From 0209f0c9a52ea105bc8dce49f46aaaf00a7786d4 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Wed, 24 Jul 2024 00:20:48 +0200
Subject: [PATCH 01/13] feat: add _get template function

---
 README.md                            | 24 +++++++++++++++++++++--
 cels/models/actions/action_render.py |  9 ++++++++-
 pyproject.toml                       |  2 +-
 tests/test_operation_render.py       | 29 ++++++++++++++++++++++++++++
 4 files changed, 60 insertions(+), 4 deletions(-)

diff --git a/README.md b/README.md
index bd76222..a632d10 100644
--- a/README.md
+++ b/README.md
@@ -551,13 +551,33 @@ new-foo:
   one: 1
   two: 2
 ```
-The 'link' operation always takes a path that employs the '.' and '[]' notation
+The `link` operation always takes a path that employs the `.` and `[]` notation
 to traverse through the dictionaries and lists within the input document. The
-initial '.' symbol signifies the root dictionary of the document. It's important
+initial `.` symbol signifies the root dictionary of the document. It's important
 to note that the path always refers to the unaltered input document, regardless
 of any other operations being performed. This means that the value indicated by
 the path will always be the original one.
 
+One limitation of the `link` operation is that it just copies a part of the
+input document as it is. If you need to reference a value from the input
+document but you also require to modify it in some form, you can use a combination
+of the `render` operation and `_get` template function. Here's an example:
+
+```yaml
+# input
+foo:
+  - one
+  - two
+
+# patch
+foo {render@1}: "{{ _get('.foo[1]') | upper }}"
+
+# output
+foo:
+  - one
+  - TWO
+```
+
 ### Patching dictionaries that are nested in lists
 
 If you need to modify a dictionary within a list, you can utilize the `patch`
diff --git a/cels/models/actions/action_render.py b/cels/models/actions/action_render.py
index 60d61d3..2b66592 100644
--- a/cels/models/actions/action_render.py
+++ b/cels/models/actions/action_render.py
@@ -1,6 +1,7 @@
 from jinja2 import Template
 from jinja2 import TemplateError
 
+from cels.models import Path
 from cels.exceptions import CelsInputError
 from cels.lib.safe import safe_set
 from cels.lib.safe import safe_traverse
@@ -13,13 +14,19 @@ def action_render(
 ):
     """Render a template using variables defined in the patch dictionary."""
 
+    def get(path: str):
+        """Get a value from the input dict given a dotted-notation path."""
+        input_path = Path(path)
+        value = input_path.get_value(root_input_dict)
+        return value
+
     # get container to modify
     container, index = safe_traverse(output_dict, key, indices)
 
     # get value
     try:
         template = Template(change_value)
-        rendered_value = template.render(**patch.get_all_vars())
+        rendered_value = template.render(_get=get, **patch.get_all_vars())
     except TemplateError as err:
         raise CelsInputError(f"Can't render provided template '{change_value}': {err}.")
 
diff --git a/pyproject.toml b/pyproject.toml
index 8700714..8458332 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "cels"
-version = "0.2.5"
+version = "0.3.0"
 authors = [
     {name="Andrés Sopeña Pérez", email="code@ehmm.org"},
 ]
diff --git a/tests/test_operation_render.py b/tests/test_operation_render.py
index cab248b..819ef78 100644
--- a/tests/test_operation_render.py
+++ b/tests/test_operation_render.py
@@ -111,3 +111,32 @@ def test_operation_render_built_in_filter():
         "bar": "10",
     }
     assert patch_dictionary(original, patch) == expected
+
+
+def test_operation_render_get_function():
+    """Retrieve a value from the original dictionary using the provided _get function."""
+    original = {
+        "foo": 100,
+    }
+    patch = {
+        "bar {render}": "The value is {{ _get('.foo') }}",
+    }
+    expected = {
+        "foo": 100,
+        "bar": "The value is 100",
+    }
+    assert patch_dictionary(original, patch) == expected
+
+
+def test_operation_render_get_function_with_nested_list():
+    """Retrieve a value from the original dictionary using the provided _get function."""
+    original = {
+        "section": ["foo", "bar"],
+    }
+    patch = {
+        "section {render@1}": "{{ _get('.section[1]') | upper }}",
+    }
+    expected = {
+        "section": ["foo", "BAR"],
+    }
+    assert patch_dictionary(original, patch) == expected

From 730eef842e57c6bcf9776134b5132e413d52bf29 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Wed, 24 Jul 2024 00:25:15 +0200
Subject: [PATCH 02/13] chore: remove rogue files

---
 README.md  | 4 ++++
 input.yaml | 8 --------
 patch.yaml | 5 -----
 3 files changed, 4 insertions(+), 13 deletions(-)
 delete mode 100644 input.yaml
 delete mode 100644 patch.yaml

diff --git a/README.md b/README.md
index a632d10..51c3395 100644
--- a/README.md
+++ b/README.md
@@ -578,6 +578,10 @@ foo:
   - TWO
 ```
 
