-
Notifications
You must be signed in to change notification settings - Fork 55
Expand file tree
/
Copy pathRecordComponent.cpp
More file actions
1066 lines (976 loc) · 34.5 KB
/
RecordComponent.cpp
File metadata and controls
1066 lines (976 loc) · 34.5 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
/* Copyright 2017-2025 Fabian Koller, Axel Huebl, Franz Poeschel, Junmin Gu
*
* This file is part of openPMD-api.
*
* openPMD-api is free software: you can redistribute it and/or modify
* it under the terms of of either the GNU General Public License or
* the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* openPMD-api is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License and the GNU Lesser General Public License
* for more details.
*
* You should have received a copy of the GNU General Public License
* and the GNU Lesser General Public License along with openPMD-api.
* If not, see <http://www.gnu.org/licenses/>.
*/
#include "openPMD/RecordComponent.hpp"
#include "openPMD/Dataset.hpp"
#include "openPMD/DatatypeHelpers.hpp"
#include "openPMD/Error.hpp"
#include "openPMD/IO/Format.hpp"
#include "openPMD/Series.hpp"
#include "openPMD/auxiliary/Environment.hpp"
#include "openPMD/auxiliary/Memory.hpp"
#include "openPMD/auxiliary/StringManip.hpp"
#include "openPMD/backend/Attributable.hpp"
#include "openPMD/backend/BaseRecord.hpp"
#include "openPMD/backend/Variant_internal.hpp"
// comment so clang-format does not move this
#include "openPMD/DatatypeMacros.hpp"
#include <algorithm>
#include <climits>
#include <complex>
#include <iostream>
#include <sstream>
#include <stdexcept>
namespace openPMD
{
namespace internal
{
RecordComponentData::RecordComponentData() = default;
auto RecordComponentData::push_chunk(IOTask &&task) -> void
{
Attributable a;
a.setData(std::shared_ptr<AttributableData>{this, [](auto const &) {}});
// this check can be too costly in some setups
#if openPMD_USE_INVASIVE_TESTS
auto maybe_an_iteration = a.containingIteration().first;
if (!maybe_an_iteration.has_value())
{
throw std::runtime_error(
"Trying to write to/read from a RecordComponent that is not "
"contained by any Iteration.");
}
auto &iterationData = *maybe_an_iteration.value();
auto iteration = iterationData.asInternalCopyOf<Iteration>();
if (iteration.closed() && !iterationData.allow_reopening_implicitly)
{
throw std::runtime_error(
"Cannot write/read chunks to/from closed Iterations.");
}
#endif
a.setDirtyRecursive(true);
m_chunks.push(std::move(task));
}
static constexpr char const *note_on_deactivating_this_check = R"(
Note: In order to ignore inconsistent / incomplete extent definitions,
set the environment variable OPENPMD_VERIFY_HOMOGENEOUS_EXTENTS=0
or alternatively the JSON option {"verify_homogeneous_extents": false}.
)";
HomogenizeExtents::HomogenizeExtents() = default;
HomogenizeExtents::HomogenizeExtents(bool verify_homogeneous_extents_in)
: verify_homogeneous_extents(verify_homogeneous_extents_in)
{}
void HomogenizeExtents::check_extent(
Attributable const &callsite, RecordComponent &rc)
{
auto extent = rc.getExtent();
if (Dataset::undefinedExtent(extent))
{
without_extent.emplace_back(rc);
}
else if (retrieved_extent.has_value())
{
if (verify_homogeneous_extents && extent != *retrieved_extent)
{
std::stringstream error_msg;
error_msg << "Inconsistent extents found for Record '"
<< callsite.myPath().openPMDPath() << "': Component '"
<< rc.myPath().openPMDPath() << "' has extent";
auxiliary::write_vec_to_stream(error_msg, extent) << ", but ";
auxiliary::write_vec_to_stream(error_msg, *retrieved_extent)
<< " was found previously."
