diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 2b755614..f76fbdbd 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -170,7 +170,7 @@ jobs:
           VERSION: ${{ needs.compute-version.outputs.version }}
         run: |
           npm version "$VERSION" --no-git-tag-version --allow-same-version
-          node scripts/sync-native-versions.js
+          node scripts/sync-native-versions.js --strip
           echo "Packaging version $VERSION"
 
       - name: Disable prepublishOnly
diff --git a/README.md b/README.md
index 52e679eb..74d5b78e 100644
--- a/README.md
+++ b/README.md
@@ -135,6 +135,8 @@ git clone https://github.com/optave/codegraph.git
 cd codegraph && npm install && npm link
 ```
 
+> **Dev builds:** Pre-release tarballs are attached to [GitHub Releases](https://github.com/optave/codegraph/releases). Install with `npm install -g <path-to-tarball>`. Note that `npm install -g <tarball-url>` does not work because npm cannot resolve optional platform-specific dependencies from a URL — download the `.tgz` first, then install from the local file.
+
 ### For AI agents
 
 Add codegraph to your agent's instructions (e.g. `CLAUDE.md`):
diff --git a/crates/codegraph-core/Cargo.toml b/crates/codegraph-core/Cargo.toml
index 65460fa9..36aab6b2 100644
--- a/crates/codegraph-core/Cargo.toml
+++ b/crates/codegraph-core/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "codegraph-core"
-version = "0.1.0"
+version = "2.6.0"
 edition = "2021"
 license = "Apache-2.0"
 
diff --git a/generated/DOGFOOD_REPORT_v2.5.0.md b/generated/dogfood/DOGFOOD_REPORT_v2.5.0.md
similarity index 100%
rename from generated/DOGFOOD_REPORT_v2.5.0.md
rename to generated/dogfood/DOGFOOD_REPORT_v2.5.0.md
diff --git a/package-lock.json b/package-lock.json
index 82ddd6d2..4991058e 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -9,7 +9,6 @@
       "version": "2.6.0",
       "license": "Apache-2.0",
       "dependencies": {
-        "@modelcontextprotocol/sdk": "1.27.1",
         "better-sqlite3": "^12.6.2",
         "commander": "^14.0.3",
         "graphology": "^0.25.4",
@@ -23,6 +22,7 @@
         "@biomejs/biome": "^2.4.4",
         "@commitlint/cli": "^20.4",
         "@commitlint/config-conventional": "^20.0",
+        "@huggingface/transformers": "^3.8.1",
         "@tree-sitter-grammars/tree-sitter-hcl": "^1.2.0",
         "@vitest/coverage-v8": "^4.0.18",
         "commit-and-tag-version": "^12.5",
@@ -572,6 +572,17 @@
         "node": ">=v18"
       }
     },
+    "node_modules/@emnapi/runtime": {
+      "version": "1.8.1",
+      "resolved": "https://registry.npmjs.org/@emnapi/runtime/-/runtime-1.8.1.tgz",
+      "integrity": "sha512-mehfKSMWjjNol8659Z8KxEMrdSJDDot5SXMq00dM8BN4o+CLNXQ0xH2V7EchNHV4RmbZLmmPdEaXZc5H2FXmDg==",
+      "dev": true,
+      "license": "MIT",
+      "optional": true,
+      "dependencies": {
+        "tslib": "^2.4.0"
+      }
+    },
     "node_modules/@esbuild/aix-ppc64": {
       "version": "0.27.3",
       "resolved": "https://registry.npmjs.org/@esbuild/aix-ppc64/-/aix-ppc64-0.27.3.tgz",
@@ -1027,6 +1038,29 @@
         "hono": "^4"
       }
     },
+    "node_modules/@huggingface/jinja": {
+      "version": "0.5.5",
+      "resolved": "https://registry.npmjs.org/@huggingface/jinja/-/jinja-0.5.5.tgz",
+      "integrity": "sha512-xRlzazC+QZwr6z4ixEqYHo9fgwhTZ3xNSdljlKfUFGZSdlvt166DljRELFUfFytlYOYvo3vTisA/AFOuOAzFQQ==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=18"
+      }
+    },
+    "node_modules/@huggingface/transformers": {
+      "version": "3.8.1",
+      "resolved": "https://registry.npmjs.org/@huggingface/transformers/-/transformers-3.8.1.tgz",
+      "integrity": "sha512-tsTk4zVjImqdqjS8/AOZg2yNLd1z9S5v+7oUPpXaasDRwEDhB+xnglK1k5cad26lL5/ZIaeREgWWy0bs9y9pPA==",
+      "dev": true,
+      "license": "Apache-2.0",
+      "dependencies": {
+        "@huggingface/jinja": "^0.5.3",
+        "onnxruntime-node": "1.21.0",
+        "onnxruntime-web": "1.22.0-dev.20250409-89f8206ba4",
+        "sharp": "^0.34.1"
+      }
+    },
     "node_modules/@hutson/parse-repository-url": {
       "version": "3.0.2",
       "resolved": "https://registry.npmjs.org/@hutson/parse-repository-url/-/parse-repository-url-3.0.2.tgz",
@@ -1037,6 +1071,509 @@
         "node": ">=6.9.0"
       }
     },
+    "node_modules/@img/colour": {
+      "version": "1.1.0",
+      "resolved": "https://registry.npmjs.org/@img/colour/-/colour-1.1.0.tgz",
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+      "cpu": [
+        "arm64"
+      ],
+      "dev": true,
+      "license": "Apache-2.0",