+`_get()` takes as parameter the path of the value in the input document that
+you want to use (using the same dot notation than with `link`) and returns such
+a value.
+
 ### Patching dictionaries that are nested in lists
 
 If you need to modify a dictionary within a list, you can utilize the `patch`
diff --git a/input.yaml b/input.yaml
deleted file mode 100644
index 0b5b77a..0000000
--- a/input.yaml
+++ /dev/null
@@ -1,8 +0,0 @@
-# input
-foo:
-  - a
-  - b
-  - - c
-    - d
-    - x: 1
-      y: 2
diff --git a/patch.yaml b/patch.yaml
deleted file mode 100644
index 25f3e27..0000000
--- a/patch.yaml
+++ /dev/null
@@ -1,5 +0,0 @@
-# patch
-foo {delete_value@2}:
-    x: 1
-    y: 2
-

From ce0cba53bfe32d3464771fbaa35282736654df3f Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Sat, 21 Sep 2024 11:02:57 +0200
Subject: [PATCH 03/13] chore: run tests for Python 3.12

---
 .github/workflows/tests.yaml | 2 +-
 pyproject.toml               | 1 +
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index d4fd86a..7594659 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -14,7 +14,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]
+        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"]
 
     steps:
     - name: Checkout code
diff --git a/pyproject.toml b/pyproject.toml
index 8458332..28c7439 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -14,6 +14,7 @@ classifiers = [
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
     "License :: OSI Approved :: MIT License",
     "Operating System :: OS Independent",
 ]

From 38a28fb146a7947ad2f5c8f9656c25d40f2a4e58 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Sat, 26 Oct 2024 16:02:31 +0200
Subject: [PATCH 04/13] fix: don't modify logging configuration of client code

---
 cels/cli/patch.py |  3 ++-
 cels/logs.py      | 19 ++++++++++++-------
 justfile          |  3 +++
 3 files changed, 17 insertions(+), 8 deletions(-)

diff --git a/cels/cli/patch.py b/cels/cli/patch.py
index f66662f..7699008 100644
--- a/cels/cli/patch.py
+++ b/cels/cli/patch.py
@@ -4,6 +4,7 @@
 import click
 
 from cels.logs import log
+from cels.logs import configure_logging
 from cels import default
 from cels.services import patch_document
 from cels.exceptions import CelsError
@@ -103,7 +104,7 @@ def cels_patch(
     """Patch a yaml, json or toml file."""
 
     # setup logging
-    log.setLevel("DEBUG" if verbose else "WARN")
+    configure_logging("DEBUG" if verbose else "WARN")
 
     # infer and normalize input format
     if not input_format:
diff --git a/cels/logs.py b/cels/logs.py
index a7393f8..cb23a8d 100644
--- a/cels/logs.py
+++ b/cels/logs.py
@@ -1,12 +1,17 @@
 import logging
+
+from rich.console import Console
 from rich.logging import RichHandler
 
 
-log_format = "%(message)s"
-logging.basicConfig(
-    level="NOTSET",
-    format=log_format,
-    datefmt="",
-    handlers=[RichHandler(show_time=False, show_path=False)],
-)
+def configure_logging(level):
+    error_console = Console(stderr=True)
+    logging.basicConfig(
+        level=level,
+        format="%(message)s",
+        datefmt="",
+        handlers=[RichHandler(console=error_console, show_time=False, show_path=False)],
+    )
+
+
 log = logging.getLogger("cels")
diff --git a/justfile b/justfile
index cf0d06b..fff1251 100644
--- a/justfile
+++ b/justfile
@@ -21,6 +21,9 @@ export PYTHONPATH := project_dir
 @cli:
   ipython
 
+@setup:
+  pip install -e ".[dev]"
+
 run *params:
   #!/usr/bin/env python3
   from cels.cli import cels

