SEtools/NAMESPACE at master · plger/SEtools · GitHub

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# Generated by roxygen2: do not edit by hand

export(aggSE)
export(castSE)
export(flattenPB)
export(log2FC)
export(mergeSEs)
export(resetAllSEtoolsOptions)
export(se2xls)
export(sehm)
export(svacor)
import(BiocParallel)
import(Matrix)
import(SummarizedExperiment)
import(pheatmap)
import(sechm)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,estimateSizeFactors)
importFrom(DESeq2,varianceStabilizingTransformation)
importFrom(DESeq2,vst)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,metadata)
importFrom(circlize,colorRamp2)
importFrom(data.table,data.table)
importFrom(data.table,rbindlist)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(methods,is)
importFrom(openxlsx,write.xlsx)
importFrom(sechm,safescale)
importFrom(sechm,sechm)
importFrom(stats,aggregate)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,setNames)
importFrom(sva,sva)
importFrom(sva,svaseq)