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"node_modules/serialize-error": { - "version": "7.0.1", - "resolved": "https://registry.npmjs.org/serialize-error/-/serialize-error-7.0.1.tgz", - "integrity": "sha512-8I8TjW5KMOKsZQTvoxjuSIa7foAwPWGOts+6o7sgjz41/qMD9VQHEDxi6PBvK2l0MXUmqZyNpUK+T2tQaaElvw==", - "license": "MIT", - "optional": true, - "dependencies": { - "type-fest": "^0.13.1" - }, - "engines": { - "node": ">=10" - }, - "funding": { - "url": "https://github.com/sponsors/sindresorhus" - } - }, "node_modules/serve-static": { "version": "2.2.1", "resolved": "https://registry.npmjs.org/serve-static/-/serve-static-2.2.1.tgz", @@ -6632,51 +5751,6 @@ "license": "ISC", "optional": true }, - "node_modules/sharp": { - "version": "0.34.5", - "resolved": "https://registry.npmjs.org/sharp/-/sharp-0.34.5.tgz", - "integrity": "sha512-Ou9I5Ft9WNcCbXrU9cMgPBcCK8LiwLqcbywW3t4oDV37n1pzpuNLsYiAV8eODnjbtQlSDwZ2cUEeQz4E54Hltg==", - "hasInstallScript": true, - "license": "Apache-2.0", - "optional": true, - "dependencies": { - "@img/colour": "^1.0.0", - "detect-libc": "^2.1.2", - "semver": "^7.7.3" - }, - "engines": { - "node": "^18.17.0 || ^20.3.0 || >=21.0.0" - }, - "funding": { - "url": "https://opencollective.com/libvips" - }, - "optionalDependencies": { - "@img/sharp-darwin-arm64": "0.34.5", - "@img/sharp-darwin-x64": "0.34.5", - "@img/sharp-libvips-darwin-arm64": "1.2.4", - "@img/sharp-libvips-darwin-x64": "1.2.4", - "@img/sharp-libvips-linux-arm": "1.2.4", - "@img/sharp-libvips-linux-arm64": "1.2.4", - "@img/sharp-libvips-linux-ppc64": "1.2.4", - "@img/sharp-libvips-linux-riscv64": "1.2.4", - "@img/sharp-libvips-linux-s390x": "1.2.4", - "@img/sharp-libvips-linux-x64": "1.2.4", - "@img/sharp-libvips-linuxmusl-arm64": "1.2.4", - "@img/sharp-libvips-linuxmusl-x64": "1.2.4", - "@img/sharp-linux-arm": "0.34.5", - "@img/sharp-linux-arm64": "0.34.5", - "@img/sharp-linux-ppc64": "0.34.5", - "@img/sharp-linux-riscv64": "0.34.5", - "@img/sharp-linux-s390x": "0.34.5", - "@img/sharp-linux-x64": "0.34.5", - "@img/sharp-linuxmusl-arm64": "0.34.5", - "@img/sharp-linuxmusl-x64": "0.34.5", - "@img/sharp-wasm32": "0.34.5", - "@img/sharp-win32-arm64": "0.34.5", - "@img/sharp-win32-ia32": "0.34.5", - "@img/sharp-win32-x64": "0.34.5" - } - }, "node_modules/shebang-command": { "version": "2.0.0", "resolved": "https://registry.npmjs.org/shebang-command/-/shebang-command-2.0.0.tgz", @@ -6907,13 +5981,6 @@ "node": ">= 10.x" } }, - "node_modules/sprintf-js": { - "version": "1.1.3", - "resolved": "https://registry.npmjs.org/sprintf-js/-/sprintf-js-1.1.3.tgz", - "integrity": "sha512-Oo+0REFV59/rz3gfJNKQiBlwfHaSESl1pcGyABQsnnIfWOFt6JNj5gCog2U6MLZ//IGYD+nA8nI+mTShREReaA==", - "license": "BSD-3-Clause", - "optional": true - }, "node_modules/stackback": { "version": "0.0.2", "resolved": "https://registry.npmjs.org/stackback/-/stackback-0.0.2.tgz", @@ -7046,23 +6113,6 @@ "url": "https://github.com/sponsors/ljharb" } }, - "node_modules/tar": { - "version": "7.5.9", - "resolved": "https://registry.npmjs.org/tar/-/tar-7.5.9.tgz", - "integrity": "sha512-BTLcK0xsDh2+PUe9F6c2TlRp4zOOBMTkoQHQIWSIzI0R7KG46uEwq4OPk2W7bZcprBMsuaeFsqwYr7pjh6CuHg==", - "license": "BlueOak-1.0.0", - "optional": true, - "dependencies": { - "@isaacs/fs-minipass": "^4.0.0", - "chownr": "^3.0.0", - "minipass": "^7.1.2", - "minizlib": "^3.1.0", - "yallist": "^5.0.0" - }, - "engines": { - "node": ">=18" - } - }, "node_modules/tar-fs": { "version": "2.1.4", "resolved": "https://registry.npmjs.org/tar-fs/-/tar-fs-2.1.4.tgz", @@ -7440,13 +6490,6 @@ "node": ">=8" } }, - "node_modules/tslib": { - "version": "2.8.1", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.8.1.tgz", - "integrity": "sha512-oJFu94HQb+KVduSUQL7wnpmqnfmLsOA/nAh6b6EH0wCEoK0/mPeXU6c3wKDV83MkOuHPRHtSXKKU99IBazS/2w==", - "license": "0BSD", - "optional": true - }, "node_modules/tunnel-agent": { "version": "0.6.0", "resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz", @@ -7459,19 +6502,6 @@ "node": "*" } }, - "node_modules/type-fest": { - "version": "0.13.1", - "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-0.13.1.tgz", - "integrity": "sha512-34R7HTnG0XIJcBSn5XhDd7nNFPRcXYRZrBB2O2jdKqYODldSzBAqzsWoZYYvduky73toYS/ESqxPvkDf/F0XMg==", - "license": "(MIT OR CC0-1.0)", - "optional": true, - "engines": { - "node": ">=10" - }, - "funding": { - "url": "https://github.com/sponsors/sindresorhus" - } - }, "node_modules/type-is": { "version": "2.0.1", "resolved": "https://registry.npmjs.org/type-is/-/type-is-2.0.1.tgz", @@ -7823,16 +6853,6 @@ "node": ">=10" } }, - "node_modules/yallist": { - "version": "5.0.0", - "resolved": "https://registry.npmjs.org/yallist/-/yallist-5.0.0.tgz", - "integrity": "sha512-YgvUTfwqyc7UXVMrB+SImsVYSmTS8X/tSrtdNZMImM+n7+QTriRXyXim0mBrTXNeqzVF0KWGgHPeiyViFFrNDw==", - "license": "BlueOak-1.0.0", - "optional": true, - "engines": { - "node": ">=18" - } - }, "node_modules/yaml": { "version": "2.8.2", "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.8.2.tgz", diff --git a/src/builder.js b/src/builder.js index f48903c1..c4d1322c 100644 --- a/src/builder.js +++ b/src/builder.js @@ -441,7 +441,43 @@ export async function buildGraph(rootDir, opts = {}) { : deletions, ); } else { - info(`Incremental: ${parseChanges.length} changed, ${removed.length} removed`); + // ── Reverse-dependency cascade (issue #116) ───────────────────── + // Find files with edges pointing TO changed/removed files. + // Their nodes stay intact (preserving IDs), but outgoing edges are + // deleted so they can be rebuilt during the edge-building pass. + const changedRelPaths = new Set(); + for (const item of parseChanges) { + changedRelPaths.add(item.relPath || normalizePath(path.relative(rootDir, item.file))); + } + for (const relPath of removed) { + changedRelPaths.add(relPath); + } + + const reverseDeps = new Set(); + if (changedRelPaths.size > 0) { + const findReverseDeps = db.prepare(` + SELECT DISTINCT n_src.file FROM edges e + JOIN nodes n_src ON e.source_id = n_src.id + JOIN nodes n_tgt ON e.target_id = n_tgt.id + WHERE n_tgt.file = ? AND n_src.file != n_tgt.file + `); + for (const relPath of changedRelPaths) { + for (const row of findReverseDeps.all(relPath)) { + if (!changedRelPaths.has(row.file) && !reverseDeps.has(row.file)) { + // Verify the file still exists on disk + const absPath = path.join(rootDir, row.file); + if (fs.existsSync(absPath)) { + reverseDeps.add(row.file); + } + } + } + } + } + + info( + `Incremental: ${parseChanges.length} changed, ${removed.length} removed${reverseDeps.size > 0 ? `, ${reverseDeps.size} reverse-deps` : ''}`, + ); + // Remove embeddings/metrics/edges/nodes for changed and removed files // Embeddings must be deleted BEFORE nodes (we need node IDs to find them) const deleteEmbeddingsForFile = hasEmbeddings @@ -452,6 +488,9 @@ export async function buildGraph(rootDir, opts = {}) { DELETE FROM edges WHERE source_id IN (SELECT id FROM nodes WHERE file = @f) OR target_id IN (SELECT id FROM nodes WHERE file = @f) `); + const deleteOutgoingEdgesForFile = db.prepare( + 'DELETE FROM edges WHERE source_id IN (SELECT id FROM nodes WHERE file = ?)', + ); const deleteMetricsForFile = db.prepare( 'DELETE FROM node_metrics WHERE node_id IN (SELECT id FROM nodes WHERE file = ?)', ); @@ -468,6 +507,16 @@ export async function buildGraph(rootDir, opts = {}) { deleteMetricsForFile.run(relPath); deleteNodesForFile.run(relPath); } + + // Process reverse