From 3f992cb85c293c6a1ae1b376025af858f30ea9b5 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Sat, 26 Oct 2024 16:22:25 +0200
Subject: [PATCH 05/13] fix: add default NullHandler to library logger

---
 cels/logs.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/cels/logs.py b/cels/logs.py
index cb23a8d..9b709b3 100644
--- a/cels/logs.py
+++ b/cels/logs.py
@@ -15,3 +15,4 @@ def configure_logging(level):
 
 
 log = logging.getLogger("cels")
+log.addHandler(logging.NullHandler())

From bb2e76ac38961647dee4d4636dd82faa7570884c Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Sat, 26 Oct 2024 16:24:15 +0200
Subject: [PATCH 06/13] fix: bump version number

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 28c7439..a7ca3a0 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "cels"
-version = "0.3.0"
+version = "0.3.1"
 authors = [
     {name="Andrés Sopeña Pérez", email="code@ehmm.org"},
 ]

From 1a5e3727d29a579319afdffe53458542fcf27008 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Sun, 19 Jan 2025 02:23:34 +0100
Subject: [PATCH 07/13] fix: support YAML custom tags

---
 cels/lib/yaml_parsing/__init__.py    |   4 +
 cels/lib/yaml_parsing/dumpers.py     |  26 +++++++
 cels/lib/yaml_parsing/field_types.py |  17 ++++
 cels/lib/yaml_parsing/loaders.py     |  22 ++++++
 cels/services/patch_document.py      |  24 ++++--
 pyproject.toml                       |   2 +-
 tests/test_format_yaml.py            | 112 +++++++++++++++++++++++++++
 7 files changed, 201 insertions(+), 6 deletions(-)
 create mode 100644 cels/lib/yaml_parsing/__init__.py
 create mode 100644 cels/lib/yaml_parsing/dumpers.py
 create mode 100644 cels/lib/yaml_parsing/field_types.py
 create mode 100644 cels/lib/yaml_parsing/loaders.py

diff --git a/cels/lib/yaml_parsing/__init__.py b/cels/lib/yaml_parsing/__init__.py
new file mode 100644
index 0000000..ce8b1d3
--- /dev/null
+++ b/cels/lib/yaml_parsing/__init__.py
@@ -0,0 +1,4 @@
+from .loaders import SafePreserveTagLoader
+from .dumpers import SafePreserveTagDumper
+
+__all__ = ["SafePreserveTagLoader", "SafePreserveTagDumper"]
diff --git a/cels/lib/yaml_parsing/dumpers.py b/cels/lib/yaml_parsing/dumpers.py
new file mode 100644
index 0000000..382e18a
--- /dev/null
+++ b/cels/lib/yaml_parsing/dumpers.py
@@ -0,0 +1,26 @@
+import yaml
+
+from .field_types import TaggedScalar
+from .field_types import TaggedMapping
+from .field_types import TaggedSequence
+
+
+class SafePreserveTagDumper(yaml.SafeDumper):
+    pass
+
+
+def represent_tagged_scalar(dumper, data):
+    return dumper.represent_scalar(data.tag, str(data))
+
+
+def represent_tagged_sequence(dumper, data):
+    return dumper.represent_sequence(data.tag, data)
+
+
+def represent_tagged_mapping(dumper, data):
+    return dumper.represent_mapping(data.tag, data)
+
+
+SafePreserveTagDumper.add_representer(TaggedScalar, represent_tagged_scalar)
+SafePreserveTagDumper.add_representer(TaggedSequence, represent_tagged_sequence)
+SafePreserveTagDumper.add_representer(TaggedMapping, represent_tagged_mapping)
diff --git a/cels/lib/yaml_parsing/field_types.py b/cels/lib/yaml_parsing/field_types.py
new file mode 100644
index 0000000..4166fe1
--- /dev/null
+++ b/cels/lib/yaml_parsing/field_types.py
@@ -0,0 +1,17 @@
+class TaggedScalar(str):
+    def __new__(cls, value, tag):
+        obj = str.__new__(cls, value)
+        obj.tag = tag
+        return obj
+
+
+class TaggedSequence(list):
+    def __init__(self, value, tag):
+        super().__init__(value)
+        self.tag = tag
+
+
+class TaggedMapping(dict):
+    def __init__(self, value, tag):
+        super().__init__(value)
+        self.tag = tag
diff --git a/cels/lib/yaml_parsing/loaders.py b/cels/lib/yaml_parsing/loaders.py
new file mode 100644
index 0000000..9e36e52
--- /dev/null
+++ b/cels/lib/yaml_parsing/loaders.py
@@ -0,0 +1,22 @@
+import yaml
+
+from .field_types import TaggedScalar
+from .field_types import TaggedMapping
+from .field_types import TaggedSequence
+
+
+def preserve_tag(loader, tag_suffix, node):
+    tag = f"!{tag_suffix}"
+    if isinstance(node, yaml.ScalarNode):
+        return TaggedScalar(loader.construct_scalar(node), tag)
+    elif isinstance(node, yaml.SequenceNode):
+        return TaggedSequence(loader.construct_sequence(node), tag)
+    elif isinstance(node, yaml.MappingNode):
+        return TaggedMapping(loader.construct_mapping(node), tag)
+
+
+class SafePreserveTagLoader(yaml.SafeLoader):
+    pass
+
+
+SafePreserveTagLoader.add_multi_constructor("!", preserve_tag)
diff --git a/cels/services/patch_document.py b/cels/services/patch_document.py
index d537112..1a65f95 100644
--- a/cels/services/patch_document.py
+++ b/cels/services/patch_document.py
@@ -14,24 +14,36 @@
 