+      "optional": true,
+      "os": [
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+      ],
+      "engines": {
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+      },
+      "funding": {
+        "url": "https://opencollective.com/libvips"
+      },
+      "optionalDependencies": {
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+      }
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@@ -4871,6 +5604,29 @@
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@@ -5018,6 +5774,16 @@
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@@ -5057,6 +5823,53 @@
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@@ -5216,6 +6029,13 @@
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@@ -5279,6 +6099,31 @@
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+      "dev": true,
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+      "license": "BSD-3-Clause",
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       "resolved": "https://registry.npmjs.org/proxy-addr/-/proxy-addr-2.0.7.tgz",
@@ -5581,6 +6426,24 @@
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+        "detect-node": "^2.0.4",
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+        "semver-compare": "^1.0.0",
+        "sprintf-js": "^1.1.2"
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@@ -5682,6 +6545,13 @@
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+      "dev": true,
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       "resolved": "https://registry.npmjs.org/send/-/send-1.2.1.tgz",
@@ -5709,6 +6579,22 @@
         "url": "https://opencollective.com/express"
       }
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+      "resolved": "https://registry.npmjs.org/serialize-error/-/serialize-error-7.0.1.tgz",
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+      "license": "MIT",
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       "resolved": "https://registry.npmjs.org/serve-static/-/serve-static-2.2.1.tgz",
@@ -5736,6 +6622,51 @@
       "license": "ISC",
       "optional": true
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+      "resolved": "https://registry.npmjs.org/sharp/-/sharp-0.34.5.tgz",
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+      "dev": true,
+      "hasInstallScript": true,
+      "license": "Apache-2.0",
+      "dependencies": {
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+        "detect-libc": "^2.1.2",
+        "semver": "^7.7.3"
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+      "funding": {
+        "url": "https://opencollective.com/libvips"
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+        "@img/sharp-libvips-darwin-x64": "1.2.4",
+        "@img/sharp-libvips-linux-arm": "1.2.4",
+        "@img/sharp-libvips-linux-arm64": "1.2.4",
+        "@img/sharp-libvips-linux-ppc64": "1.2.4",
+        "@img/sharp-libvips-linux-riscv64": "1.2.4",
+        "@img/sharp-libvips-linux-s390x": "1.2.4",
+        "@img/sharp-libvips-linux-x64": "1.2.4",
+        "@img/sharp-libvips-linuxmusl-arm64": "1.2.4",
+        "@img/sharp-libvips-linuxmusl-x64": "1.2.4",
+        "@img/sharp-linux-arm": "0.34.5",
+        "@img/sharp-linux-arm64": "0.34.5",
+        "@img/sharp-linux-ppc64": "0.34.5",
+        "@img/sharp-linux-riscv64": "0.34.5",
+        "@img/sharp-linux-s390x": "0.34.5",
+        "@img/sharp-linux-x64": "0.34.5",
+        "@img/sharp-linuxmusl-arm64": "0.34.5",
+        "@img/sharp-linuxmusl-x64": "0.34.5",
+        "@img/sharp-wasm32": "0.34.5",
+        "@img/sharp-win32-arm64": "0.34.5",
+        "@img/sharp-win32-ia32": "0.34.5",
+        "@img/sharp-win32-x64": "0.34.5"
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@@ -5966,6 +6897,13 @@
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+      "resolved": "https://registry.npmjs.org/sprintf-js/-/sprintf-js-1.1.3.tgz",
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+      "dev": true,
+      "license": "BSD-3-Clause"
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@@ -6098,6 +7036,23 @@
         "url": "https://github.com/sponsors/ljharb"
       }
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+      "resolved": "https://registry.npmjs.org/tar/-/tar-7.5.9.tgz",
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+      "dev": true,
+      "license": "BlueOak-1.0.0",
+      "dependencies": {
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+        "chownr": "^3.0.0",
+        "minipass": "^7.1.2",
+        "minizlib": "^3.1.0",
+        "yallist": "^5.0.0"