deps: delete only outgoing edges (nodes/IDs preserved) + // then add them to the parse list so they participate in edge building + for (const relPath of reverseDeps) { + deleteOutgoingEdgesForFile.run(relPath); + } + for (const relPath of reverseDeps) { + const absPath = path.join(rootDir, relPath); + parseChanges.push({ file: absPath, relPath, _reverseDepOnly: true }); + } } const insertNode = db.prepare( @@ -529,9 +578,12 @@ export async function buildGraph(rootDir, opts = {}) { } // Update file hash with real mtime+size for incremental builds + // Skip for reverse-dep files — they didn't actually change if (upsertHash) { const precomputed = precomputedData.get(relPath); - if (precomputed?.hash) { + if (precomputed?._reverseDepOnly) { + // no-op: file unchanged, hash already correct + } else if (precomputed?.hash) { const stat = precomputed.stat || fileStat(path.join(rootDir, relPath)); const mtime = stat ? Math.floor(stat.mtimeMs) : 0; const size = stat ? stat.size : 0; diff --git a/tests/integration/build.test.js b/tests/integration/build.test.js index 6d1b8657..cc1c9971 100644 --- a/tests/integration/build.test.js +++ b/tests/integration/build.test.js @@ -261,6 +261,75 @@ describe('three-tier incremental builds', () => { expect(names).toContain('helper'); }); + test('incremental rebuild preserves edges from unchanged files (issue #116)', async () => { + // Reset all files to original state and do a clean build + for (const [name, content] of Object.entries(FIXTURE_FILES)) { + fs.writeFileSync(path.join(incrDir, name), content); + } + await buildGraph(incrDir, { skipRegistry: true, incremental: false }); + + // Record baseline edges + const db1 = new Database(incrDbPath, { readonly: true }); + const baselineImports = db1 + .prepare(` + SELECT s.file as src, t.file as tgt FROM edges e + JOIN nodes s ON e.source_id = s.id + JOIN nodes t ON e.target_id = t.id + WHERE e.kind = 'imports' AND s.kind = 'file' AND t.kind = 'file' + `) + .all() + .map((e) => `${e.src}->${e.tgt}`) + .sort(); + const baselineCalls = db1 + .prepare(` + SELECT s.name as caller, t.name as callee FROM edges e + JOIN nodes s ON e.source_id = s.id + JOIN nodes t ON e.target_id = t.id + WHERE e.kind = 'calls' + `) + .all() + .map((e) => `${e.caller}->${e.callee}`) + .sort(); + db1.close(); + + // Touch math.js (append a comment — content changes but exports don't) + const mathPath = path.join(incrDir, 'math.js'); + fs.writeFileSync(mathPath, `${FIXTURE_FILES['math.js']}// touched\n`); + + // Incremental rebuild + await buildGraph(incrDir, { skipRegistry: true }); + + // Assert import edges match baseline + const db2 = new Database(incrDbPath, { readonly: true }); + const afterImports = db2 + .prepare(` + SELECT s.file as src, t.file as tgt FROM edges e + JOIN nodes s ON e.source_id = s.id + JOIN nodes t ON e.target_id = t.id + WHERE e.kind = 'imports' AND s.kind = 'file' AND t.kind = 'file' + `) + .all() + .map((e) => `${e.src}->${e.tgt}`) + .sort(); + const afterCalls = db2 + .prepare(` + SELECT s.name as caller, t.name as callee FROM edges e + JOIN nodes s ON e.source_id = s.id + JOIN nodes t ON e.target_id = t.id + WHERE e.kind = 'calls' + `) + .all() + .map((e) => `${e.caller}->${e.callee}`) + .sort(); + db2.close(); + + // Key assertions: edges FROM unchanged files TO math.js must survive + expect(afterImports).toContain('utils.js->math.js'); + expect(afterImports).toContain('index.js->math.js'); + expect(afterImports).toEqual(baselineImports); + expect(afterCalls).toEqual(baselineCalls); + }); + test('rebuild with corrupt journal falls back to Tier 1', async () => { // Reset utils.js fs.writeFileSync(path.join(incrDir, 'utils.js'), FIXTURE_FILES['utils.js']);