 from cels import default
 from cels.exceptions import CelsInputError
+from cels.lib.yaml_parsing import SafePreserveTagLoader
+from cels.lib.yaml_parsing import SafePreserveTagDumper
 
 from .patch_dictionary import patch_dictionary
 
 
 load_functions: Dict[str, Callable] = {
-    "yaml": yaml.safe_load,
+    "yaml": yaml.load,
     "json": json.loads,
     "toml": toml.loads,
 }
 
+load_parameters: Dict[str, Dict[str, Any]] = {
+    "yaml": {"Loader": SafePreserveTagLoader},
+    "json": {},
+    "toml": {},
+}
+
 dump_functions: Dict[str, Callable] = {
-    "yaml": yaml.safe_dump,
+    "yaml": yaml.dump,
     "json": json.dumps,
     "toml": tomli_w.dumps,
 }
 
 dump_parameters: Dict[str, Dict[str, Any]] = {
-    "yaml": {"sort_keys": False, "allow_unicode": True},
+    "yaml": {
+        "Dumper": SafePreserveTagDumper,
+        "sort_keys": False,
+        "allow_unicode": True,
+    },
     "json": {"indent": 2, "ensure_ascii": False},
     "toml": {},
 }
@@ -56,7 +68,8 @@ def patch_document(
 
     # get input dictionary
     try:
-        input_dict = load_functions[input_format](input_text) or {}
+        parameters = load_parameters[input_format]
+        input_dict = load_functions[input_format](input_text, **parameters) or {}
     except KeyError:
         raise CelsInputError(
             f"Error reading input text: '{input_format}' is not a valid format. "
@@ -67,7 +80,8 @@ def patch_document(
 
     # get patch dictionary
     try:
-        patch_dict = load_functions[patch_format](patch_text) or {}
+        parameters = load_parameters[patch_format]
+        patch_dict = load_functions[patch_format](patch_text, **parameters) or {}
     except KeyError:
         raise CelsInputError(
             f"Error reading patch: '{patch_format}' is not a valid format. "
diff --git a/pyproject.toml b/pyproject.toml
index a7ca3a0..3a9396b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "cels"
-version = "0.3.1"
+version = "0.3.2"
 authors = [
     {name="Andrés Sopeña Pérez", email="code@ehmm.org"},
 ]
diff --git a/tests/test_format_yaml.py b/tests/test_format_yaml.py
index 2266fa9..6266510 100644
--- a/tests/test_format_yaml.py
+++ b/tests/test_format_yaml.py
@@ -395,3 +395,115 @@ def test_yaml_special_chars():
 