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       "resolved": "https://registry.npmjs.org/tar-fs/-/tar-fs-2.1.4.tgz",
@@ -6462,6 +7417,14 @@
         "node": ">=8"
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+      "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.8.1.tgz",
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+      "dev": true,
+      "license": "0BSD",
+      "optional": true
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       "resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz",
@@ -6474,6 +7437,19 @@
         "node": "*"
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+    "node_modules/type-fest": {
+      "version": "0.13.1",
+      "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-0.13.1.tgz",
+      "integrity": "sha512-34R7HTnG0XIJcBSn5XhDd7nNFPRcXYRZrBB2O2jdKqYODldSzBAqzsWoZYYvduky73toYS/ESqxPvkDf/F0XMg==",
+      "dev": true,
+      "license": "(MIT OR CC0-1.0)",
+      "engines": {
+        "node": ">=10"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
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       "resolved": "https://registry.npmjs.org/type-is/-/type-is-2.0.1.tgz",
@@ -6530,8 +7506,7 @@
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       "dev": true,
-      "license": "MIT",
-      "peer": true
+      "license": "MIT"
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     "node_modules/unpipe": {
       "version": "1.0.0",
@@ -6813,6 +7788,16 @@
         "node": ">=10"
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+    "node_modules/yallist": {
+      "version": "5.0.0",
+      "resolved": "https://registry.npmjs.org/yallist/-/yallist-5.0.0.tgz",
+      "integrity": "sha512-YgvUTfwqyc7UXVMrB+SImsVYSmTS8X/tSrtdNZMImM+n7+QTriRXyXim0mBrTXNeqzVF0KWGgHPeiyViFFrNDw==",
+      "dev": true,
+      "license": "BlueOak-1.0.0",
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diff --git a/package.json b/package.json
index 1cbbcbd3..02987842 100644
--- a/package.json
+++ b/package.json
@@ -78,6 +78,7 @@
   },
   "devDependencies": {
     "@biomejs/biome": "^2.4.4",
+    "@huggingface/transformers": "^3.8.1",
     "@commitlint/cli": "^20.4",
     "@commitlint/config-conventional": "^20.0",
     "@tree-sitter-grammars/tree-sitter-hcl": "^1.2.0",
diff --git a/scripts/sync-native-versions.js b/scripts/sync-native-versions.js
index 9f6943a4..d4ae9100 100644
--- a/scripts/sync-native-versions.js
+++ b/scripts/sync-native-versions.js
@@ -2,16 +2,38 @@
 /**
  * Syncs @optave/codegraph-* optionalDependencies versions to match the root version.
  * Runs automatically via the npm "version" lifecycle hook.
+ *
+ * Flags:
+ *   --strip   Remove platform @optave/codegraph-* entries from optionalDependencies
+ *             (used by publish-dev to avoid npm resolution failures for dev versions)
  */
 import { readFileSync, writeFileSync } from 'node:fs';
 
+const strip = process.argv.includes('--strip');
+
 const pkg = JSON.parse(readFileSync('package.json', 'utf8'));
 const v = pkg.version;
 
 for (const key of Object.keys(pkg.optionalDependencies)) {
   if (key.startsWith('@optave/codegraph-')) {
-    pkg.optionalDependencies[key] = v;
+    if (strip) {
+      delete pkg.optionalDependencies[key];
+    } else {
+      pkg.optionalDependencies[key] = v;
+    }
   }
 }
 
 writeFileSync('package.json', JSON.stringify(pkg, null, 2) + '\n');
+
+// Also sync Cargo.toml version (used by the native engine's engine_version())
+if (!strip) {
+  const cargoPath = 'crates/codegraph-core/Cargo.toml';
+  try {
+    let cargo = readFileSync(cargoPath, 'utf8');
+    cargo = cargo.replace(/^version\s*=\s*"[^"]*"/m, `version = "${v}"`);
+    writeFileSync(cargoPath, cargo);
+  } catch {
+    /* skip if Cargo.toml doesn't exist */
+  }
+}
diff --git a/src/builder.js b/src/builder.js
index 0040e8f2..91ab5db6 100644
--- a/src/builder.js
+++ b/src/builder.js
@@ -460,7 +460,7 @@ export async function buildGraph(rootDir, opts = {}) {
         SELECT DISTINCT n_src.file FROM edges e
         JOIN nodes n_src ON e.source_id = n_src.id
         JOIN nodes n_tgt ON e.target_id = n_tgt.id
-        WHERE n_tgt.file = ? AND n_src.file != n_tgt.file
+        WHERE n_tgt.file = ? AND n_src.file != n_tgt.file AND n_src.kind != 'directory'
       `);
       for (const relPath of changedRelPaths) {
         for (const row of findReverseDeps.all(relPath)) {
@@ -687,6 +687,46 @@ export async function buildGraph(rootDir, opts = {}) {
     }
   }
 
+  // For incremental builds, load unchanged barrel files into reexportMap
+  // so barrel-resolved import/call edges aren't dropped for reverse-dep files.
