From 15c6a8fd7e1943a4dee9cf7ee05d3cb15328ddd0 Mon Sep 17 00:00:00 2001
From: ajax146 <31014239+ajax146@users.noreply.github.com>
Date: Sat, 3 May 2025 23:01:48 -0400
Subject: [PATCH 1/9] Workflow dispatch on CI

---
 .github/workflows/ci.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index b31cfb58..401ad33e 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -3,8 +3,7 @@ name: Test and build
 on:
   push:
     branches: [ "main" ]
-  pull_request:
-    branches: [ "main" ]
+  workflow_dispatch:
 
 jobs:
   pyTest:

From 9782d95e30762f6ecd0a6f7fd1f06460c08c65a4 Mon Sep 17 00:00:00 2001
From: ajax146 <31014239+ajax146@users.noreply.github.com>
Date: Sat, 3 May 2025 23:03:12 -0400
Subject: [PATCH 2/9] More changes

---
 .github/dependabot.yml       | 2 +-
 .github/workflows/codeql.yml | 4 +---
 2 files changed, 2 insertions(+), 4 deletions(-)

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index 77f5d5e5..0c0695c6 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -8,5 +8,5 @@ updates:
   - package-ecosystem: "pip" # See documentation for possible values
     directory: "/" # Location of package manifests
     schedule:
-      interval: "daily"
+      interval: "weekly"
     open-pull-requests-limit: 10
diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 83873b36..fc9dba56 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -14,9 +14,7 @@ name: "CodeQL"
 on:
   push:
     branches: [ "main" ]
-  pull_request:
-    # The branches below must be a subset of the branches above
-    branches: [ "main" ]
+  workflow_dispatch:
   schedule:
     - cron: '31 18 * * 1'
 

From 72ac790cee4b34ed73619559a25884f0d7da39e9 Mon Sep 17 00:00:00 2001
From: ajax146 <31014239+ajax146@users.noreply.github.com>
Date: Sat, 3 May 2025 23:10:38 -0400
Subject: [PATCH 3/9] Test

---
 .github/workflows/ci.yml     | 4 ++++
 .github/workflows/codeql.yml | 4 ++++
 2 files changed, 8 insertions(+)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 401ad33e..507aed1f 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -4,6 +4,10 @@ on:
   push:
     branches: [ "main" ]
   workflow_dispatch:
+    inputs:
+      pr_branch:
+        description: 'Branch to run CI on'
+        required: true
 
 jobs:
   pyTest:
diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index fc9dba56..96d5d563 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -15,6 +15,10 @@ on:
   push:
     branches: [ "main" ]
   workflow_dispatch:
+    inputs:
+      pr_branch:
+        description: 'Branch to run CI on'
+        required: true
   schedule:
     - cron: '31 18 * * 1'
 

From 09fdc7db0c4786a525e2ec6abdb1a31474c1146e Mon Sep 17 00:00:00 2001
From: ajax146 <31014239+ajax146@users.noreply.github.com>
Date: Sat, 3 May 2025 23:10:52 -0400
Subject: [PATCH 4/9] Add file

---
 .github/workflows/comment-trigger.yml | 34 +++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)
 create mode 100644 .github/workflows/comment-trigger.yml

diff --git a/.github/workflows/comment-trigger.yml b/.github/workflows/comment-trigger.yml
new file mode 100644
index 00000000..64263b2a
--- /dev/null
+++ b/.github/workflows/comment-trigger.yml
@@ -0,0 +1,34 @@
+# .github/workflows/comment-trigger.yml
+name: PR Comment Trigger
+
+on:
+  issue_comment:
+    types: [created]
+
+jobs:
+  trigger-ci:
+    if: github.event.comment.body == '/run-ci' && github.event.issue.pull_request != null
+    runs-on: ubuntu-latest
+
+    permissions:
+      contents: read
+      actions: write
+      issues: read
+      pull-requests: read
+
+    steps:
+    - name: Extract PR branch name
+      id: pr
+      run: |
+        pr_url="${{ github.event.issue.pull_request.url }}"
+        branch=$(gh api "$pr_url" --jq '.head.ref')
+        echo "branch=$branch" >> "$GITHUB_OUTPUT"
+      env:
+        GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+    - name: Trigger CI workflow
+      run: |
+        gh workflow run ci.yml -f pr_branch=${{ steps.pr.outputs.branch }} -r ${{ steps.pr.outputs.branch }}
+        gh workflow run codeql.yml -f pr_branch=${{ steps.pr.outputs.branch }} -r ${{ steps.pr.outputs.branch }}
+      env:
+        GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}

