From 03e30a41f6228ed1421e02e8b1ea277d45c7477b Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 15:42:46 +0200 Subject: [PATCH 01/12] Drop Python 3.6 --- poetry.lock | 4611 +++++++++++++++++++++++++++++------------------- pyproject.toml | 7 +- 2 files changed, 2833 insertions(+), 1785 deletions(-) diff --git a/poetry.lock b/poetry.lock index 0d59e304..389a99d1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,3 +1,5 @@ +# This file is automatically @generated by Poetry and should not be changed by hand. + [[package]] name = "absl-py" version = "0.13.0" @@ -5,82 +7,221 @@ description = "Abseil Python Common Libraries, see https://github.com/abseil/abs category = "dev" optional = false python-versions = "*" +files = [ + {file = "absl-py-0.13.0.tar.gz", hash = "sha256:6953272383486044699fd0e9f00aad167a27e08ce19aae66c6c4b10e7e767793"}, + {file = "absl_py-0.13.0-py3-none-any.whl", hash = "sha256:62bd4e248ddb19d81aec8f9446b407ff37c8175c2ba88266a7afa9b4ce4a333b"}, +] 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">=3.7,<4.0", optional = true} -astroid = { version = "<=2.12", python = "<=3.7"} # This hint is vital for dependency resolution ¯\_(ツ)_/¯ +#astroid = { version = "<=2.12", python = "<=3.7"} # This hint is vital for dependency resolution ¯\_(ツ)_/¯ questionary = "^1.10.0" python-dateutil = "^2.8.2" [tool.poetry.dev-dependencies] pytest = [ - { version = ">=6.1.3", python = ">=3.6.2,<3.7" }, { version = ">=7.1.1", python = ">=3.7,<4.0" } ] -pylint = "^2.7.4" -black = "^20.8b1" -flake8 = "^3.9.1" -mypy = "^0.812" +pylint = ">=2.7.4" +black = ">=20.8b1" +flake8 = ">=3.9.1" +mypy = ">=0.812" coverage = "^5.5" -pre-commit = "^2.12.1" -jupyterlab = "^3.1.10" -isort = "^5.10.1" -absl-py = "^0.13.0" -Sphinx = "^4.2.0" +pre-commit = ">=2.12.1" +jupyterlab = ">=3.1.10,<4.0" +isort = ">=5.10.1" +absl-py = ">=0.13.0" +Sphinx = ">=4.2.0,<5" sphinx-autobuild = "^2021.3.14" furo = ">=2021.10.9" sphinx-autoapi = "^1.8.4" @@ -76,7 +75,7 @@ python-dateutil = "^2.8.2" nu = "cli.nu:nu" [tool.poetry.extras] -metrics = ["Shapely", "rasterio"] +metrics = ["Shapely", "rasterio", "scipy", "scikit-learn"] launch = ["scale-launch"] From 2cb1524471e8c16f5157353692ac85d653a4738f Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 16:34:19 +0200 Subject: [PATCH 03/12] Bump minor, CHANGELOG and adapt circleci --- .circleci/config.yml | 4 ++-- CHANGELOG.md | 8 ++++++++ pyproject.toml | 2 +- 3 files changed, 11 insertions(+), 3 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 099fa5f7..20c69f59 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -10,7 +10,7 @@ jobs: docker: # Important: Don't change this otherwise we will stop testing the earliest # python version we have to support. - - image: python:3.6-buster + - image: python:3.7-buster resource_class: medium parallelism: 6 steps: @@ -155,7 +155,7 @@ workflows: - test_client_installation: matrix: parameters: - python_version: ['3.6', '3.7', '3.8', '3.9', '3.10'] + python_version: ['3.7', '3.8', '3.9', '3.10', '3.11'] context: Nucleus build_test_publish: jobs: diff --git a/CHANGELOG.md b/CHANGELOG.md index 61d9ed8e..cc5fa5a0 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,14 @@ All notable changes to the [Nucleus Python Client](https://github.com/scaleapi/n The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [0.16.0](https://github.com/scaleapi/nucleus-python-client/releases/tag/v0.16.0) - 2023-07-20 + +### Removed +- Support for Python 3.6 - it is end of life for more than a year + +### Fixed +- Development environment for Python 3.11 + ## [0.15.10](https://github.com/scaleapi/nucleus-python-client/releases/tag/v0.15.10) - 2023-07-20 ### Added diff --git a/pyproject.toml b/pyproject.toml index ff032266..7fc5430f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -21,7 +21,7 @@ exclude = ''' [tool.poetry] name = "scale-nucleus" -version = "0.15.10" +version = "0.16.0" description = "The official Python client library for Nucleus, the Data Platform for AI" license = "MIT" authors = ["Scale AI Nucleus Team "] From 543290a45fa46c47bf6daf4e6119143a943b25cc Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 16:52:05 +0200 Subject: [PATCH 04/12] :nose: BLACK :nose: --- .circleci/config.yml | 2 +- nucleus/metrics/segmentation_utils.py | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 20c69f59..fc867ca9 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -37,7 +37,7 @@ jobs: - run: name: Black Formatting Check # Only validation, without re-formatting command: | - poetry run black --check -t py36 . + poetry run black --check . - run: name: Flake8 Lint Check # Uses setup.cfg for configuration command: | diff --git a/nucleus/metrics/segmentation_utils.py b/nucleus/metrics/segmentation_utils.py