<< note_on_deactivating_this_check;
throw error::ReadError(
error::AffectedObject::Group,
error::Reason::UnexpectedContent,
std::nullopt,
error_msg.str());
}
}
else
{
retrieved_extent = std::move(extent);
}
}
auto HomogenizeExtents::merge(
Attributable const &callsite, HomogenizeExtents other)
-> HomogenizeExtents &
{
if (retrieved_extent.has_value() && other.retrieved_extent.has_value())
{
if (verify_homogeneous_extents &&
*retrieved_extent != *other.retrieved_extent)
{
std::stringstream error_msg;
error_msg << "Inconsistent extents found for Record '"
<< callsite.myPath().openPMDPath() << "': ";
auxiliary::write_vec_to_stream(error_msg, *retrieved_extent)
<< " vs. ";
auxiliary::write_vec_to_stream(
error_msg, *other.retrieved_extent)
<< "." << note_on_deactivating_this_check;
throw error::ReadError(
error::AffectedObject::Group,
error::Reason::UnexpectedContent,
std::nullopt,
error_msg.str());
}
}
else if (!retrieved_extent.has_value())
{
retrieved_extent = std::move(other.retrieved_extent);
}
for (auto &rc : other.without_extent)
{
this->without_extent.emplace_back(std::move(rc));
}
return *this;
}
void HomogenizeExtents::homogenize(Attributable const &callsite) &&
{
if (!retrieved_extent.has_value())
{
if (verify_homogeneous_extents)
{
throw error::ReadError(
error::AffectedObject::Group,
error::Reason::UnexpectedContent,
std::nullopt,
"No extent found for any component contained in '" +
callsite.myPath().openPMDPath() + "'." +
note_on_deactivating_this_check);
}
else
{
return;
}
}
auto &ext = *retrieved_extent;
for (auto &rc : without_extent)
{
rc.setWritten(false, Attributable::EnqueueAsynchronously::No);
rc.resetDataset(Dataset(Datatype::UNDEFINED, ext));
rc.setWritten(true, Attributable::EnqueueAsynchronously::No);
}
without_extent.clear();
}
} // namespace internal
template <typename T>
auto resource(T &t) -> attribute_types &
{
return t.template resource<attribute_types>();
}
RecordComponent::RecordComponent() : BaseRecordComponent(NoInit())
{
setData(std::make_shared<Data_t>());
}
RecordComponent::RecordComponent(NoInit) : BaseRecordComponent(NoInit())
{}
RecordComponent::RecordComponent(BaseRecord<RecordComponent> const &baseRecord)
: BaseRecordComponent(NoInit())
{
setData(baseRecord.m_recordComponentData);
}
// We need to instantiate this somewhere otherwise there might be linker issues
// despite this thing actually being constepxr
constexpr char const *const RecordComponent::SCALAR;
RecordComponent &RecordComponent::setUnitSI(double usi)
{
setAttribute("unitSI", usi);
return *this;
}
RecordComponent &RecordComponent::resetDataset(Dataset d)
{
auto &rc = get();
if (written())
{
if (!rc.m_dataset.has_value())
{
throw error::Internal(
"Internal control flow error: Written record component must "
"have defined datatype and extent.");
}
if (d.dtype == Datatype::UNDEFINED)
{
d.dtype = rc.m_dataset.value().dtype;
}
else if (d.dtype != rc.m_dataset.value().dtype)
{
throw std::runtime_error(
"Cannot change the datatype of a dataset.");
}
rc.m_hasBeenExtended = true;
}
if (d.extent.empty())
throw std::runtime_error("Dataset extent must be at least 1D.");
if (d.empty())
{
if (d.extent.empty())
{
throw error::Internal(
"A zero-dimensional dataset is not to be considered empty, but "
