.session.commit()
+
+@app.route('/')
+def user_count():
+    user_info = json.loads(request.args['user_info'])
+    sql_query = "email='{}'".format(user_info['email'])
+    user_count = db.session.query(User).filter(sql_query).count()
+
+    return "Users found: {}".format(user_count)
+
+# if __name__ == '__main__':
+#     app.run(debug=True)
diff --git a/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_flask_good.py b/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_flask_good.py
new file mode 100644
index 000000000000..c871d1c8d259
--- /dev/null
+++ b/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_flask_good.py
@@ -0,0 +1,38 @@
+from flask import Flask, request
+from flask_sqlalchemy import SQLAlchemy
+import json
+from sqlalchemy.sql import text
+from sqlescapy import sqlescape
+
+
+app = Flask(__name__)
+app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:///:memory:'
+app.config['SQLALCHEMY_ECHO'] = True
+db = SQLAlchemy(app)
+
+class User(db.Model):
+    uid = db.Column(db.Integer, primary_key=True, autoincrement=True)
+    email = db.Column(db.String(50))
+
+    def __init__(self, email):
+        self.email = email
+
+db.create_all()
+
+user1 = User(email='admin@example.com')
+user2 = User(email='admin2@example.com')
+db.session.add(user1)
+db.session.add(user2)
+db.session.commit()
+
+@app.route('/')
+def user_count():
+    user_info = json.loads(request.args['user_info'])
+    sanitized_input = sqlescape(user_info['email']))
+    sql_query = "email='{}'".format(sanitized_input)
+    user_count = db.session.query(User).filter(sql_query).count()
+
+    return "Users found: {}".format(user_count)
+
+# if __name__ == '__main__':
+#     app.run(debug=True)
diff --git a/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_good.py b/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_good.py
new file mode 100644
index 000000000000..08de4264181c
--- /dev/null
+++ b/python/ql/test/experimental/query-tests/Security/CWE-089/sqlalchemy_good.py
@@ -0,0 +1,37 @@
+import sqlalchemy
+from sqlalchemy import Column, Integer, String, ForeignKey, create_engine
+from sqlalchemy.ext.declarative import declarative_base
+from sqlalchemy.orm import relationship, backref, sessionmaker, joinedload
+from sqlalchemy.sql import text
+from sqlescapy import sqlescape
+
+
+engine = create_engine('sqlite:///:memory:', echo=True)
+Base = declarative_base()
+
+class User(Base):
+    __tablename__ = 'users'
+
+    id = Column(Integer, primary_key=True)
+    name = Column(String)
+
+Base.metadata.create_all(engine)
+
+Session = sessionmaker(bind=engine)
+session = Session()
+
+ed_user = User(name='ed')
+ed_user2 = User(name='george')
+
+session.add(ed_user)
+session.add(ed_user2)
+
+session.commit()
+
+
+malicious_user_input = sys.argv[1]
+escaped_input = sqlescape(malicious_user_input)
+sql_text = "name='{}'".format(escaped_input)
+sql_query = text(sql_text)
+
+session.query(User).filter(malicious_user_input).count()