index b4b37eeb..0885c821 100644 --- a/nucleus/metrics/segmentation_utils.py +++ b/nucleus/metrics/segmentation_utils.py @@ -103,7 +103,7 @@ def fast_confusion_matrix( mask = (label_true >= 0) & (label_true < n_class) hist = np.bincount( n_class * label_true[mask].astype(int) + label_pred[mask], - minlength=n_class ** 2, + minlength=n_class**2, ).reshape(n_class, n_class) return hist diff --git a/pyproject.toml b/pyproject.toml index 7fc5430f..7e635fab 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -57,7 +57,7 @@ pytest = [ { version = ">=7.1.1", python = ">=3.7,<4.0" } ] pylint = ">=2.7.4" -black = ">=20.8b1" +black = "^23.3.0" flake8 = ">=3.9.1" mypy = ">=0.812" coverage = "^5.5" From f17846f5e932a4527bd27efbdf66b016839eb931 Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 16:54:50 +0200 Subject: [PATCH 05/12] Merge master --- CHANGELOG.md | 8 +++++++- nucleus/slice.py | 30 ++++++++++++++++++++++++++++++ 2 files changed, 37 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index cc5fa5a0..689ca850 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,13 +5,19 @@ All notable changes to the [Nucleus Python Client](https://github.com/scaleapi/n The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## [0.16.0](https://github.com/scaleapi/nucleus-python-client/releases/tag/v0.16.0) - 2023-07-20 +## [0.16.0](https://github.com/scaleapi/nucleus-python-client/releases/tag/v0.16.0) - 2023-09-18 ### Removed - Support for Python 3.6 - it is end of life for more than a year ### Fixed - Development environment for Python 3.11 +- +## [0.15.11](https://github.com/scaleapi/nucleus-python-client/releases/tag/v0.15.11) - 2023-09-15 + +### Added +- Added `slice.export_raw_json()` functionality to support raw export of object slices (annotations, predictions, item and scene level data). Currently does not support image slices. + ## [0.15.10](https://github.com/scaleapi/nucleus-python-client/releases/tag/v0.15.10) - 2023-07-20 diff --git a/nucleus/slice.py b/nucleus/slice.py index 1176720d..7a98fa9f 100644 --- a/nucleus/slice.py +++ b/nucleus/slice.py @@ -11,6 +11,7 @@ from nucleus.constants import EXPORT_FOR_TRAINING_KEY, EXPORTED_ROWS, ITEMS_KEY from nucleus.dataset_item import DatasetItem from nucleus.errors import NucleusAPIError +from nucleus.prediction import Prediction from nucleus.prediction import from_json as prediction_from_json from nucleus.scene import Scene from nucleus.utils import ( @@ -458,6 +459,35 @@ def export_predictions( ) return convert_export_payload(api_payload[EXPORTED_ROWS], True) + def export_raw_json( + self, + ) -> List[Union[DatasetItem, Annotation, Prediction, Scene]]: + """Exports object slices in a raw JSON format. Note that it currently does not support item-level slices. + + For each object or match in an object slice, this method exports the following information: + - The item that contains the object. + - The prediction and/or annotation (both, if the slice is based on IOU matches). + - If the object is part of a scene, it includes scene-level attributes in the export. + + Returns: + An iterable where each element is a dictionary containing JSON-formatted data. + :: + + List[{ + "item": DatasetItem (as JSON), + "annotation": BoxAnnotation/CuboidAnnotation (as JSON) + "prediction": BoxPrediction/CuboidPrediction (as JSON) + "scene": Scene (as JSON) + } + }] + """ + api_payload = self._client.make_request( + payload=None, + route=f"slice/{self.id}/export_raw_json", + requests_command=requests.get, + ) + return api_payload + def export_predictions_generator( self, model ) -> Iterable[Dict[str, Union[DatasetItem, Dict[str, List[Annotation]]]]]: From 4c4f88c4dcf6749e9442f36e961c35f1ee68f788 Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 17:05:41 +0200 Subject: [PATCH 06/12] Try pinning importlib-metadata --- poetry.lock | 30 +++++++++++++++--------------- pyproject.toml | 2 +- 2 files changed, 16 insertions(+), 16 deletions(-) diff --git a/poetry.lock b/poetry.lock index b99321b1..a44da326 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1210,14 +1210,14 @@ files = [ [[package]] name = "importlib-metadata" -version = "6.7.0" +version = "5.0.0" description = "Read metadata from Python packages" category = "main" optional = false python-versions = ">=3.7" files = [ - {file = "importlib_metadata-6.7.0-py3-none-any.whl", hash = "sha256:cb52082e659e97afc5dac71e79de97d8681de3aa07ff18578330904a9d18e5b5"}, - {file = "importlib_metadata-6.7.0.tar.gz", hash = "sha256:1aaf550d4f73e5d6783e7acb77aec43d49da8017410afae93822cc9cca98c4d4"}, + {file = "importlib_metadata-5.0.0-py3-none-any.whl", hash = "sha256:ddb0e35065e8938f867ed4928d0ae5bf2a53b7773871bfe6bcc7e4fcdc7dea43"}, + {file = "importlib_metadata-5.0.0.tar.gz", hash = "sha256:da31db32b304314d044d3c12c79bd59e307889b287ad12ff387b3500835fc2ab"}, ] [package.dependencies] @@ -1225,9 +1225,9 @@ typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" [package.extras] -docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] perf = ["ipython"] -testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"] +testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] [[package]] name = "importlib-resources" @@ -3917,25 +3917,25 @@ zstd = ["zstandard (>=0.18.0)"] [[package]] name = "virtualenv" -version = "20.24.5" +version = "20.21.1" description = "Virtual Python Environment builder" category = "dev" optional = false python-versions = ">=3.7" files = [ - {file = "virtualenv-20.24.5-py3-none-any.whl", hash = "sha256:b80039f280f4919c77b30f1c23294ae357c4c8701042086e3fc005963e4e537b"}, - {file = "virtualenv-20.24.5.tar.gz", hash = "sha256:e8361967f6da6fbdf1426483bfe9fca8287c242ac0bc30429905721cefbff752"}, + {file = "virtualenv-20.21.1-py3-none-any.whl", hash = "sha256:09ddbe1af0c8ed2bb4d6ed226b9e6415718ad18aef9fa0ba023d96b7a8356049"}, + {file = "virtualenv-20.21.1.tar.gz", hash = "sha256:4c104ccde994f8b108163cf9ba58f3d11511d9403de87fb9b4f52bf33dbc8668"}, ] [package.dependencies] -distlib = ">=0.3.7,<1" -filelock = ">=3.12.2,<4" -importlib-metadata = {version = ">=6.6", markers = "python_version < \"3.8\""} -platformdirs = ">=3.9.1,<4" +distlib = ">=0.3.6,<1" +filelock = ">=3.4.1,<4" +importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.8\""} +platformdirs = ">=2.4,<4" [package.extras] -docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] -test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"] +docs = ["furo (>=2023.3.27)", "proselint (>=0.13)", "sphinx (>=6.1.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=22.12)"] +test = ["covdefaults (>=2.3)", "coverage (>=7.2.3)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.3.1)", "pytest-env (>=0.8.1)", "pytest-freezegun (>=0.4.2)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)"] [[package]] name = "wcwidth" @@ -4287,4 +4287,4 @@ metrics = ["Shapely", "rasterio", "scipy", "scikit-learn"] [metadata] lock-version = "2.0" python-versions = ">=3.7,<4.0" -content-hash = "75c54882dcfe7cda13f731229692da1b9666824756456b13a76c6ee18bf4637e" +content-hash = "52c7ef90028af6ca6b4b90c1af164951614a27d56837bfab9df2a2f3f7247983" diff --git a/pyproject.toml b/pyproject.toml index 7e635fab..4c367121 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,7 +48,6 @@ Shapely = { version = ">=1.8.0", optional = true } rasterio = { version = ">=1.2.0", optional = true } Pillow = ">=7.1.2" scale-launch = { version = ">=0.1.0", python = ">=3.7,<4.0", optional = true} -#astroid = { version = "<=2.12", python = "<=3.7"} # This hint is vital for dependency resolution ¯\_(ツ)_/¯ questionary = "^1.10.0" python-dateutil = "^2.8.2" @@ -70,6 +69,7 @@ sphinx-autobuild = "^2021.3.14" furo = ">=2021.10.9" sphinx-autoapi = "^1.8.4" python-dateutil = "^2.8.2" +importlib-metadata = "<=5" # This hint is vital for installation in tests ¯\_(ツ)_/¯ [tool.poetry.scripts] nu = "cli.nu:nu" From 5ce484e792559319a028b1a616099b9317eb4eff Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 17:18:01 +0200 Subject: [PATCH 07/12] Change flake8 command --- .circleci/config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index fc867ca9..8518b3e4 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -41,7 +41,7 @@ jobs: - run: name: Flake8 Lint Check # Uses setup.cfg for configuration command: | - poetry run flake8 . --count --statistics + poetry run flake8 . - run: name: Pylint Lint Check # Uses .pylintrc for configuration command: | From a7d8d9b0b4238657e2ad58f343c969d79fcbae65 Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 17:29:14 +0200 Subject: [PATCH 08/12] Remove flake8 - use ruff --- .circleci/config.yml | 4 ++-- poetry.lock | 29 ++++++++++++++++++++++++++++- pyproject.toml | 9 +++++++-- 3 files changed, 37 insertions(+), 5 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 8518b3e4..04af178c 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -39,9 +39,9 @@ jobs: command: | poetry run black --check . - run: - name: Flake8 Lint Check # Uses setup.cfg for configuration + name: Ruff Lint Check # See pyproject.tooml [tool.ruff] command: | - poetry run flake8 . + poetry run ruff . - run: name: Pylint Lint Check # Uses .pylintrc for configuration command: | diff --git a/poetry.lock b/poetry.lock index a44da326..525ff078 100644 --- a/poetry.lock +++ b/poetry.lock @@ -3201,6 +3201,33 @@ typing-extensions = {version = ">=4.0.0,<5.0", markers = "python_version < \"3.9 [package.extras] jupyter = ["ipywidgets (>=7.5.1,<8.0.0)"] +[[package]] +name = "ruff" +version = "0.0.290" +description = "An extremely fast Python linter, written in Rust." +category = "dev" +optional = false +python-versions = ">=3.7" +files = [ + {file = "ruff-0.0.290-py3-none-macosx_10_7_x86_64.whl", hash = "sha256:0e2b09ac4213b11a3520221083866a5816616f3ae9da123037b8ab275066fbac"}, + {file = "ruff-0.0.290-py3-none-macosx_10_9_x86_64.macosx_11_0_arm64.macosx_10_9_universal2.whl", hash = "sha256:4ca6285aa77b3d966be32c9a3cd531655b3d4a0171e1f9bf26d66d0372186767"}, + {file = "ruff-0.0.290-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:35e3550d1d9f2157b0fcc77670f7bb59154f223bff281766e61bdd1dd854e0c5"}, + {file = "ruff-0.0.290-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:d748c8bd97874f5751aed73e8dde379ce32d16338123d07c18b25c9a2796574a"}, + {file = "ruff-0.0.290-py3-none-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:982af5ec67cecd099e2ef5e238650407fb40d56304910102d054c109f390bf3c"}, + {file = "ruff-0.0.290-py3-none-manylinux_2_17_ppc64.manylinux2014_ppc64.whl", hash = "sha256:bbd37352cea4ee007c48a44c9bc45a21f7ba70a57edfe46842e346651e2b995a"}, + {file = "ruff-0.0.290-py3-none-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:1d9be6351b7889462912e0b8185a260c0219c35dfd920fb490c7f256f1d8313e"}, + {file = "ruff-0.0.290-py3-none-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:75cdc7fe32dcf33b7cec306707552dda54632ac29402775b9e212a3c16aad5e6"}, + {file = "ruff-0.0.290-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:eb07f37f7aecdbbc91d759c0c09870ce0fb3eed4025eebedf9c4b98c69abd527"}, + {file = "ruff-0.0.290-py3-none-musllinux_1_2_aarch64.whl", hash = "sha256:2ab41bc0ba359d3f715fc7b705bdeef19c0461351306b70a4e247f836b9350ed"}, + {file = "ruff-0.0.290-py3-none-musllinux_1_2_armv7l.whl", hash = "sha256:150bf8050214cea5b990945b66433bf9a5e0cef395c9bc0f50569e7de7540c86"}, + {file = "ruff-0.0.290-py3-none-musllinux_1_2_i686.whl", hash = "sha256:75386ebc15fe5467248c039f5bf6a0cfe7bfc619ffbb8cd62406cd8811815fca"}, + {file = "ruff-0.0.290-py3-none-musllinux_1_2_x86_64.whl", hash = "sha256:ac93eadf07bc4ab4c48d8bb4e427bf0f58f3a9c578862eb85d99d704669f5da0"}, + {file = "ruff-0.0.290-py3-none-win32.whl", hash = "sha256:461fbd1fb9ca806d4e3d5c745a30e185f7cf3ca77293cdc17abb2f2a990ad3f7"}, + {file = "ruff-0.0.290-py3-none-win_amd64.whl", hash = "sha256:f1f49f5ec967fd5778813780b12a5650ab0ebcb9ddcca28d642c689b36920796"}, + {file = "ruff-0.0.290-py3-none-win_arm64.whl", hash = "sha256:ae5a92dfbdf1f0c689433c223f8dac0782c2b2584bd502dfdbc76475669f1ba1"}, + {file = "ruff-0.0.290.tar.gz", hash = "sha256:949fecbc5467bb11b8db810a7fa53c7e02633856ee6bd1302b2f43adcd71b88d"}, +] + [[package]] name = "scale-launch" version = "0.3.3" @@ -4287,4 +4314,4 @@ metrics = ["Shapely", "rasterio", "scipy", "scikit-learn"] [metadata] lock-version = "2.0" python-versions = ">=3.7,<4.0" -content-hash = "52c7ef90028af6ca6b4b90c1af164951614a27d56837bfab9df2a2f3f7247983" +content-hash = "91321f14e15be4fdcdeeed4c7c0f24458d9c70420e4b90197fc6b98e28efee41" diff --git a/pyproject.toml b/pyproject.toml index 4c367121..0118eb9a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,6 +19,10 @@ exclude = ''' ) ''' +[tool.ruff] +line-length = 79 +ignore = ["E501", "E741", "E731", "F401"] # Easy ignore for getting it running - can be reevaluated later + [tool.poetry] name = "scale-nucleus" version = "0.16.0" @@ -57,7 +61,6 @@ pytest = [ ] pylint = ">=2.7.4" black = "^23.3.0" -flake8 = ">=3.9.1" mypy = ">=0.812" coverage = "^5.5" pre-commit = ">=2.12.1" @@ -69,7 +72,6 @@ sphinx-autobuild = "^2021.3.14" furo = ">=2021.10.9" sphinx-autoapi = "^1.8.4" python-dateutil = "^2.8.2" -importlib-metadata = "<=5" # This hint is vital for installation in tests ¯\_(ツ)_/¯ [tool.poetry.scripts] nu = "cli.nu:nu" @@ -79,6 +81,9 @@ metrics = ["Shapely", "rasterio", "scipy", "scikit-learn"] launch = ["scale-launch"] +[tool.poetry.group.dev.dependencies] +ruff = "^0.0.290" + [tool.pytest.ini_options] markers = [ "integration: marks tests as slow (deselect with '-m \"not integration\"')", From cdbc42f08e92343980cbc91ed2fc23e837681b58 Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 17:33:11 +0200 Subject: [PATCH 09/12] :bomb: :nose: pipx run no_implicit_optional nucleus :nose: :bomb: --- nucleus/__init__.py | 8 ++++---- nucleus/connection.py | 3 ++- nucleus/dataset.py | 6 +++--- nucleus/metrics/cuboid_utils.py | 8 ++++---- nucleus/scene.py | 2 +- nucleus/slice.py | 2 +- nucleus/test_launch_integration.py | 16 ++++++++-------- 7 files changed, 23 insertions(+), 22 deletions(-) diff --git a/nucleus/__init__.py b/nucleus/__init__.py index e9ba5347..d3b8f1b8 100644 --- a/nucleus/__init__.py +++ b/nucleus/__init__.py @@ -170,7 +170,7 @@ def __init__( self, api_key: Optional[str] = None, use_notebook: bool = False, - endpoint: str = None, + endpoint: Optional[str] = None, ): self.api_key = self._set_api_key(api_key) self.tqdm_bar = tqdm.tqdm @@ -343,7 +343,7 @@ def get_job(self, job_id: str) -> AsyncJob: return AsyncJob.from_json(payload=payload, client=self) def get_model( - self, model_id: str = None, model_run_id: str = None + self, model_id: Optional[str] = None, model_run_id: Optional[str] = None ) -> Model: """Fetches a model by its ID. @@ -388,7 +388,7 @@ def delete_model_run(self, model_run_id: str): ) def create_dataset_from_project( - self, project_id: str, last_n_tasks: int = None, name: str = None + self, project_id: str, last_n_tasks: Optional[int] = None, name: Optional[str] = None ) -> Dataset: """Create a new dataset from an existing Scale or Rapid project. @@ -922,7 +922,7 @@ def delete_slice(self, slice_id: str) -> dict: @deprecated("Prefer calling Dataset.delete_annotations instead.") def delete_annotations( - self, dataset_id: str, reference_ids: list = None, keep_history=True + self, dataset_id: str, reference_ids: Optional[list] = None, keep_history=True ) -> AsyncJob: dataset = self.get_dataset(dataset_id) return dataset.delete_annotations(reference_ids, keep_history) diff --git a/nucleus/connection.py b/nucleus/connection.py index 162380dd..3684b5ab 100644 --- a/nucleus/connection.py +++ b/nucleus/connection.py @@ -6,12 +6,13 @@ from .errors import NucleusAPIError from .logger import logger from .retry_strategy import RetryStrategy +from typing import Optional class Connection: """Wrapper of HTTP requests to the Nucleus endpoint.""" - def __init__(self, api_key: str, endpoint: str = None): + def __init__(self, api_key: str, endpoint: Optional[str] = None): self.api_key = api_key self.endpoint = endpoint diff --git a/nucleus/dataset.py b/nucleus/dataset.py index 75aaff95..385ea0f4 100644 --- a/nucleus/dataset.py +++ b/nucleus/dataset.py @@ -1230,7 +1230,7 @@ def create_image_index(self): return AsyncJob.from_json(response, self._client) def create_object_index( - self, model_run_id: str = None, gt_only: bool = None + self, model_run_id: Optional[str] = None, gt_only: Optional[bool] = None ): """Creates or updates object index by generating embeddings for objects that do not already have embeddings. @@ -1439,7 +1439,7 @@ def export_embeddings( return api_payload # type: ignore def delete_annotations( - self, reference_ids: list = None, keep_history: bool = True + self, reference_ids: Optional[list] = None, keep_history: bool = True ) -> AsyncJob: """Deletes all annotations associated with the specified item reference IDs. @@ -1555,7 +1555,7 @@ def export_scale_task_info(self): ) return format_scale_task_info_response(response) - def calculate_evaluation_metrics(self, model, options: dict = None): + def calculate_evaluation_metrics(self, model, options: Optional[dict] = None): """Starts computation of evaluation metrics for a model on the dataset. To update matches and metrics calculated for a model on a given dataset you diff --git a/nucleus/metrics/cuboid_utils.py b/nucleus/metrics/cuboid_utils.py index 96337037..814436ed 100644 --- a/nucleus/metrics/cuboid_utils.py +++ b/nucleus/metrics/cuboid_utils.py @@ -1,5 +1,5 @@ from functools import wraps -from typing import Dict, List, Tuple +from typing import Optional, Dict, List, Tuple import numpy as np @@ -176,8 +176,8 @@ def get_batch_cuboid_corners( xyz: "np.ndarray", wlh: "np.ndarray", yaw: "np.ndarray", - pitch: "np.ndarray" = None, - roll: "np.ndarray" = None, + pitch: Optional["np.ndarray"] = None, + roll: Optional["np.ndarray"] = None, scale_convention: bool = True, ) -> "np.ndarray": """ @@ -211,7 +211,7 @@ def get_batch_cuboid_corners( def get_batch_rotation_matrices( - yaw: "np.ndarray", pitch: "np.ndarray" = None, roll: "np.ndarray" = None + yaw: "np.ndarray", pitch: Optional["np.ndarray"] = None, roll: Optional["np.ndarray"] = None ) -> "np.ndarray": if pitch is None: pitch = np.zeros_like(yaw) diff --git a/nucleus/scene.py b/nucleus/scene.py index 48c8aaeb..796d19f9 100644 --- a/nucleus/scene.py +++ b/nucleus/scene.py @@ -596,7 +596,7 @@ def validate(self): ), "No list of items is accepted when uploading a video_location unless you are using privacy mode" def add_item( - self, item: DatasetItem, index: int = None, update: bool = False + self, item: DatasetItem, index: Optional[int] = None, update: bool = False ) -> None: """Adds DatasetItem to the specified index for videos uploaded as an array of images. diff --git a/nucleus/slice.py b/nucleus/slice.py index 7a98fa9f..47a5c0ca 100644 --- a/nucleus/slice.py +++ b/nucleus/slice.py @@ -336,7 +336,7 @@ def info(self) -> dict: def append( self, - reference_ids: List[str] = None, + reference_ids: Optional[List[str]] = None, ) -> dict: """Appends existing DatasetItems from a Dataset to a Slice. diff --git a/nucleus/test_launch_integration.py b/nucleus/test_launch_integration.py index 8d92769c..d5c50f92 100644 --- a/nucleus/test_launch_integration.py +++ b/nucleus/test_launch_integration.py @@ -144,8 +144,8 @@ def _run_model( def visualize_box_launch_bundle( img_file: str, load_predict_fn: Callable, - load_model_fn: Callable = None, - model: Any = None, + load_model_fn: Optional[Callable] = None, + model: Optional[Any] = None, show_image: bool = False, max_annotations: int = 5, ) -> Image: @@ -194,8 +194,8 @@ def visualize_box_launch_bundle( def run_category_launch_bundle( img_file: str, load_predict_fn: Callable, - load_model_fn: Callable = None, - model: Any = None, + load_model_fn: Optional[Callable] = None, + model: Optional[Any] = None, ): """ Run this function locally to test if your image categorization model returns a format consumable by Launch + Nucleus @@ -218,8 +218,8 @@ def run_category_launch_bundle( def visualize_line_launch_bundle( img_file: str, load_predict_fn: Callable, - load_model_fn: Callable = None, - model: Any = None, + load_model_fn: Optional[Callable] = None, + model: Optional[Any] = None, show_image: bool = False, max_annotations: int = 5, ) -> Image: @@ -266,8 +266,8 @@ def visualize_line_launch_bundle( def visualize_polygon_launch_bundle( img_file: str, load_predict_fn: Callable, - load_model_fn: Callable = None, - model: Any = None, + load_model_fn: Optional[Callable] = None, + model: Optional[Any] = None, show_image: bool = False, max_annotations: int = 5, ) -> Image: From 1275acc389b9b5b42d01433febeb9dfc6c5393d5 Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 17:35:44 +0200 Subject: [PATCH 10/12] :sparkles: :nose: BLACK :nose: :sparkles: --- nucleus/__init__.py | 14 +++++++++++--- nucleus/dataset.py | 8 ++++++-- nucleus/metrics/cuboid_utils.py | 4 +++- nucleus/scene.py | 5 ++++- 4 files changed, 24 insertions(+), 7 deletions(-) diff --git a/nucleus/__init__.py b/nucleus/__init__.py index d3b8f1b8..72e6c772 100644 --- a/nucleus/__init__.py +++ b/nucleus/__init__.py @@ -343,7 +343,9 @@ def get_job(self, job_id: str) -> AsyncJob: return AsyncJob.from_json(payload=payload, client=self) def get_model( - self, model_id: Optional[str] = None, model_run_id: Optional[str] = None + self, + model_id: Optional[str] = None, + model_run_id: Optional[str] = None, ) -> Model: """Fetches a model by its ID. @@ -388,7 +390,10 @@ def delete_model_run(self, model_run_id: str): ) def create_dataset_from_project( - self, project_id: str, last_n_tasks: Optional[int] = None, name: Optional[str] = None + self, + project_id: str, + last_n_tasks: Optional[int] = None, + name: Optional[str] = None, ) -> Dataset: """Create a new dataset from an existing Scale or Rapid project. @@ -922,7 +927,10 @@ def delete_slice(self, slice_id: str) -> dict: @deprecated("Prefer calling Dataset.delete_annotations instead.") def delete_annotations( - self, dataset_id: str, reference_ids: Optional[list] = None, keep_history=True + self, + dataset_id: str, + reference_ids: Optional[list] = None, + keep_history=True, ) -> AsyncJob: dataset = self.get_dataset(dataset_id) return dataset.delete_annotations(reference_ids, keep_history) diff --git a/nucleus/dataset.py b/nucleus/dataset.py index 385ea0f4..5569856d 100644 --- a/nucleus/dataset.py +++ b/nucleus/dataset.py @@ -1230,7 +1230,9 @@ def create_image_index(self): return AsyncJob.from_json(response, self._client) def create_object_index( - self, model_run_id: Optional[str] = None, gt_only: Optional[bool] = None + self, + model_run_id: Optional[str] = None, + gt_only: Optional[bool] = None, ): """Creates or updates object index by generating embeddings for objects that do not already have embeddings. @@ -1555,7 +1557,9 @@ def export_scale_task_info(self): ) return format_scale_task_info_response(response) - def calculate_evaluation_metrics(self, model, options: Optional[dict] = None): + def calculate_evaluation_metrics( + self, model, options: Optional[dict] = None + ): """Starts computation of evaluation metrics for a model on the dataset. To update matches and metrics calculated for a model on a given dataset you diff --git a/nucleus/metrics/cuboid_utils.py b/nucleus/metrics/cuboid_utils.py index 814436ed..cb4cc9a1 100644 --- a/nucleus/metrics/cuboid_utils.py +++ b/nucleus/metrics/cuboid_utils.py @@ -211,7 +211,9 @@ def get_batch_cuboid_corners( def get_batch_rotation_matrices( - yaw: "np.ndarray", pitch: Optional["np.ndarray"] = None, roll: Optional["np.ndarray"] = None + yaw: "np.ndarray", + pitch: Optional["np.ndarray"] = None, + roll: Optional["np.ndarray"] = None, ) -> "np.ndarray": if