"undefined. This error is an internal safeguard against future "
"changes that might not consider this.");
}
else if (d.dtype != Datatype::UNDEFINED)
{
return makeEmpty(std::move(d));
}
else
{
rc.m_dataset = std::move(d);
return *this;
}
}
rc.m_isEmpty = false;
if (written())
{
if (!rc.m_dataset.has_value())
{
throw error::Internal(
"Internal control flow error: Written record component must "
"have defined datatype and extent.");
}
rc.m_dataset.value().extend(std::move(d.extent));
}
else
{
rc.m_dataset = std::move(d);
}
setDirty(true);
return *this;
}
uint8_t RecordComponent::getDimensionality() const
{
auto &rc = get();
if (rc.m_dataset.has_value())
{
return rc.m_dataset.value().rank;
}
else
{
return 1;
}
}
Extent RecordComponent::getExtent() const
{
auto &rc = get();
if (rc.m_dataset.has_value())
{
return rc.m_dataset.value().extent;
}
else
{
return {Dataset::UNDEFINED_EXTENT};
}
}
namespace detail
{
struct MakeEmpty
{
template <typename T>
static RecordComponent &call(RecordComponent &rc, uint8_t dimensions)
{
return rc.makeEmpty<T>(dimensions);
}
template <unsigned int N>
static RecordComponent &call(RecordComponent &, uint8_t)
{
throw std::runtime_error(
"RecordComponent::makeEmpty: Unknown datatype.");
}
};
} // namespace detail
RecordComponent &RecordComponent::makeEmpty(Datatype dt, uint8_t dimensions)
{
return switchType<detail::MakeEmpty>(dt, *this, dimensions);
}
RecordComponent &RecordComponent::makeEmpty(Dataset d)
{
auto &rc = get();
if (written())
{
if (!rc.m_dataset.has_value())
{
throw error::Internal(
"Internal control flow error: Written record component must "
"have defined datatype and extent.");
}
if (!constant())
{
throw std::runtime_error(
"An empty record component's extent can only be changed"
" in case it has been initialized as an empty or constant"
" record component.");
}
if (d.dtype == Datatype::UNDEFINED)
{
d.dtype = rc.m_dataset.value().dtype;
}
else if (d.dtype != rc.m_dataset.value().dtype)
{
throw std::runtime_error(
"Cannot change the datatype of a dataset.");
}
rc.m_dataset.value().extend(std::move(d.extent));
rc.m_hasBeenExtended = true;
}
else
{
rc.m_dataset = std::move(d);
}
if (rc.m_dataset.value().extent.size() == 0)
throw std::runtime_error("Dataset extent must be at least 1D.");
rc.m_isEmpty = true;
setDirty(true);
if (!written())
{
switchType<detail::DefaultValue<RecordComponent>>(
rc.m_dataset.value().dtype, *this);
}
return *this;
}
bool RecordComponent::empty() const
{
return get().m_isEmpty;
}
void RecordComponent::flush(
std::string const &name, internal::FlushParams const &flushParams)
{
if (!dirtyRecursive())
{
return;
}
auto &rc = get();
if (flushParams.flushLevel == FlushLevel::SkeletonOnly)
{
return;
}
if (access::readOnly(IOHandler()->m_frontendAccess))
{
while (!rc.m_chunks.empty())
{
IOHandler()->enqueue(rc.m_chunks.front());
rc.m_chunks.pop();
}
}
else
{
/*
* This catches when a user forgets to use resetDataset.
*/
if (!rc.m_dataset.has_value())
{
// The check for !written() is technically not needed, just
// defensive programming against internal bugs that go on us.
if (!written() && rc.m_chunks.empty() && !rc.m_isConstant)
{
// No data written yet, just accessed the object so far without
// doing anything
// Just do nothing and skip this record component.