+  // These files are loaded only for resolution — they must NOT be iterated
+  // in the edge-building loop (their existing edges are still in the DB).
+  const barrelOnlyFiles = new Set();
+  if (!isFullBuild) {
+    const barrelCandidates = db
+      .prepare(
+        `SELECT DISTINCT n1.file FROM edges e
+         JOIN nodes n1 ON e.source_id = n1.id
+         WHERE e.kind = 'reexports' AND n1.kind = 'file'`,
+      )
+      .all();
+    for (const { file: relPath } of barrelCandidates) {
+      if (fileSymbols.has(relPath)) continue;
+      const absPath = path.join(rootDir, relPath);
+      try {
+        const symbols = await parseFilesAuto([absPath], rootDir, engineOpts);
+        const fileSym = symbols.get(relPath);
+        if (fileSym) {
+          fileSymbols.set(relPath, fileSym);
+          barrelOnlyFiles.add(relPath);
+          const reexports = fileSym.imports.filter((imp) => imp.reexport);
+          if (reexports.length > 0) {
+            reexportMap.set(
+              relPath,
+              reexports.map((imp) => ({
+                source: getResolved(absPath, imp.source),
+                names: imp.names,
+                wildcardReexport: imp.wildcardReexport || false,
+              })),
+            );
+          }
+        }
+      } catch {
+        /* skip if unreadable */
+      }
+    }
+  }
+
   function isBarrelFile(relPath) {
     const symbols = fileSymbols.get(relPath);
     if (!symbols) return false;
@@ -752,6 +792,8 @@ export async function buildGraph(rootDir, opts = {}) {
   let edgeCount = 0;
   const buildEdges = db.transaction(() => {
     for (const [relPath, symbols] of fileSymbols) {
+      // Skip barrel-only files — loaded for resolution, edges already in DB
+      if (barrelOnlyFiles.has(relPath)) continue;
       const fileNodeRow = getNodeId.get(relPath, 'file', relPath, 0);
       if (!fileNodeRow) continue;
       const fileNodeId = fileNodeRow.id;
@@ -1046,6 +1088,26 @@ export async function buildGraph(rootDir, opts = {}) {
   info(`Graph built: ${nodeCount} nodes, ${edgeCount} edges`);
   info(`Stored in ${dbPath}`);
 
+  // Verify incremental build didn't diverge significantly from previous counts
+  if (!isFullBuild) {
+    const prevNodes = getBuildMeta(db, 'node_count');
+    const prevEdges = getBuildMeta(db, 'edge_count');
+    if (prevNodes && prevEdges) {
+      const prevN = Number(prevNodes);
+      const prevE = Number(prevEdges);
+      if (prevN > 0) {
+        const nodeDrift = Math.abs(nodeCount - prevN) / prevN;
+        const edgeDrift = prevE > 0 ? Math.abs(edgeCount - prevE) / prevE : 0;
+        const driftThreshold = config.build?.driftThreshold ?? 0.2;
+        if (nodeDrift > driftThreshold || edgeDrift > driftThreshold) {
+          warn(
+            `Incremental build diverged significantly from previous counts (nodes: ${prevN}→${nodeCount} [${(nodeDrift * 100).toFixed(1)}%], edges: ${prevE}→${edgeCount} [${(edgeDrift * 100).toFixed(1)}%], threshold: ${(driftThreshold * 100).toFixed(0)}%). Consider rebuilding with --no-incremental.`,
+          );
+        }
+      }
+    }
+  }
+
   // Warn about orphaned embeddings that no longer match any node
   if (hasEmbeddings) {
     try {
@@ -1069,6 +1131,8 @@ export async function buildGraph(rootDir, opts = {}) {
       engine_version: engineVersion || '',
       codegraph_version: CODEGRAPH_VERSION,
       built_at: new Date().toISOString(),
+      node_count: nodeCount,
+      edge_count: edgeCount,
     });
   } catch (err) {
     warn(`Failed to write build metadata: ${err.message}`);