pitch is None: pitch = np.zeros_like(yaw) diff --git a/nucleus/scene.py b/nucleus/scene.py index 796d19f9..4b888bd6 100644 --- a/nucleus/scene.py +++ b/nucleus/scene.py @@ -596,7 +596,10 @@ def validate(self): ), "No list of items is accepted when uploading a video_location unless you are using privacy mode" def add_item( - self, item: DatasetItem, index: Optional[int] = None, update: bool = False + self, + item: DatasetItem, + index: Optional[int] = None, + update: bool = False, ) -> None: """Adds DatasetItem to the specified index for videos uploaded as an array of images. From 1391c980603276ab404b9073ce8442d8c7688f09 Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 17:51:08 +0200 Subject: [PATCH 11/12] Use ruff in pre-commit --- .pre-commit-config.yaml | 2 +- .pylintrc | 1 + nucleus/connection.py | 2 +- nucleus/dataset_item.py | 2 +- nucleus/logger.py | 2 +- nucleus/metrics/cuboid_utils.py | 2 +- nucleus/metrics/segmentation_loader.py | 1 + poetry.lock | 95 ++++++++++++++------------ pyproject.toml | 3 + 9 files changed, 62 insertions(+), 48 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index ff8272fc..ebce0f67 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -12,7 +12,7 @@ repos: hooks: - id: system name: flake8 - entry: poetry run flake8 nucleus tests + entry: poetry run ruff nucleus pass_filenames: false language: system diff --git a/.pylintrc b/.pylintrc index a6e8a7e1..65351483 100644 --- a/.pylintrc +++ b/.pylintrc @@ -2,6 +2,7 @@ disable= bad-continuation, no-else-return, + no-name-in-module, too-few-public-methods, line-too-long, duplicate-code, diff --git a/nucleus/connection.py b/nucleus/connection.py index 3684b5ab..265a8763 100644 --- a/nucleus/connection.py +++ b/nucleus/connection.py @@ -1,4 +1,5 @@ import time +from typing import Optional import requests @@ -6,7 +7,6 @@ from .errors import NucleusAPIError from .logger import logger from .retry_strategy import RetryStrategy -from typing import Optional class Connection: diff --git a/nucleus/dataset_item.py b/nucleus/dataset_item.py index 2b1b2fc9..41ba1cc8 100644 --- a/nucleus/dataset_item.py +++ b/nucleus/dataset_item.py @@ -1,5 +1,5 @@ import json -import os.path +import os from collections import Counter from dataclasses import dataclass from enum import Enum diff --git a/nucleus/logger.py b/nucleus/logger.py index 4a809aa7..f792ae83 100644 --- a/nucleus/logger.py +++ b/nucleus/logger.py @@ -5,5 +5,5 @@ logger = logging.getLogger(__name__) logging.basicConfig() logging.getLogger( - requests.packages.urllib3.__package__ # pylint: disable=no-member + requests.packages.urllib3.__package__ # type: ignore # pylint: disable=no-member ).setLevel(logging.ERROR) diff --git a/nucleus/metrics/cuboid_utils.py b/nucleus/metrics/cuboid_utils.py index cb4cc9a1..7258c615 100644 --- a/nucleus/metrics/cuboid_utils.py +++ b/nucleus/metrics/cuboid_utils.py @@ -1,5 +1,5 @@ from functools import wraps -from typing import Optional, Dict, List, Tuple +from typing import Dict, List, Optional, Tuple import numpy as np diff --git a/nucleus/metrics/segmentation_loader.py b/nucleus/metrics/segmentation_loader.py index 46d46740..ff2a3429 100644 --- a/nucleus/metrics/segmentation_loader.py +++ b/nucleus/metrics/segmentation_loader.py @@ -25,6 +25,7 @@ class InMemoryLoader(SegmentationMaskLoader): def __init__(self, url_to_array: Dict[str, "np.ndarray"]): self.url_to_array = url_to_array + super().__init__() def fetch(self, url: str): array = self.url_to_array[url] diff --git a/poetry.lock b/poetry.lock index 525ff078..94fa55a7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1034,24 +1034,6 @@ files = [ docs = ["furo (>=2023.5.20)", "sphinx (>=7.0.1)", "sphinx-autodoc-typehints (>=1.23,!=1.23.4)"] testing = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "diff-cover (>=7.5)", "pytest (>=7.3.1)", "pytest-cov (>=4.1)", "pytest-mock (>=3.10)", "pytest-timeout (>=2.1)"] -[[package]] -name = "flake8" -version = "3.9.2" -description = "the modular source code checker: pep8 pyflakes and co" -category = "dev" -optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" -files = [ - {file = "flake8-3.9.2-py2.py3-none-any.whl", hash = "sha256:bf8fd333346d844f616e8d47905ef3a3384edae6b4e9beb0c5101e25e3110907"}, - {file = "flake8-3.9.2.tar.gz", hash = "sha256:07528381786f2a6237b061f6e96610a4167b226cb926e2aa2b6b1d78057c576b"}, -] - -[package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} -mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.7.0,<2.8.0" -pyflakes = ">=2.3.0,<2.4.0" - [[package]] name = "fqdn" version = "1.5.1" @@ -2636,18 +2618,6 @@ files = [ {file = "ptyprocess-0.7.0.tar.gz", hash = "sha256:5c5d0a3b48ceee0b48485e0c26037c0acd7d29765ca3fbb5cb3831d347423220"}, ] -[[package]] -name = "pycodestyle" -version = "2.7.0" -description = "Python style guide checker" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -files = [ - {file = "pycodestyle-2.7.0-py2.py3-none-any.whl", hash = "sha256:514f76d918fcc0b55c6680472f0a37970994e07bbb80725808c17089be302068"}, - {file = "pycodestyle-2.7.0.tar.gz", hash = "sha256:c389c1d06bf7904078ca03399a4816f974a1d590090fecea0c63ec26ebaf1cef"}, -] - [[package]] name = "pycparser" version = "2.21" @@ -2713,18 +2683,6 @@ typing-extensions = ">=4.2.0" dotenv = ["python-dotenv (>=0.10.4)"] email = ["email-validator (>=1.0.3)"] -[[package]] -name = "pyflakes" -version = "2.3.1" -description = "passive checker of Python programs" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -files = [ - {file = "pyflakes-2.3.1-py2.py3-none-any.whl", hash = "sha256:7893783d01b8a89811dd72d7dfd4d84ff098e5eed95cfa8905b22bbffe52efc3"}, - {file = "pyflakes-2.3.1.tar.gz", hash = "sha256:f5bc8ecabc05bb9d291eb5203d6810b49040f6ff446a756326104746cc00c1db"}, -] - [[package]] name = "pygments" version = "2.16.1" @@ -3869,6 +3827,57 @@ files = [ {file = "typed_ast-1.5.5.tar.gz", hash = "sha256:94282f7a354f36ef5dbce0ef3467ebf6a258e370ab33d5b40c249fa996e590dd"}, ] +[[package]] +name = "types-python-dateutil" +version = "2.8.19.14" +description = "Typing stubs for python-dateutil" +category = "dev" +optional = false +python-versions = "*" +files = [ + {file = "types-python-dateutil-2.8.19.14.tar.gz", hash = "sha256:1f4f10ac98bb8b16ade9dbee3518d9ace017821d94b057a425b069f834737f4b"}, + {file = "types_python_dateutil-2.8.19.14-py3-none-any.whl", hash = "sha256:f977b8de27787639986b4e28963263fd0e5158942b3ecef91b9335c130cb1ce9"}, +] + +[[package]] +name = "types-requests" +version = "2.31.0.2" +description = "Typing stubs for requests" +category = "dev" +optional = false +python-versions = "*" +files = [ + {file = "types-requests-2.31.0.2.tar.gz", hash = "sha256:6aa3f7faf0ea52d728bb18c0a0d1522d9bfd8c72d26ff6f61bfc3d06a411cf40"}, + {file = "types_requests-2.31.0.2-py3-none-any.whl", hash = "sha256:56d181c85b5925cbc59f4489a57e72a8b2166f18273fd8ba7b6fe0c0b986f12a"}, +] + +[package.dependencies] +types-urllib3 = "*" + +[[package]] +name = "types-setuptools" +version = "68.2.0.0" +description = "Typing stubs for setuptools" +category = "dev" +optional = false +python-versions = "*" +files = [ + {file = "types-setuptools-68.2.0.0.tar.gz", hash = "sha256:a4216f1e2ef29d089877b3af3ab2acf489eb869ccaf905125c69d2dc3932fd85"}, + {file = "types_setuptools-68.2.0.0-py3-none-any.whl", hash = "sha256:77edcc843e53f8fc83bb1a840684841f3dc804ec94562623bfa2ea70d5a2ba1b"}, +] + +[[package]] +name = "types-urllib3" +version = "1.26.25.14" +description = "Typing stubs for urllib3" +category = "dev" +optional = false +python-versions = "*" +files = [ + {file = "types-urllib3-1.26.25.14.tar.gz", hash = "sha256:229b7f577c951b8c1b92c1bc2b2fdb0b49847bd2af6d1cc2a2e3dd340f3bda8f"}, + {file = "types_urllib3-1.26.25.14-py3-none-any.whl", hash = "sha256:9683bbb7fb72e32bfe9d2be6e04875fbe1b3eeec3cbb4ea231435aa7fd6b4f0e"}, +] + [[package]] name = "typing-extensions" version = "4.7.1" @@ -4314,4 +4323,4 @@ metrics = ["Shapely", "rasterio", "scipy", "scikit-learn"] [metadata] lock-version = "2.0" python-versions = ">=3.7,<4.0" -content-hash = "91321f14e15be4fdcdeeed4c7c0f24458d9c70420e4b90197fc6b98e28efee41" +content-hash = "d8a2609b811b3cd43f5696cba9c44375e4ed22251f9ec61cb82e2ad50d898adf" diff --git a/pyproject.toml b/pyproject.toml index 0118eb9a..38692bbf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -83,6 +83,9 @@ launch = ["scale-launch"] [tool.poetry.group.dev.dependencies] ruff = "^0.0.290" +types-setuptools = "^68.2.0.0" +types-requests = "^2.31.0.2" +types-python-dateutil = "^2.8.19.14" [tool.pytest.ini_options] markers = [ From 915d06a61b91af1a2beba81871729bae9b8c7228 Mon Sep 17 00:00:00 2001 From: Gunnar Atli Thoroddsen Date: Mon, 18 Sep 2023 18:00:00 +0200 Subject: [PATCH 12/12] mypy :man_facepalming: --- nucleus/metrics/segmentation_to_poly_metrics.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nucleus/metrics/segmentation_to_poly_metrics.py b/nucleus/metrics/segmentation_to_poly_metrics.py index 9a305ade..d4a9e0ec 100644 --- a/nucleus/metrics/segmentation_to_poly_metrics.py +++ b/nucleus/metrics/segmentation_to_poly_metrics.py @@ -115,7 +115,7 @@ def call_metric( if prediction: if self.mode == SegToPolyMode.GENERATE_GT_FROM_POLY: pred_img = self.loader.fetch(prediction.mask_url) - ann_img, segments = rasterize_polygons_to_segmentation_mask( + ann_img, segments = rasterize_polygons_to_segmentation_mask( # type: ignore annotations.polygon_annotations + annotations.box_annotations, # type:ignore pred_img.shape,