     output = patch_yaml(input, patch).strip()
     assert output == result
+
+
+def test_yaml_custom_tags():
+    input = cleandoc(
+        """
+    database:
+      host: localhost
+      port: 5432
+      username: !secret 'db_username'
+      password: !secret 'db_password'
+
+    """
+    )
+    patch = cleandoc(
+        """
+    database:
+      host: localhost
+      port: 5555
+    """
+    )
+    result = cleandoc(
+        """
+
+    database:
+      host: localhost
+      port: 5555
+      username: !secret 'db_username'
+      password: !secret 'db_password'
+
+    """
+    )
+
+    output = patch_yaml(input, patch).strip()
+    assert output == result
+
+
+def test_yaml_custom_tags_override():
+    input = cleandoc(
+        """
+    foo:
+      username: !secret 'user 1'
+      password: !secret 'db_password'
+
+    """
+    )
+    patch = cleandoc(
+        """
+    foo:
+      username: !secret 'user 2'
+    """
+    )
+    result = cleandoc(
+        """
+
+    foo:
+      username: !secret 'user 2'
+      password: !secret 'db_password'
+
+    """
+    )
+
+    output = patch_yaml(input, patch).strip()
+    assert output == result
+
+
+def test_yaml_custom_tags_non_string():
+    input = cleandoc(
+        """
+    foo:
+      bar: !one_tag
+      - one
+      - two
+      - three
+      baz: !other_tag
+      - spam
+      - eggs
+      bat: !even_one_more_tag
+      - this
+      - that
+    """
+    )
+    patch = cleandoc(
+        """
+    foo:
+      baz:
+      - four
+      - five
+      bat: !new_tag
+      - six
+      - seven
+    """
+    )
+    result = cleandoc(
+        """
+
+    foo:
+      bar: !one_tag
+      - one
+      - two
+      - three
+      baz:
+      - four
+      - five
+      bat: !new_tag
+      - six
+      - seven
+
+    """
+    )
+
+    output = patch_yaml(input, patch).strip()
+    assert output == result

From bd85a2d7babd7de6f3f838f3816fea8c582ce030 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Sun, 19 Jan 2025 02:29:08 +0100
Subject: [PATCH 08/13] chore: remove support for Python 3.7 and 3.8

---
 .github/workflows/tests.yaml | 2 +-
 pyproject.toml               | 4 +---
 2 files changed, 2 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index 7594659..06984a5 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -14,7 +14,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
 
     steps:
     - name: Checkout code
diff --git a/pyproject.toml b/pyproject.toml
index 3a9396b..9cb4091 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,11 +6,9 @@ authors = [
 ]
 description = "Patch your YAML and JSON files."
 readme = "README.md"
-requires-python = ">=3.7"
+requires-python = ">=3.9"
 classifiers = [
     "Programming Language :: Python :: 3 :: Only",
-    "Programming Language :: Python :: 3.7",
-    "Programming Language :: Python :: 3.8",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",

From 6fc0a9c77087849b87a5ce00cd4f393c9c0b11c3 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Fri, 26 Sep 2025 23:06:57 +0200
Subject: [PATCH 09/13] feature: add new command line flags to control de
 output file

--in-place: overwrites the input file with the result
--sort-keys: sort dictionary keys alphabetically (in JSON and YAML).
--indent=N: set the indent size to N
---
 cels/cli/patch.py               |  35 ++
 cels/default.py                 |   2 +
 cels/lib/json_dumps/__init__.py |   3 +
 cels/lib/json_dumps/dumpers.py  |   6 +
 cels/services/patch_document.py |  33 +-
 requirements-dev.txt            |   6 -
 uv.lock                         | 579 ++++++++++++++++++++++++++++++++
 7 files changed, 647 insertions(+), 17 deletions(-)
 create mode 100644 cels/lib/json_dumps/__init__.py
 create mode 100644 cels/lib/json_dumps/dumpers.py
 delete mode 100644 requirements-dev.txt
 create mode 100644 uv.lock

diff --git a/cels/cli/patch.py b/cels/cli/patch.py
index 7699008..674162f 100644
--- a/cels/cli/patch.py
+++ b/cels/cli/patch.py
@@ -49,6 +49,23 @@
     type=click.Path(dir_okay=False, writable=True, path_type=Path),
     help="File to write the result to. If not provided, STDOUT is used.",
 )
+@click.option(
+    "-I",
+    "--in-place",
+    is_flag=True,
+    help="Overwrite the input file with the patched result.",
+)
+@click.option(
+    "--indent",
+    default=default.indent,
+    type=click.INT,
+    help="Indent to use in the output file.",
+)
+@click.option(
+    "--sort-keys",
+    is_flag=True,
+    help="Sort dictionary keys alphabetically in the output file (only for JSON and YAML).",
+)
 @click.option(
     "--separator",
     default=default.separator,
@@ -95,6 +112,9 @@ def cels_patch(
     input_format,
     patch_format,
     output_format,
+    in_place,
+    indent,
+    sort_keys,
     separator,
     left_marker,
     index_marker,
@@ -133,6 +153,19 @@ def cels_patch(
         output_format = input_format
     output_format = output_format.lower()
 