return;
}
else
{
throw error::WrongAPIUsage(
"[RecordComponent] Must specify dataset type and extent "
"before flushing or setting a constant value (see "
"RecordComponent::resetDataset()).");
}
}
if (!containsAttribute("unitSI"))
{
setUnitSI(1);
}
auto constant_component_write_shape = [&]() {
auto extent = getExtent();
return !Dataset::undefinedExtent(extent) &&
std::none_of(extent.begin(), extent.end(), [](auto val) {
return val == Dataset::JOINED_DIMENSION;
});
};
if (!written())
{
if (constant())
{
bool isVBased = retrieveSeries().iterationEncoding() ==
IterationEncoding::variableBased;
Parameter<Operation::CREATE_PATH> pCreate;
pCreate.path = name;
IOHandler()->enqueue(IOTask(this, pCreate));
Parameter<Operation::WRITE_ATT> aWrite;
aWrite.name = "value";
aWrite.dtype = rc.m_constantValue.dtype;
aWrite.m_resource = rc.m_constantValue.getAny();
if (isVBased)
{
aWrite.changesOverSteps = Parameter<
Operation::WRITE_ATT>::ChangesOverSteps::IfPossible;
}
IOHandler()->enqueue(IOTask(this, aWrite));
if (constant_component_write_shape())
{
aWrite.name = "shape";
Attribute a(getExtent());
aWrite.dtype = a.dtype;
aWrite.m_resource = a.getAny();
if (isVBased)
{
aWrite.changesOverSteps = Parameter<
Operation::WRITE_ATT>::ChangesOverSteps::IfPossible;
}
IOHandler()->enqueue(IOTask(this, aWrite));
}
}
else
{
Parameter<Operation::CREATE_DATASET> dCreate(
rc.m_dataset.value());
dCreate.name = name;
IOHandler()->enqueue(IOTask(this, dCreate));
}
}
if (rc.m_hasBeenExtended)
{
if (constant())
{
if (!constant_component_write_shape())
{
throw error::WrongAPIUsage(
"Extended constant component from a previous shape to "
"one that cannot be written (empty or with joined "
"dimension).");
}
bool isVBased = retrieveSeries().iterationEncoding() ==
IterationEncoding::variableBased;
Parameter<Operation::WRITE_ATT> aWrite;
aWrite.name = "shape";
Attribute a(getExtent());
aWrite.dtype = a.dtype;
aWrite.m_resource = a.getAny();
if (isVBased)
{
aWrite.changesOverSteps = Parameter<
Operation::WRITE_ATT>::ChangesOverSteps::IfPossible;
}
IOHandler()->enqueue(IOTask(this, aWrite));
}
else
{
Parameter<Operation::EXTEND_DATASET> pExtend(
rc.m_dataset.value().extent);
IOHandler()->enqueue(IOTask(this, std::move(pExtend)));
rc.m_hasBeenExtended = false;
}
}
while (!rc.m_chunks.empty())
{
IOHandler()->enqueue(rc.m_chunks.front());
rc.m_chunks.pop();
}
flushAttributes(flushParams);
}
if (flushParams.flushLevel != FlushLevel::SkeletonOnly)
{
setDirty(false);
}
}
void RecordComponent::read(bool require_unit_si)
{
readBase(require_unit_si);
}
namespace
{
struct MakeConstant
{
template <typename T>
static void call(RecordComponent rc, Attribute const &attr)
{
rc.makeConstant(attr.get<T>());
}
template <unsigned n, typename... Args>
static void call(Args &&...)
{
throw error::ReadError(
error::AffectedObject::Attribute,
error::Reason::UnexpectedContent,
{},
"Undefined constant datatype.");
}
};
} // namespace
void RecordComponent::readBase(bool require_unit_si)
{
using DT = Datatype;
auto &rc = get();
readAttributes(ReadMode::FullyReread);
auto read_constant = [&]() {
Attribute a = rc.readAttribute("value");
DT dtype = a.dtype;
setWritten(false, Attributable::EnqueueAsynchronously::No);
switchNonVectorType<MakeConstant>(dtype, *this, a);
setWritten(true, Attributable::EnqueueAsynchronously::No);
if (!containsAttribute("shape"))
