diff --git a/BUILD b/BUILD
index ea654ea..f5b8ec3 100644
--- a/BUILD
+++ b/BUILD
@@ -104,7 +104,7 @@ proto_library(
 )
 
 filegroup(
-    name = "jslib",
+    name = "proxy_wasm_intrinsics_js",
     srcs = [
         "proxy_wasm_intrinsics.js",
     ],
diff --git a/README.md b/README.md
index a178431..dd5e416 100644
--- a/README.md
+++ b/README.md
@@ -175,8 +175,8 @@ sudo make install
 git clone https://github.com/emscripten-core/emsdk.git
 cd emsdk
 ./emsdk update-tags
-./emsdk install 2.0.7
-./emsdk activate 2.0.7
+./emsdk install 3.1.1
+./emsdk activate 3.1.1
 
 source ./emsdk\_env.sh
 ```
@@ -189,7 +189,7 @@ It is possible later versions will work, e.g.
 ./emsdk activate latest
 ```
 
-However 2.0.7 is known to work.
+However 3.1.1 is known to work.
 
 ### Rebuilding the libprotobuf.a files
 
diff --git a/bazel/dep/deps.bzl b/bazel/dep/deps.bzl
index 0ec42e4..8d49457 100644
--- a/bazel/dep/deps.bzl
+++ b/bazel/dep/deps.bzl
@@ -12,35 +12,27 @@
 #  See the License for the specific language governing permissions and
 #  limitations under the License.
 
-load("@bazel_tools//tools/build_defs/repo:http.bzl", "http_archive", "http_file")
+load("@bazel_tools//tools/build_defs/repo:http.bzl", "http_archive")
+load("@bazel_tools//tools/build_defs/repo:utils.bzl", "maybe")
 
 def wasm_dependencies():
-    _http_archive(
+    maybe(
+        http_archive,
         name = "emscripten_toolchain",
         build_file = "@proxy_wasm_cpp_sdk//:emscripten-toolchain.BUILD",
         patch_cmds = [
-            "./emsdk install 2.0.7",
-            "./emsdk activate --embedded 2.0.7",
+            "./emsdk install 3.1.1",
+            "./emsdk activate --embedded 3.1.1",
         ],
-        strip_prefix = "emsdk-2.0.7",
-        url = "https://github.com/emscripten-core/emsdk/archive/2.0.7.tar.gz",
-        sha256 = "ce7a5c76e8b425aca874cea329fd9ac44b203b777053453b6a37b4496c5ce34f"
+        strip_prefix = "emsdk-3.1.1",
+        url = "https://github.com/emscripten-core/emsdk/archive/3.1.1.tar.gz",
+        sha256 = "3a4893f0bb8203469e1197aa235fc49ed6f5dd2d490e9244a6899a8ad860f3e6",
     )
 
-    _http_archive(
+    maybe(
+        http_archive,
         name = "com_google_protobuf",
         sha256 = "77ad26d3f65222fd96ccc18b055632b0bfedf295cb748b712a98ba1ac0b704b2",
         strip_prefix = "protobuf-3.17.3",
         url = "https://github.com/protocolbuffers/protobuf/releases/download/v3.17.3/protobuf-all-3.17.3.tar.gz",
     )
-
-def _http_archive(name, **kwargs):
-    existing_rule_keys = native.existing_rules().keys()
-    if name in existing_rule_keys:
-        # This repository has already been defined.
-        return
-
-    http_archive(
-        name = name,
-        **kwargs
-    )
diff --git a/bazel/wasm/wasm.bzl b/bazel/wasm/wasm.bzl
index eaa1b0e..4e6870a 100644
--- a/bazel/wasm/wasm.bzl
+++ b/bazel/wasm/wasm.bzl
@@ -68,15 +68,32 @@ wasm_cc_binary_rule = rule(
     attrs = _wasm_attrs(wasm_cc_transition),
 )
 
-def wasm_cc_binary(name, tags = [], **kwargs):
+def wasm_cc_binary(**kwargs):
+    fail("`wasm_cc_binary` is deprecated. Please use `proxy_wasm_cc_binary`.")
+
+def proxy_wasm_cc_binary(name, additional_linker_inputs = [], linkopts = [], tags = [], deps = [], **kwargs):
     wasm_name = "_wasm_" + name
     kwargs.setdefault("visibility", ["//visibility:public"])
     cc_binary(
         name = wasm_name,
+        additional_linker_inputs = additional_linker_inputs + [
+            "@proxy_wasm_cpp_sdk//:proxy_wasm_intrinsics_js",
+        ],
+        linkopts = linkopts + [
+            "--no-entry",
+            "--js-library=$(location @proxy_wasm_cpp_sdk//:proxy_wasm_intrinsics_js)",
+            "-sSTANDALONE_WASM",
+            "-sEXPORTED_FUNCTIONS=_malloc",
+        ],
         # Adding manual tag it won't be built in non-Wasm (e.g. x86_64 config)
         # when an wildcard is specified, but it will be built in Wasm configuration
         # when the wasm_binary below is built.
-        tags = ["manual"],
+        tags = tags + [
+            "manual",
+        ],
+        deps = deps + [
+            "@proxy_wasm_cpp_sdk//:proxy_wasm_intrinsics",
+        ],
         **kwargs
     )
 