+    # set output file
+    if in_place:
+        if output_file != Path("-"):
+            raise click.UsageError(
+                "Options --in-place and --output-file are mutually exclusive."
+            )
+        elif input_format != output_format:
+            raise click.UsageError(
+                "Options --output-format can't be different from the input format when --in-place is used."
+            )
+        else:
+            output_file = input_file
+
     # compose output
     input_text = input_file.read_text(encoding="utf-8")
     patch_text = patch_file.read_text(encoding="utf-8")
@@ -143,6 +176,8 @@ def cels_patch(
             patch_format=patch_format,
             patch_text=patch_text,
             output_format=output_format,
+            indent=indent,
+            sort_keys=sort_keys,
             separator=separator,
             left_marker=left_marker,
             index_marker=index_marker,
diff --git a/cels/default.py b/cels/default.py
index a2f40d9..f57f816 100644
--- a/cels/default.py
+++ b/cels/default.py
@@ -1,3 +1,5 @@
+indent = 2
+sort_keys = False
 separator = " "
 left_marker = "{"
 index_marker = "@"
diff --git a/cels/lib/json_dumps/__init__.py b/cels/lib/json_dumps/__init__.py
new file mode 100644
index 0000000..21d3d83
--- /dev/null
+++ b/cels/lib/json_dumps/__init__.py
@@ -0,0 +1,3 @@
+from .dumpers import json_dumps
+
+__all__ = ["json_dumps"]
diff --git a/cels/lib/json_dumps/dumpers.py b/cels/lib/json_dumps/dumpers.py
new file mode 100644
index 0000000..1266c39
--- /dev/null
+++ b/cels/lib/json_dumps/dumpers.py
@@ -0,0 +1,6 @@
+import json
+
+
+def json_dumps(*args, **kwargs):
+    """Customize the standard Python JSON dumper."""
+    return json.dumps(*args, **kwargs) + "\n"
diff --git a/cels/services/patch_document.py b/cels/services/patch_document.py
index 1a65f95..cc296b0 100644
--- a/cels/services/patch_document.py
+++ b/cels/services/patch_document.py
@@ -16,6 +16,7 @@
 from cels.exceptions import CelsInputError
 from cels.lib.yaml_parsing import SafePreserveTagLoader
 from cels.lib.yaml_parsing import SafePreserveTagDumper
+from cels.lib.json_dumps import json_dumps
 
 from .patch_dictionary import patch_dictionary
 
@@ -34,20 +35,10 @@
 
 dump_functions: Dict[str, Callable] = {
     "yaml": yaml.dump,
-    "json": json.dumps,
+    "json": json_dumps,
     "toml": tomli_w.dumps,
 }
 
-dump_parameters: Dict[str, Dict[str, Any]] = {
-    "yaml": {
-        "Dumper": SafePreserveTagDumper,
-        "sort_keys": False,
-        "allow_unicode": True,
-    },
-    "json": {"indent": 2, "ensure_ascii": False},
-    "toml": {},
-}
-
 
 serialize_exceptions = (yaml.YAMLError, ValueError, TypeError)
 deserialize_exceptions = (yaml.YAMLError, toml.TOMLDecodeError, json.JSONDecodeError)
@@ -59,6 +50,8 @@ def patch_document(
     patch_format: str,
     patch_text: str,
     output_format: str,
+    indent: int = default.indent,
+    sort_keys: bool = default.sort_keys,
     separator: str = default.separator,
     left_marker: str = default.left_marker,
     index_marker: str = default.index_marker,
@@ -66,9 +59,27 @@ def patch_document(
 ) -> str:
     """Patch a text-based structured document."""
 