{
setWritten(false, Attributable::EnqueueAsynchronously::No);
resetDataset(Dataset(dtype, {Dataset::UNDEFINED_EXTENT}));
setWritten(true, Attributable::EnqueueAsynchronously::No);
return;
}
a = rc.attributes().at("shape");
Extent e;
// uint64_t check
if (auto val = a.getOptional<std::vector<uint64_t>>(); val.has_value())
for (auto const &shape : val.value())
e.push_back(shape);
else
{
std::ostringstream oss;
oss << "Unexpected datatype (" << a.dtype
<< ") for attribute 'shape' (" << determineDatatype<uint64_t>()
<< " aka uint64_t)";
throw error::ReadError(
error::AffectedObject::Attribute,
error::Reason::UnexpectedContent,
{},
oss.str());
}
setWritten(false, Attributable::EnqueueAsynchronously::No);
resetDataset(Dataset(dtype, e));
setWritten(true, Attributable::EnqueueAsynchronously::No);
};
if (constant() && !empty())
{
read_constant();
}
if (require_unit_si)
{
if (!containsAttribute("unitSI"))
{
throw error::ReadError(
error::AffectedObject::Attribute,
error::Reason::NotFound,
{},
"Attribute unitSI required for record components, not found in "
"'" +
myPath().openPMDPath() + "'.");
}
if (auto attr = getAttribute("unitSI");
!attr.getOptional<double>().has_value())
{
throw error::ReadError(
error::AffectedObject::Attribute,
error::Reason::UnexpectedContent,
{},
"Unexpected Attribute datatype for 'unitSI' (expected double, "
"found " +
datatypeToString(attr.dtype) + ") in '" +
myPath().openPMDPath() + "'.");
}
}
}
void RecordComponent::storeChunk(
auxiliary::WriteBuffer buffer, Datatype dtype, Offset o, Extent e)
{
verifyChunk(dtype, o, e);
Parameter<Operation::WRITE_DATASET> dWrite;
dWrite.offset = std::move(o);
dWrite.extent = std::move(e);
dWrite.dtype = dtype;
/* std::static_pointer_cast correctly reference-counts the pointer */
dWrite.data = std::move(buffer);
auto &rc = get();
rc.push_chunk(IOTask(this, std::move(dWrite)));
}
void RecordComponent::verifyChunk(
Datatype dtype, Offset const &o, Extent const &e) const
{
if (constant())
throw std::runtime_error(
"Chunks cannot be written for a constant RecordComponent.");
if (empty())
throw std::runtime_error(
"Chunks cannot be written for an empty RecordComponent.");
if (!isSame(dtype, getDatatype()))
{
std::ostringstream oss;
oss << "Datatypes of chunk data (" << dtype
<< ") and record component (" << getDatatype() << ") do not match.";
throw std::runtime_error(oss.str());
}
uint8_t dim = getDimensionality();
Extent dse = getExtent();
if (auto jd = joinedDimension(); jd.has_value())
{
if (o.size() != 0)
{
std::ostringstream oss;
oss << "Joined array: Must specify an empty offset (given: "
<< "offset=" << o.size() << "D, "
<< "extent=" << e.size() << "D).";
throw std::runtime_error(oss.str());
}
if (e.size() != dim)
{
std::ostringstream oss;
oss << "Joined array: Dimensionalities of chunk extent and dataset "
"extent must be equivalent (given: "
<< "offset=" << o.size() << "D, "
<< "extent=" << e.size() << "D).";
throw std::runtime_error(oss.str());
}
for (size_t i = 0; i < dim; ++i)
{
if (i != jd.value() && e[i] != dse[i])
{
throw std::runtime_error(
"Joined array: Chunk extent on non-joined dimensions must "
"be equivalent to dataset extents (Dimension on index " +
std::to_string(i) + ". DS: " + std::to_string(dse[i]) +
" - Chunk: " + std::to_string(o[i] + e[i]) + ")");
}
}
}
else
{