From 51f2324ea739c3221ff0123f17a1aad97418578b Mon Sep 17 00:00:00 2001
From: ajax146 <31014239+ajax146@users.noreply.github.com>
Date: Sat, 3 May 2025 23:18:04 -0400
Subject: [PATCH 5/9] Try more AI code

---
 .github/workflows/ci.yml | 36 +++++++++++++++++++++++++++++++-----
 1 file changed, 31 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 507aed1f..212cac9c 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -3,14 +3,16 @@ name: Test and build
 on:
   push:
     branches: [ "main" ]
-  workflow_dispatch:
-    inputs:
-      pr_branch:
-        description: 'Branch to run CI on'
-        required: true
+  pull_request:
+    branches: [ "main" ]
+    types: [opened, synchronize, reopened, labeled, unlabeled, edited]
 
 jobs:
   pyTest:
+    if: |
+        contains(github.event.pull_request.title, '[run ci]') ||
+        contains(github.event.pull_request.body, '[run ci]') ||
+        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -34,6 +36,10 @@ jobs:
         python3.11 -m pytest tests/ -p no:warnings
 
   black:
+    if: |
+        contains(github.event.pull_request.title, '[run ci]') ||
+        contains(github.event.pull_request.body, '[run ci]') ||
+        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -51,6 +57,10 @@ jobs:
         black $(git rev-parse --show-toplevel) --check
 
   pyLint:
+    if: |
+        contains(github.event.pull_request.title, '[run ci]') ||
+        contains(github.event.pull_request.body, '[run ci]') ||
+        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -68,6 +78,10 @@ jobs:
         pylint $(git ls-files '*.py')
 
   lineEndingCheck:
+    if: |
+        contains(github.event.pull_request.title, '[run ci]') ||
+        contains(github.event.pull_request.body, '[run ci]') ||
+        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -84,6 +98,10 @@ jobs:
         fi
 
   flake8:
+    if: |
+        contains(github.event.pull_request.title, '[run ci]') ||
+        contains(github.event.pull_request.body, '[run ci]') ||
+        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -101,6 +119,10 @@ jobs:
         flake8 $(git rev-parse --show-toplevel)
 
   isort:
+    if: |
+        contains(github.event.pull_request.title, '[run ci]') ||
+        contains(github.event.pull_request.body, '[run ci]') ||
+        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -118,6 +140,10 @@ jobs:
         isort --check-only $(git rev-parse --show-toplevel)/ --profile black
 
   containerBuild:
+    if: |
+        contains(github.event.pull_request.title, '[run ci]') ||
+        contains(github.event.pull_request.body, '[run ci]') ||
+        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
     runs-on: ubuntu-latest
     needs: 
       - pyTest

From e96ea6a549472fa15d21473c958fe6e44cc65343 Mon Sep 17 00:00:00 2001
From: ajax146 <31014239+ajax146@users.noreply.github.com>
Date: Sat, 3 May 2025 23:20:54 -0400
Subject: [PATCH 6/9] Update CodeQL

---
 .github/workflows/codeql.yml          | 12 ++++++----
 .github/workflows/comment-trigger.yml | 34 ---------------------------
 2 files changed, 7 insertions(+), 39 deletions(-)
 delete mode 100644 .github/workflows/comment-trigger.yml

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 96d5d563..9583ca8f 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -14,15 +14,17 @@ name: "CodeQL"
 on:
   push:
     branches: [ "main" ]
-  workflow_dispatch:
-    inputs:
-      pr_branch:
-        description: 'Branch to run CI on'
-        required: true
+  pull_request:
+    branches: [ "main" ]
+    types: [opened, synchronize, reopened, labeled, unlabeled, edited]
   schedule:
     - cron: '31 18 * * 1'
 
