diff --git a/GVFS/GVFS.Build/GVFS.props b/GVFS/GVFS.Build/GVFS.props
index 83b66693a1..1f5f2ce1b1 100644
--- a/GVFS/GVFS.Build/GVFS.props
+++ b/GVFS/GVFS.Build/GVFS.props
@@ -3,7 +3,7 @@
 
   <PropertyGroup Label="Parameters">
     <GVFSVersion>0.2.173.2</GVFSVersion>
-    <GitPackageVersion>2.20200420.2</GitPackageVersion>
+    <GitPackageVersion>2.20200601.2</GitPackageVersion>
   </PropertyGroup>
 
   <PropertyGroup Label="DefaultSettings">
diff --git a/GVFS/GVFS.Common/Git/GitProcess.cs b/GVFS/GVFS.Common/Git/GitProcess.cs
index 6fd4587ded..65d11a327a 100644
--- a/GVFS/GVFS.Common/Git/GitProcess.cs
+++ b/GVFS/GVFS.Common/Git/GitProcess.cs
@@ -667,7 +667,7 @@ public Result MultiPackIndexExpire(string gitObjectDirectory)
 
         public Result MultiPackIndexRepack(string gitObjectDirectory, string batchSize)
         {
-            return this.InvokeGitAgainstDotGitFolder($"-c pack.threads=1 multi-pack-index repack --object-dir=\"{gitObjectDirectory}\" --batch-size={batchSize} --no-progress");
+            return this.InvokeGitAgainstDotGitFolder($"-c pack.threads=1 -c repack.packKeptObjects=true multi-pack-index repack --object-dir=\"{gitObjectDirectory}\" --batch-size={batchSize} --no-progress");
         }
 
         public Process GetGitProcess(string command, string workingDirectory, string dotGitDirectory, bool useReadObjectHook, bool redirectStandardError, string gitObjectsDirectory)
diff --git a/GVFS/GVFS.FunctionalTests/Tests/GitCommands/ResetMixedTests.cs b/GVFS/GVFS.FunctionalTests/Tests/GitCommands/ResetMixedTests.cs
index 2d1e727a8a..106bd24ea5 100644
--- a/GVFS/GVFS.FunctionalTests/Tests/GitCommands/ResetMixedTests.cs
+++ b/GVFS/GVFS.FunctionalTests/Tests/GitCommands/ResetMixedTests.cs
@@ -78,19 +78,6 @@ public void ResetMixedThenCheckoutWithConflicts()
             this.FilesShouldMatchCheckoutOfTargetBranch();
         }
 
-        [TestCase]
-        public void ResetMixedOnlyAddedThenCheckoutWithConflicts()
-        {
-            this.ValidateGitCommand("checkout " + GitRepoTests.ConflictTargetBranch);
-            this.ValidateGitCommand("reset --mixed HEAD~1");
-
-            // This will reset all the files except the files that were added
-            // and are untracked to make sure we error out with those using sparse-checkout
-            this.ValidateGitCommand("checkout -f");
-            this.ValidateGitCommand("checkout " + GitRepoTests.ConflictSourceBranch);
-            this.FilesShouldMatchCheckoutOfTargetBranch();
-        }
-
         [TestCase]
         public void ResetMixedAndCheckoutFile()
         {
diff --git a/GVFS/GVFS.UnitTests/Maintenance/PackfileMaintenanceStepTests.cs b/GVFS/GVFS.UnitTests/Maintenance/PackfileMaintenanceStepTests.cs
index ce90b736c6..c9e0f89391 100644
--- a/GVFS/GVFS.UnitTests/Maintenance/PackfileMaintenanceStepTests.cs
+++ b/GVFS/GVFS.UnitTests/Maintenance/PackfileMaintenanceStepTests.cs
@@ -26,7 +26,7 @@ public class PackfileMaintenanceStepTests
         private string ExpireCommand => $"multi-pack-index expire --object-dir=\"{this.context.Enlistment.GitObjectsRoot}\" --no-progress";
         private string VerifyCommand => $"-c core.multiPackIndex=true multi-pack-index verify --object-dir=\"{this.context.Enlistment.GitObjectsRoot}\" --no-progress";
         private string WriteCommand => $"-c core.multiPackIndex=true multi-pack-index write --object-dir=\"{this.context.Enlistment.GitObjectsRoot}\" --no-progress";
-        private string RepackCommand => $"-c pack.threads=1 multi-pack-index repack --object-dir=\"{this.context.Enlistment.GitObjectsRoot}\" --batch-size=2g --no-progress";
+        private string RepackCommand => $"-c pack.threads=1 -c repack.packKeptObjects=true multi-pack-index repack --object-dir=\"{this.context.Enlistment.GitObjectsRoot}\" --batch-size=2g --no-progress";
 
         [TestCase]
         public void PackfileMaintenanceIgnoreTimeRestriction()