if (e.size() != dim || o.size() != dim)
{
std::ostringstream oss;
oss << "Dimensionality of chunk ("
<< "offset=" << o.size() << "D, "
<< "extent=" << e.size() << "D) "
<< "and record component (" << int(dim) << "D) "
<< "do not match.";
throw std::runtime_error(oss.str());
}
for (uint8_t i = 0; i < dim; ++i)
if (dse[i] < o[i] + e[i])
throw std::runtime_error(
"Chunk does not reside inside dataset (Dimension on "
"index " +
std::to_string(i) + ". DS: " + std::to_string(dse[i]) +
" - Chunk: " + std::to_string(o[i] + e[i]) + ")");
}
}
namespace
{
struct LoadChunkVariant
{
template <typename T>
static RecordComponent::shared_ptr_dataset_types
call(RecordComponent &rc, Offset o, Extent e)
{
return rc.loadChunk<T>(std::move(o), std::move(e));
}
};
} // namespace
auto RecordComponent::loadChunkVariant(Offset o, Extent e)
-> shared_ptr_dataset_types
{
return visit<LoadChunkVariant>(std::move(o), std::move(e));
}
template <typename T>
RecordComponent &RecordComponent::makeConstant(T value)
{
if (written())
throw std::runtime_error(
"A recordComponent can not (yet) be made constant after it has "
"been written.");
auto &rc = get();
rc.m_constantValue = Attribute(value);
rc.m_isConstant = true;
return *this;
}
template <typename T>
RecordComponent &RecordComponent::makeEmpty(uint8_t dimensions)
{
return makeEmpty(Dataset(determineDatatype<T>(), Extent(dimensions, 0)));
}
template <typename T>
std::shared_ptr<T> RecordComponent::loadChunk(Offset o, Extent e)
{
uint8_t dim = getDimensionality();
// default arguments
// offset = {0u}: expand to right dim {0u, 0u, ...}
Offset offset = o;
if (o.size() == 1u && o.at(0) == 0u && dim > 1u)
offset = Offset(dim, 0u);
// extent = {-1u}: take full size
Extent extent(dim, 1u);
if (e.size() == 1u && e.at(0) == -1u)
{
extent = getExtent();
for (uint8_t i = 0u; i < dim; ++i)
extent[i] -= offset[i];
}
else
extent = e;
uint64_t numPoints = 1u;
for (auto const &dimensionSize : extent)
numPoints *= dimensionSize;
#if (defined(_LIBCPP_VERSION) && _LIBCPP_VERSION < 11000) || \
(defined(__apple_build_version__) && __clang_major__ < 14)
auto newData =
std::shared_ptr<T>(new T[numPoints], [](T *p) { delete[] p; });
loadChunk(newData, offset, extent);
return newData;
#else
auto newData = std::shared_ptr<std::remove_extent_t<T>[]>(
new std::remove_extent_t<T>[numPoints]);
loadChunk(newData, offset, extent);
return std::static_pointer_cast<T>(std::move(newData));
#endif
}
namespace detail
{
template <typename To>
struct do_convert
{
template <typename From>
static std::optional<To> call(Attribute &attr)
{
if constexpr (std::is_convertible_v<From, To>)
{
return std::make_optional<To>(attr.get<From>());
}
else
{
return std::nullopt;
}
}
static constexpr char const *errorMsg = "is_conversible";
};
} // namespace detail
template <typename T>
void RecordComponent::loadChunk(std::shared_ptr<T> data, Offset o, Extent e)
{
Datatype dtype = determineDatatype(data);
/*
* For constant components, we implement type conversion, so there is
* a separate check further below.
* This is especially useful for the short-attribute representation in the
* JSON/TOML backends as they might implicitly turn a LONG into an INT in a
* constant component. The frontend needs to catch such edge cases.
* Ref. `if (constant())` branch.
*
* Attention: Do NOT use operator==(), doesnt work properly on Windows!