 jobs:
+  if: |
+        contains(github.event.pull_request.title, '[run ci]') ||
+        contains(github.event.pull_request.body, '[run ci]') ||
+        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
   analyze:
     name: Analyze
     runs-on: ubuntu-latest
diff --git a/.github/workflows/comment-trigger.yml b/.github/workflows/comment-trigger.yml
deleted file mode 100644
index 64263b2a..00000000
--- a/.github/workflows/comment-trigger.yml
+++ /dev/null
@@ -1,34 +0,0 @@
-# .github/workflows/comment-trigger.yml
-name: PR Comment Trigger
-
-on:
-  issue_comment:
-    types: [created]
-
-jobs:
-  trigger-ci:
-    if: github.event.comment.body == '/run-ci' && github.event.issue.pull_request != null
-    runs-on: ubuntu-latest
-
-    permissions:
-      contents: read
-      actions: write
-      issues: read
-      pull-requests: read
-
-    steps:
-    - name: Extract PR branch name
-      id: pr
-      run: |
-        pr_url="${{ github.event.issue.pull_request.url }}"
-        branch=$(gh api "$pr_url" --jq '.head.ref')
-        echo "branch=$branch" >> "$GITHUB_OUTPUT"
-      env:
-        GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-
-    - name: Trigger CI workflow
-      run: |
-        gh workflow run ci.yml -f pr_branch=${{ steps.pr.outputs.branch }} -r ${{ steps.pr.outputs.branch }}
-        gh workflow run codeql.yml -f pr_branch=${{ steps.pr.outputs.branch }} -r ${{ steps.pr.outputs.branch }}
-      env:
-        GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}

From e153d6417a7504c9fb5bfb546228ac91c7cef9e6 Mon Sep 17 00:00:00 2001
From: ajax146 <31014239+ajax146@users.noreply.github.com>
Date: Sat, 3 May 2025 23:24:17 -0400
Subject: [PATCH 7/9] Update if statement

---
 .github/workflows/ci.yml     | 84 +++++++++++++++++++++++++++---------
 .github/workflows/codeql.yml | 12 ++++--
 2 files changed, 72 insertions(+), 24 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 212cac9c..629bd7c4 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -10,9 +10,15 @@ on:
 jobs:
   pyTest:
     if: |
-        contains(github.event.pull_request.title, '[run ci]') ||
-        contains(github.event.pull_request.body, '[run ci]') ||
-        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+      github.event_name == 'push' ||
+      (
+        github.event_name == 'pull_request' &&
+        (
+          contains(github.event.pull_request.title, '[run ci]') ||
+          contains(github.event.pull_request.body, '[run ci]') ||
+          contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+        )
+      )
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -37,9 +43,15 @@ jobs:
 
   black:
     if: |
-        contains(github.event.pull_request.title, '[run ci]') ||
-        contains(github.event.pull_request.body, '[run ci]') ||
-        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+      github.event_name == 'push' ||
+      (
+        github.event_name == 'pull_request' &&
+        (
+          contains(github.event.pull_request.title, '[run ci]') ||
+          contains(github.event.pull_request.body, '[run ci]') ||
+          contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+        )
+      )
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -58,9 +70,15 @@ jobs:
 
   pyLint:
     if: |
-        contains(github.event.pull_request.title, '[run ci]') ||
-        contains(github.event.pull_request.body, '[run ci]') ||
-        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+      github.event_name == 'push' ||
+      (
+        github.event_name == 'pull_request' &&
+        (
+          contains(github.event.pull_request.title, '[run ci]') ||
+          contains(github.event.pull_request.body, '[run ci]') ||
+          contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+        )
+      )
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -79,9 +97,15 @@ jobs:
 
   lineEndingCheck:
     if: |
-        contains(github.event.pull_request.title, '[run ci]') ||
-        contains(github.event.pull_request.body, '[run ci]') ||
-        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+      github.event_name == 'push' ||
+      (
+        github.event_name == 'pull_request' &&
+        (
+          contains(github.event.pull_request.title, '[run ci]') ||
+          contains(github.event.pull_request.body, '[run ci]') ||
+          contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+        )
+      )
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -99,9 +123,15 @@ jobs:
 
   flake8:
     if: |
-        contains(github.event.pull_request.title, '[run ci]') ||
-        contains(github.event.pull_request.body, '[run ci]') ||
-        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+      github.event_name == 'push' ||
+      (
+        github.event_name == 'pull_request' &&
+        (
+          contains(github.event.pull_request.title, '[run ci]') ||
+          contains(github.event.pull_request.body, '[run ci]') ||
+          contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+        )
+      )
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -120,9 +150,15 @@ jobs:
 