diff --git a/src/complexity.js b/src/complexity.js
index 00e38b4d..f97cb616 100644
--- a/src/complexity.js
+++ b/src/complexity.js
@@ -1891,8 +1891,15 @@ export function complexityData(customDbPath, opts = {}) {
       )
       .all(...params);
   } catch {
+    // Check if graph has nodes even though complexity table is missing/empty
+    let hasGraph = false;
+    try {
+      hasGraph = db.prepare('SELECT COUNT(*) as c FROM nodes').get().c > 0;
+    } catch {
+      /* ignore */
+    }
     db.close();
-    return { functions: [], summary: null, thresholds };
+    return { functions: [], summary: null, thresholds, hasGraph };
   }
 
   // Post-filter test files if needed (belt-and-suspenders for isTestFile)
@@ -1978,8 +1985,18 @@ export function complexityData(customDbPath, opts = {}) {
     /* ignore */
   }
 
+  // When summary is null (no complexity rows), check if graph has nodes
+  let hasGraph = false;
+  if (summary === null) {
+    try {
+      hasGraph = db.prepare('SELECT COUNT(*) as c FROM nodes').get().c > 0;
+    } catch {
+      /* ignore */
+    }
+  }
+
   db.close();
-  const base = { functions, summary, thresholds };
+  const base = { functions, summary, thresholds, hasGraph };
   return paginateResult(base, 'functions', { limit: opts.limit, offset: opts.offset });
 }
 
@@ -2080,9 +2097,15 @@ export function complexity(customDbPath, opts = {}) {
 
   if (data.functions.length === 0) {
     if (data.summary === null) {
-      console.log(
-        '\nNo complexity data found. Run "codegraph build" first to analyze your codebase.\n',
-      );
+      if (data.hasGraph) {
+        console.log(
+          '\nNo complexity data found, but a graph exists. Run "codegraph build --no-incremental" to populate complexity metrics.\n',
+        );
+      } else {
+        console.log(
+          '\nNo complexity data found. Run "codegraph build" first to analyze your codebase.\n',
+        );
+      }
     } else {
       console.log('\nNo functions match the given filters.\n');
     }
diff --git a/src/config.js b/src/config.js
index 9a3505df..1ab75e47 100644
--- a/src/config.js
+++ b/src/config.js
@@ -14,6 +14,7 @@ export const DEFAULTS = {
   build: {
     incremental: true,
     dbPath: '.codegraph/graph.db',
+    driftThreshold: 0.2,
   },
   query: {
     defaultDepth: 3,
diff --git a/tests/fixtures/barrel-project/app.js b/tests/fixtures/barrel-project/app.js
new file mode 100644
index 00000000..b086a27f
--- /dev/null
+++ b/tests/fixtures/barrel-project/app.js
@@ -0,0 +1,5 @@
+import { add, multiply } from './src/index.js';
+
+export function compute(x, y) {
+  return add(x, multiply(x, y));
+}
diff --git a/tests/fixtures/barrel-project/src/index.js b/tests/fixtures/barrel-project/src/index.js
new file mode 100644
index 00000000..f747f3d4
--- /dev/null
+++ b/tests/fixtures/barrel-project/src/index.js
@@ -0,0 +1 @@
+export { add, multiply } from './math.js';
diff --git a/tests/fixtures/barrel-project/src/math.js b/tests/fixtures/barrel-project/src/math.js
new file mode 100644
index 00000000..e059eb58
--- /dev/null
+++ b/tests/fixtures/barrel-project/src/math.js
@@ -0,0 +1,7 @@
+export function add(a, b) {
+  return a + b;
+}
+
+export function multiply(a, b) {
+  return a * b;
+}
diff --git a/tests/integration/incremental-parity.test.js b/tests/integration/incremental-parity.test.js
new file mode 100644
index 00000000..a109471f
--- /dev/null
+++ b/tests/integration/incremental-parity.test.js
@@ -0,0 +1,106 @@
+/**
+ * Incremental build parity test.