*/
if (!isSame(dtype, getDatatype()) && !constant())
{
std::string const data_type_str = datatypeToString(getDatatype());
std::string const requ_type_str =
datatypeToString(determineDatatype<T>());
std::string err_msg =
"Type conversion during chunk loading not yet implemented! ";
err_msg += "Data: " + data_type_str + "; Load as: " + requ_type_str;
throw std::runtime_error(err_msg);
}
uint8_t dim = getDimensionality();
// default arguments
// offset = {0u}: expand to right dim {0u, 0u, ...}
Offset offset = o;
if (o.size() == 1u && o.at(0) == 0u && dim > 1u)
offset = Offset(dim, 0u);
// extent = {-1u}: take full size
Extent extent(dim, 1u);
if (e.size() == 1u && e.at(0) == -1u)
{
extent = getExtent();
for (uint8_t i = 0u; i < dim; ++i)
extent[i] -= offset[i];
}
else
extent = e;
if (extent.size() != dim || offset.size() != dim)
{
std::ostringstream oss;
oss << "Dimensionality of chunk ("
<< "offset=" << offset.size() << "D, "
<< "extent=" << extent.size() << "D) "
<< "and record component (" << int(dim) << "D) "
<< "do not match.";
throw std::runtime_error(oss.str());
}
Extent dse = getExtent();
for (uint8_t i = 0; i < dim; ++i)
if (dse[i] < offset[i] + extent[i])
throw std::runtime_error(
"Chunk does not reside inside dataset (Dimension on index " +
std::to_string(i) + ". DS: " + std::to_string(dse[i]) +
" - Chunk: " + std::to_string(offset[i] + extent[i]) + ")");
if (!data)
throw std::runtime_error(
"Unallocated pointer passed during chunk loading.");
auto &rc = get();
if (constant())
{
uint64_t numPoints = 1u;
for (auto const &dimensionSize : extent)
numPoints *= dimensionSize;
std::optional<T> val =
switchNonVectorType<detail::do_convert</* To = */ T>>(
/* dt = */ getDatatype(), rc.m_constantValue);
if (val.has_value())
{
T *raw_ptr = data.get();
std::fill(raw_ptr, raw_ptr + numPoints, *val);
}
else
{
std::string const data_type_str = datatypeToString(getDatatype());
std::string const requ_type_str =
datatypeToString(determineDatatype<T>());
std::string err_msg =
"Type conversion during chunk loading not possible! ";
err_msg += "Data: " + data_type_str + "; Load as: " + requ_type_str;
throw error::WrongAPIUsage(err_msg);
}
}
else
{
Parameter<Operation::READ_DATASET> dRead;
dRead.offset = offset;
dRead.extent = extent;
dRead.dtype = getDatatype();
dRead.data = std::static_pointer_cast<void>(data);
rc.push_chunk(IOTask(this, dRead));
}
}
template <typename T>
void RecordComponent::loadChunk(
std::shared_ptr<T[]> ptr, Offset offset, Extent extent)
{
loadChunk(
std::static_pointer_cast<T>(std::move(ptr)),
std::move(offset),
std::move(extent));
}
template <typename T>
void RecordComponent::loadChunkRaw(T *ptr, Offset offset, Extent extent)
{
loadChunk(auxiliary::shareRaw(ptr), std::move(offset), std::move(extent));
}
template <typename T>
void RecordComponent::storeChunk(std::shared_ptr<T> data, Offset o, Extent e)
{
if (!data)
throw std::runtime_error(
"Unallocated pointer passed during chunk store.");
Datatype dtype = determineDatatype(data);
/* std::static_pointer_cast correctly reference-counts the pointer */
storeChunk(
auxiliary::WriteBuffer(std::static_pointer_cast<void const>(data)),
dtype,
std::move(o),
std::move(e));
}
template <typename T>
void RecordComponent::storeChunk(
UniquePtrWithLambda<T> data, Offset o, Extent e)
{
if (!data)
throw std::runtime_error(
"Unallocated pointer passed during chunk store.");
Datatype dtype = determineDatatype<>(data);
storeChunk(
auxiliary::WriteBuffer{std::move(data).template static_cast_<void>()},
dtype,
std::move(o),
std::move(e));
}
template <typename T>
void RecordComponent::storeChunk(std::shared_ptr<T[]> data, Offset o, Extent e)
{
storeChunk(
std::static_pointer_cast<T const>(std::move(data)),
std::move(o),
std::move(e));
}
template <typename T>
void RecordComponent::storeChunkRaw(T const *ptr, Offset offset, Extent extent)
{
storeChunk(auxiliary::shareRaw(ptr), std::move(offset), std::move(extent));
}
template <typename T>
DynamicMemoryView<T> RecordComponent::storeChunk(Offset offset, Extent extent)
{
return storeChunk<T>(std::move(offset), std::move(extent), [](size_t size) {
#if (defined(_LIBCPP_VERSION) && _LIBCPP_VERSION < 11000) || \
(defined(__apple_build_version__) && __clang_major__ < 14)
return UniquePtrWithLambda<T>{
new T[size], [](auto *ptr) { delete[] ptr; }};
#else
return std::unique_ptr<T[]>{new T[size]};