   isort:
     if: |
-        contains(github.event.pull_request.title, '[run ci]') ||
-        contains(github.event.pull_request.body, '[run ci]') ||
-        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+      github.event_name == 'push' ||
+      (
+        github.event_name == 'pull_request' &&
+        (
+          contains(github.event.pull_request.title, '[run ci]') ||
+          contains(github.event.pull_request.body, '[run ci]') ||
+          contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+        )
+      )
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v3
@@ -141,9 +177,15 @@ jobs:
 
   containerBuild:
     if: |
-        contains(github.event.pull_request.title, '[run ci]') ||
-        contains(github.event.pull_request.body, '[run ci]') ||
-        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+      github.event_name == 'push' ||
+      (
+        github.event_name == 'pull_request' &&
+        (
+          contains(github.event.pull_request.title, '[run ci]') ||
+          contains(github.event.pull_request.body, '[run ci]') ||
+          contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+        )
+      )
     runs-on: ubuntu-latest
     needs: 
       - pyTest
diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 9583ca8f..a9472b76 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -22,9 +22,15 @@ on:
 
 jobs:
   if: |
-        contains(github.event.pull_request.title, '[run ci]') ||
-        contains(github.event.pull_request.body, '[run ci]') ||
-        contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+      github.event_name == 'push' ||
+      (
+        github.event_name == 'pull_request' &&
+        (
+          contains(github.event.pull_request.title, '[run ci]') ||
+          contains(github.event.pull_request.body, '[run ci]') ||
+          contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+        )
+      )
   analyze:
     name: Analyze
     runs-on: ubuntu-latest

From fcc71886cdcc5215044417f2b8e505903c56dd18 Mon Sep 17 00:00:00 2001
From: ajax146 <31014239+ajax146@users.noreply.github.com>
Date: Sat, 3 May 2025 23:24:46 -0400
Subject: [PATCH 8/9] Fix codeql

---
 .github/workflows/codeql.yml | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index a9472b76..002b29f7 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -21,17 +21,17 @@ on:
     - cron: '31 18 * * 1'
 
 jobs:
-  if: |
-      github.event_name == 'push' ||
-      (
-        github.event_name == 'pull_request' &&
+  analyze:
+    if: |
+        github.event_name == 'push' ||
         (
-          contains(github.event.pull_request.title, '[run ci]') ||
-          contains(github.event.pull_request.body, '[run ci]') ||
-          contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+          github.event_name == 'pull_request' &&
+          (
+            contains(github.event.pull_request.title, '[run ci]') ||
+            contains(github.event.pull_request.body, '[run ci]') ||
+            contains(join(github.event.pull_request.labels.*.name), 'run-ci')
+          )
         )
-      )
-  analyze:
     name: Analyze
     runs-on: ubuntu-latest
     permissions:

From bbad3106216e5417e41bb5dfa375f3ee291c91bd Mon Sep 17 00:00:00 2001
From: ajax146 <31014239+ajax146@users.noreply.github.com>
Date: Sat, 3 May 2025 23:27:33 -0400
Subject: [PATCH 9/9] Fix PR types

---
 .github/workflows/ci.yml     | 2 +-
 .github/workflows/codeql.yml | 4 +---
 2 files changed, 2 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 629bd7c4..4db7c370 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -5,7 +5,7 @@ on:
     branches: [ "main" ]
   pull_request:
     branches: [ "main" ]
-    types: [opened, synchronize, reopened, labeled, unlabeled, edited]
+    types: [opened, labeled]
 
 jobs:
   pyTest:
diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 002b29f7..5b5cceb5 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -16,7 +16,7 @@ on:
     branches: [ "main" ]
   pull_request:
     branches: [ "main" ]
-    types: [opened, synchronize, reopened, labeled, unlabeled, edited]
+    types: [opened, labeled]
   schedule:
     - cron: '31 18 * * 1'
 
@@ -27,8 +27,6 @@ jobs:
         (
           github.event_name == 'pull_request' &&
           (
-            contains(github.event.pull_request.title, '[run ci]') ||
-            contains(github.event.pull_request.body, '[run ci]') ||
             contains(join(github.event.pull_request.labels.*.name), 'run-ci')
           )
         )