+ *
+ * Verifies that an incremental rebuild after touching a single file
+ * produces the same nodes and edges as a full build.
+ * Uses a barrel-file fixture to exercise re-export resolution.
+ */
+
+import fs from 'node:fs';
+import os from 'node:os';
+import path from 'node:path';
+import Database from 'better-sqlite3';
+import { afterAll, beforeAll, describe, expect, it } from 'vitest';
+import { buildGraph } from '../../src/builder.js';
+
+const FIXTURE_DIR = path.join(import.meta.dirname, '..', 'fixtures', 'barrel-project');
+
+function copyDirSync(src, dest) {
+  fs.mkdirSync(dest, { recursive: true });
+  for (const entry of fs.readdirSync(src, { withFileTypes: true })) {
+    const s = path.join(src, entry.name);
+    const d = path.join(dest, entry.name);
+    if (entry.isDirectory()) copyDirSync(s, d);
+    else fs.copyFileSync(s, d);
+  }
+}
+
+function readGraph(dbPath) {
+  const db = new Database(dbPath, { readonly: true });
+  const nodes = db
+    .prepare('SELECT name, kind, file, line FROM nodes ORDER BY name, kind, file, line')
+    .all();
+  const edges = db
+    .prepare(
+      `SELECT n1.name AS source_name, n2.name AS target_name, e.kind
+       FROM edges e
+       JOIN nodes n1 ON e.source_id = n1.id
+       JOIN nodes n2 ON e.target_id = n2.id
+       ORDER BY n1.name, n2.name, e.kind`,
+    )
+    .all();
+  db.close();
+  return { nodes, edges };
+}
+
+describe('Incremental build parity: full vs incremental', () => {
+  let fullDir;
+  let incrDir;
+  let tmpBase;
+
+  beforeAll(async () => {
+    tmpBase = fs.mkdtempSync(path.join(os.tmpdir(), 'codegraph-incr-parity-'));
+    fullDir = path.join(tmpBase, 'full');
+    incrDir = path.join(tmpBase, 'incr');
+    copyDirSync(FIXTURE_DIR, fullDir);
+    copyDirSync(FIXTURE_DIR, incrDir);
+
+    // Step 1: Full build both copies
+    await buildGraph(fullDir, { incremental: false, skipRegistry: true });
+    await buildGraph(incrDir, { incremental: false, skipRegistry: true });
+
+    // Step 2: Touch app.js in the incr copy (append a comment)
+    const appPath = path.join(incrDir, 'app.js');
+    fs.appendFileSync(appPath, '\n// touched\n');
+
+    // Step 3: Incremental rebuild
+    await buildGraph(incrDir, { incremental: true, skipRegistry: true });
+
+    // Step 4: Full rebuild the full copy so both have identical source
+    const fullAppPath = path.join(fullDir, 'app.js');
+    fs.appendFileSync(fullAppPath, '\n// touched\n');
+    await buildGraph(fullDir, { incremental: false, skipRegistry: true });
+  }, 60_000);
+
+  afterAll(() => {
+    try {
+      if (tmpBase) fs.rmSync(tmpBase, { recursive: true, force: true });
+    } catch {
+      /* ignore */
+    }
+  });
+
+  it('produces the same node count', () => {
+    const fullGraph = readGraph(path.join(fullDir, '.codegraph', 'graph.db'));
+    const incrGraph = readGraph(path.join(incrDir, '.codegraph', 'graph.db'));
+    expect(incrGraph.nodes.length).toBe(fullGraph.nodes.length);
+  });
+
+  it('produces the same edge count', () => {
+    const fullGraph = readGraph(path.join(fullDir, '.codegraph', 'graph.db'));
+    const incrGraph = readGraph(path.join(incrDir, '.codegraph', 'graph.db'));
+    expect(incrGraph.edges.length).toBe(fullGraph.edges.length);
+  });
+
+  it('produces identical nodes', () => {
+    const fullGraph = readGraph(path.join(fullDir, '.codegraph', 'graph.db'));
+    const incrGraph = readGraph(path.join(incrDir, '.codegraph', 'graph.db'));
+    expect(incrGraph.nodes).toEqual(fullGraph.nodes);
+  });
+
+  it('produces identical edges', () => {
+    const fullGraph = readGraph(path.join(fullDir, '.codegraph', 'graph.db'));
+    const incrGraph = readGraph(path.join(incrDir, '.codegraph', 'graph.db'));
+    expect(incrGraph.edges).toEqual(fullGraph.edges);
+  });
+});