+    # all parameters
+    dump_parameters: Dict[str, Dict[str, Any]] = {
+        "yaml": {
+            "Dumper": SafePreserveTagDumper,
+            "indent": indent,
+            "sort_keys": sort_keys,
+            "allow_unicode": True,
+        },
+        "json": {"indent": indent, "sort_keys": sort_keys, "ensure_ascii": False},
+        "toml": {
+            "indent": indent,
+        },
+    }
+
     # get input dictionary
     try:
         parameters = load_parameters[input_format]
+        if "indent" in parameters:
+            parameters["indent"] = indent
+        if "sort_keys" in parameters:
+            parameters["sort_keys"] = sort_keys
         input_dict = load_functions[input_format](input_text, **parameters) or {}
     except KeyError:
         raise CelsInputError(
diff --git a/requirements-dev.txt b/requirements-dev.txt
deleted file mode 100644
index 4450e42..0000000
--- a/requirements-dev.txt
+++ /dev/null
@@ -1,6 +0,0 @@
-mypy
-pytest
-black
-types-PyYAML
-build
-twine
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 0000000..e1a3b4b
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,579 @@
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+requires-python = ">=3.9"
+
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+    { name = "click" },
+    { name = "mypy-extensions" },
+    { name = "packaging" },
+    { name = "pathspec" },
+    { name = "platformdirs" },
+    { name = "pytokens" },
+    { name = "tomli", marker = "python_full_version < '3.11'" },
+    { name = "typing-extensions", marker = "python_full_version < '3.11'" },
+]
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From 8f87ccb5401cf0d0473ccfb5c0bc663d77d99f04 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Fri, 26 Sep 2025 23:27:41 +0200
Subject: [PATCH 10/13] chore: enable uv and fix tests

---
 justfile                                      | 19 ++---
 tests/_fixtures/full-example-json/result.json |  2 +-
 tests/_fixtures/full-example-toml/result.toml | 78 +++++++++----------
 uv.lock                                       |  7 --
 4 files changed, 46 insertions(+), 60 deletions(-)

diff --git a/justfile b/justfile
index fff1251..3bf2503 100644
--- a/justfile
+++ b/justfile
@@ -7,26 +7,19 @@ export PYTHONPATH := project_dir
   just --list
 
 @test-all:
-  pytest --capture=no -o log_cli=false tests/
+  uv run pytest --capture=no -o log_cli=false tests/
 
 @test *params:
-  pytest -x --capture=no -o log_cli=true {{ params }}
+  uv run pytest -x --capture=no -o log_cli=true {{ params }}
 
 @format:
-  black {{ project_dir }}
+  uv run black {{ project_dir }}
 
 @type-check:
-  mypy {{ project_dir }}/cels/
+  uv run mypy {{ project_dir }}/cels/
 
 @cli:
-  ipython
+  uv run ipython
 
 @setup:
-  pip install -e ".[dev]"
-
-run *params:
-  #!/usr/bin/env python3
-  from cels.cli import cels
-  params = "{{ params }}".split()
-  cels(params)
-
+  uv run pip install -e ".[dev]"
diff --git a/tests/_fixtures/full-example-json/result.json b/tests/_fixtures/full-example-json/result.json
index 059e77f..d6a7487 100644
--- a/tests/_fixtures/full-example-json/result.json
+++ b/tests/_fixtures/full-example-json/result.json
@@ -93,4 +93,4 @@
   },
   "rendered": "some-text-100!",
   "only_in_patch": 2
-}
\ No newline at end of file
+}
diff --git a/tests/_fixtures/full-example-toml/result.toml b/tests/_fixtures/full-example-toml/result.toml
index e42653e..9f31a5c 100644
--- a/tests/_fixtures/full-example-toml/result.toml
+++ b/tests/_fixtures/full-example-toml/result.toml
@@ -3,65 +3,65 @@ in_both = 3
 in_both_but_changed = 5
 "new name" = 100
 multiple = [
-    "b",
-    "c",
+  "b",
+  "c",
 ]
 list1 = [
-    "foo",
+  "foo",
+  [
+    "one",
     [
-        "one",
-        [
-            "up",
-            "mid",
-            100,
-        ],
-        "three",
+      "up",
+      "mid",
+      100,
     ],
-    "baz",
+    "three",
+  ],
+  "baz",
 ]
 "list2.1" = [
-    "a",
-    "b",
-    "c",
+  "a",
+  "b",
+  "c",
 ]
 "list3.1" = [
-    "a",
-    "c",
-    "b",
+  "a",
+  "c",
+  "b",
 ]
 "list4.1" = [
-    "foo",
+  "foo",
+  [
+    "one",
     [
-        "one",
-        [
-            "up",
-            "mid",
-            "down",
-            100,
-        ],
+      "up",
+      "mid",
+      "down",
+      100,
     ],
+  ],
 ]
 "list2.2" = [
-    "a",
-    "b",
-    "c",
+  "a",
+  "b",
+  "c",
 ]
 "list3.2" = [
-    "a",
-    "c",
-    "b",
+  "a",
+  "c",
+  "b",
 ]
 "list4.2" = [
-    "foo",
+  "foo",
+  [
+    "one",
     [
-        "one",
-        [
-            "up",
-            "mid",
-            "down",
-            100,
-        ],
+      "up",
+      "mid",
+      "down",
+      100,
     ],
+  ],
 ]
 rendered = "some-text-100!"
 only_in_patch = 2
diff --git a/uv.lock b/uv.lock
index e1a3b4b..0da8f65 100644
--- a/uv.lock
+++ b/uv.lock
@@ -74,12 +74,6 @@ dependencies = [
 code-formatting = [
     { name = "black" },
 ]
-dev = [
-    { name = "black" },
-    { name = "mypy" },
-    { name = "pytest" },
-    { name = "types-pyyaml" },
-]
 publish = [
     { name = "build" },
 ]
@@ -95,7 +89,6 @@ type-checks = [
 requires-dist = [
     { name = "black", marker = "extra == 'code-formatting'" },
     { name = "build", marker = "extra == 'publish'" },
-    { name = "cels", extras = ["tests", "type-checks", "code-formatting"], marker = "extra == 'dev'" },
     { name = "click", specifier = ">=8.1.5" },
     { name = "jinja2", specifier = ">=3.1.2" },
     { name = "mypy", marker = "extra == 'type-checks'" },

