diff --git a/doc/install/pre_install.rst b/doc/install/pre_install.rst index f21cadab628..4a5953062f4 100644 --- a/doc/install/pre_install.rst +++ b/doc/install/pre_install.rst @@ -28,10 +28,27 @@ Overview of the MNE tools suite - :doc:`MNE-CPP <../mne_cpp>` provides core MNE functionality implemented in C++ and is primarily intended for embedded and real-time applications. -There are also Python tools for easily importing MEG data from the Human -Connectome Project for use with MNE-Python (`MNE-HCP`_), and tools for -managing MNE projects so that they comply with the -`Brain Imaging Data Structure`_ specification (`MNE-BIDS`_). +There is also a growing ecosystem of other Python packages that work alongside +MNE-Python, including packages for: + +- a graphical user interface for MNE-Python (`MNELAB`_) +- easily importing MEG data from the Human Connectome Project for + use with MNE-Python (`MNE-HCP`_) +- managing MNE projects so that they comply with the `Brain + Imaging Data Structure`_ specification (`MNE-BIDS`_) +- automatic bad channel detection and interpolation (`autoreject`_) +- convolutional sparse dictionary learning and waveform shape estimation + (`alphaCSC`_) +- independent component analysis (ICA) with good performance on real data + (`PICARD`_) +- phase-amplitude coupling (`pactools`_) +- representational similarity analysis (`rsa`_) +- microstate analysis (`microstate`_) +- connectivity analysis using dynamic imaging of coherent sources (DICS) + (`conpy`_) +- general-purpose statistical analysis of M/EEG data (`eelbrain`_) +- post-hoc modification of linear models (`posthoc`_) + What should I install? ^^^^^^^^^^^^^^^^^^^^^^ @@ -69,3 +86,17 @@ simplify your example script to only the elements necessary to replicate the bug. **Next:** :doc:`mne_python` + + +.. LINKS: + +.. _MNELAB: https://github.com/cbrnr/mnelab +.. _autoreject: https://autoreject.github.io/ +.. _alphaCSC: https://alphacsc.github.io/ +.. _picard: https://pierreablin.github.io/picard/ +.. _pactools: https://pactools.github.io/ +.. _rsa: https://github.com/wmvanvliet/rsa +.. _microstate: https://github.com/wmvanvliet/mne_microstates +.. _conpy: https://aaltoimaginglanguage.github.io/conpy/ +.. _eelbrain: https://eelbrain.readthedocs.io/en/stable/index.html +.. _posthoc: https://users.aalto.fi/~vanvlm1/posthoc/python/