From 0e74eb59bbdecc80de08d04b26b7b0242890b582 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Mon, 25 Sep 2023 14:33:48 -0700 Subject: [PATCH 1/2] Remove unnecessary nextstrain update MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit This was only in place because the conda runtime might not have have resolved to the latest runtime version during setup. That is no longer the case¹. ¹ https://github.com/nextstrain/cli/commit/960decbccdf91546c8c213f9fafcff23a74f3c13 --- actions/setup-nextstrain-cli/action.yaml | 4 ---- 1 file changed, 4 deletions(-) diff --git a/actions/setup-nextstrain-cli/action.yaml b/actions/setup-nextstrain-cli/action.yaml index facfa42..76736c6 100644 --- a/actions/setup-nextstrain-cli/action.yaml +++ b/actions/setup-nextstrain-cli/action.yaml @@ -65,9 +65,5 @@ runs: env: runtime: ${{ inputs.runtime }} - - run: nextstrain update - shell: bash - continue-on-error: true - - run: nextstrain version --verbose shell: bash From da9ef25fbc57e775c59e8e54158ef9482feae633 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Mon, 25 Sep 2023 14:35:38 -0700 Subject: [PATCH 2/2] pathogen-repo-ci: Update ref for setup-nextstrain-cli --- .github/workflows/pathogen-repo-ci.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pathogen-repo-ci.yaml b/.github/workflows/pathogen-repo-ci.yaml index 60fd2ab..94039c2 100644 --- a/.github/workflows/pathogen-repo-ci.yaml +++ b/.github/workflows/pathogen-repo-ci.yaml @@ -229,7 +229,7 @@ jobs: # future changes to setup-nextstrain-cli. # # -trs, 28 April 2022 - - uses: nextstrain/.github/actions/setup-nextstrain-cli@1fbb3f2e3bf29374d2706f720f65d4025853a89a + - uses: nextstrain/.github/actions/setup-nextstrain-cli@0e74eb59bbdecc80de08d04b26b7b0242890b582 with: runtime: ${{ matrix.runtime }} # Consider parameterizing the Python version. -trs, 1 April 2022