diff --git a/example/BUILD b/example/BUILD
index 82b05a3..705b1cf 100644
--- a/example/BUILD
+++ b/example/BUILD
@@ -1,11 +1,8 @@
-load("//bazel/wasm:wasm.bzl", "wasm_cc_binary")
+load("//bazel/wasm:wasm.bzl", "proxy_wasm_cc_binary")
 
 licenses(["notice"])  # Apache 2
 
-wasm_cc_binary(
+proxy_wasm_cc_binary(
     name = "http_wasm_example.wasm",
     srcs = ["http_wasm_example.cc"],
-    deps = [
-        "@proxy_wasm_cpp_sdk//:proxy_wasm_intrinsics",
-    ],
 )
diff --git a/sdk_container.sh b/sdk_container.sh
index daa5aff..0cab9e4 100755
--- a/sdk_container.sh
+++ b/sdk_container.sh
@@ -51,8 +51,8 @@ rm -rf protobuf
 git clone https://github.com/emscripten-core/emsdk.git
 cd emsdk
 ./emsdk update-tags
-./emsdk install 2.0.7
-./emsdk activate 2.0.7
+./emsdk install 3.1.1
+./emsdk activate 3.1.1
 source ./emsdk_env.sh
 cd
 
diff --git a/toolchain/cc_toolchain_config.bzl b/toolchain/cc_toolchain_config.bzl
index 288215a..50ee150 100644
--- a/toolchain/cc_toolchain_config.bzl
+++ b/toolchain/cc_toolchain_config.bzl
@@ -79,9 +79,9 @@ def _impl(ctx):
                     flag_group(
                         flags = [
                             "-isystem",
-                            "external/emscripten_toolchain/upstream/emscripten/system/include/libcxx",
+                            "external/emscripten_toolchain/upstream/emscripten/cache/sysroot/include/",
                             "-isystem",
-                            "external/emscripten_toolchain/upstream/emscripten/system/include/libc",
+                            "external/emscripten_toolchain/upstream/lib/clang/14.0.0/include/",
                         ],
                     ),
                 ],
@@ -161,8 +161,8 @@ def _impl(ctx):
         # we just need to include them here so that bazel doesn't complain on
         # "this rule is missing dependency declarations for the following files included".
         cxx_builtin_include_directories = [
-            "external/emscripten_toolchain/upstream/emscripten/system/include/libcxx",
-            "external/emscripten_toolchain/upstream/emscripten/system/include/libc",
+            "external/emscripten_toolchain/upstream/emscripten/cache/sysroot/include/",
+            "external/emscripten_toolchain/upstream/lib/clang/14.0.0/include/",
         ],
         features = [cxx17_feature, no_canonical_prefixes_feature, opt_feature],
     )
diff --git a/toolchain/emcc.sh b/toolchain/emcc.sh
index b7e2181..e927fa2 100755
--- a/toolchain/emcc.sh
+++ b/toolchain/emcc.sh
@@ -18,7 +18,7 @@ set -euo pipefail
 
 . $(dirname $0)/common.sh
 
-emcc --no-entry -s EXPORTED_FUNCTIONS=['_malloc'] "$@"
+emcc "$@"
 
 # clang doesn't support `-no-canonical-system-headers` so sed it
 # find the .d file in the args and fix it:
@@ -27,7 +27,9 @@ for arg in "$@"
 do
     if [ "${arg: -2}" == ".d" ]; then
         echo Fixing $arg
-        sed -e 's%[^ ]*/external/emscripten_toolchain/upstream/emscripten/system/%external/emscripten_toolchain/upstream/emscripten/system/%' $arg > $arg.tmp
+        sed -e 's%[^ ]*/tmp/emscripten_cache/sysroot/include/%external/emscripten_toolchain/upstream/emscripten/cache/sysroot/include/%' $arg > $arg.tmp
+        mv $arg.tmp $arg
+        sed -e 's%[^ ]*/external/emscripten_toolchain/upstream/lib/clang/%external/emscripten_toolchain/upstream/lib/clang/%' $arg > $arg.tmp
         mv $arg.tmp $arg
         # some zlib headers are treated as system headers
         sed -e 's%[^ ]*/external/zlib/%external/zlib/%' $arg > $arg.tmp