From 2bff7b6ce4056f9855ce883c881adb058234ac3b Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Fri, 26 Sep 2025 23:29:27 +0200
Subject: [PATCH 11/13] chore: change version number

---
 cels/version.py | 2 +-
 pyproject.toml  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/cels/version.py b/cels/version.py
index ae73625..6a9beea 100644
--- a/cels/version.py
+++ b/cels/version.py
@@ -1 +1 @@
-__version__ = "0.1.3"
+__version__ = "0.4.0"
diff --git a/pyproject.toml b/pyproject.toml
index 9cb4091..55dc299 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "cels"
-version = "0.3.2"
+version = "0.4.0"
 authors = [
     {name="Andrés Sopeña Pérez", email="code@ehmm.org"},
 ]

From 62f49493398a81e4c5dbaf9ea641a6a495224134 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Fri, 26 Sep 2025 23:43:44 +0200
Subject: [PATCH 12/13] chore: upgrade github actions versions

---
 .github/workflows/publish.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/publish.yaml b/.github/workflows/publish.yaml
index d209e64..2061124 100644
--- a/.github/workflows/publish.yaml
+++ b/.github/workflows/publish.yaml
@@ -44,7 +44,7 @@ jobs:
 
     - name: Store the distribution packages
       if: steps.check-version.outputs.version != ''
-      uses: actions/upload-artifact@v3
+      uses: actions/upload-artifact@v4
       with:
         name: python-package-distributions
         path: dist/
@@ -63,7 +63,7 @@ jobs:
 
     steps:
     - name: Download all the dists
-      uses: actions/download-artifact@v3
+      uses: actions/download-artifact@v4
       with:
         name: python-package-distributions
         path: dist/
@@ -87,7 +87,7 @@ jobs:
 
     steps:
     - name: Download all the dists
-      uses: actions/download-artifact@v3
+      uses: actions/download-artifact@v4
       with:
         name: python-package-distributions
         path: dist/
@@ -109,7 +109,7 @@ jobs:
 
     steps:
     - name: Download all the dists
-      uses: actions/download-artifact@v3
+      uses: actions/download-artifact@v4
       with:
         name: python-package-distributions
         path: dist/

From 445e703f9c39d40e53fa573682b6dc6c6ef1f874 Mon Sep 17 00:00:00 2001
From: Andres Sopena Perez <andres.sopena@trivago.com>
Date: Fri, 26 Sep 2025 23:44:43 +0200
Subject: [PATCH 13/13] chore: change version number

---
 cels/version.py | 2 +-
 pyproject.toml  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/cels/version.py b/cels/version.py
index 6a9beea..3d26edf 100644
--- a/cels/version.py
+++ b/cels/version.py
@@ -1 +1 @@
-__version__ = "0.4.0"
+__version__ = "0.4.1"
diff --git a/pyproject.toml b/pyproject.toml
index 55dc299..5d93dcf 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "cels"
-version = "0.4.0"
+version = "0.4.1"
 authors = [
     {name="Andrés Sopeña Pérez", email="code@ehmm.org"},
 ]