From 77a253c4a2f444b1bed8bcfd29a41c4e4b041db0 Mon Sep 17 00:00:00 2001 From: "Philipp A." Date: Thu, 20 Nov 2025 09:14:42 +0100 Subject: [PATCH] Add category field --- packages/CellAnnotator/meta.yaml | 1 + packages/CellCharter/meta.yaml | 1 + packages/CellMapper/meta.yaml | 1 + packages/CellOracle/meta.yaml | 1 + packages/CellRank/meta.yaml | 1 + packages/Cell_BLAST/meta.yaml | 1 + packages/CellphoneDB/meta.yaml | 1 + packages/Cirrocumulus/meta.yaml | 1 + packages/DoubletDetection/meta.yaml | 1 + packages/GPTBioInsightor/meta.yaml | 1 + packages/GRnnData/meta.yaml | 1 + packages/LazySlide/meta.yaml | 1 + packages/Mowgli/meta.yaml | 1 + packages/Multivelo/meta.yaml | 1 + packages/PEAKQC/meta.yaml | 1 + packages/PILOT/meta.yaml | 1 + packages/ParTIpy/meta.yaml | 1 + packages/PathML/meta.yaml | 1 + packages/PyDESeq2/meta.yaml | 1 + packages/Rectangle/meta.yaml | 1 + packages/SC2Spa/meta.yaml | 1 + packages/SCALEX/meta.yaml | 1 + packages/STMiner/meta.yaml | 1 + packages/anndata-for-R/meta.yaml | 1 + packages/anndataR/meta.yaml | 1 + packages/annsel/meta.yaml | 1 + packages/benGRN/meta.yaml | 1 + packages/bento-tools/meta.yaml | 1 + packages/biolord/meta.yaml | 1 + packages/cell2location/meta.yaml | 1 + packages/cellxgene/meta.yaml | 1 + packages/dandelion/meta.yaml | 1 + packages/delnx/meta.yaml | 1 + packages/dynamo-release/meta.yaml | 1 + packages/epiScanpy/meta.yaml | 1 + packages/eschr/meta.yaml | 1 + packages/favapy/meta.yaml | 1 + packages/flowsom/meta.yaml | 1 + packages/gssnng/meta.yaml | 1 + packages/hotspot/meta.yaml | 1 + packages/infercnvpy/meta.yaml | 1 + packages/liana/meta.yaml | 1 + packages/maxspin/meta.yaml | 1 + packages/moscot/meta.yaml | 1 + packages/novae/meta.yaml | 1 + packages/omicverse/meta.yaml | 1 + packages/palantir/meta.yaml | 1 + packages/panpipes/meta.yaml | 1 + packages/pegasus/meta.yaml | 1 + packages/popV/meta.yaml | 1 + packages/pyLemur/meta.yaml | 1 + packages/pySCENIC/meta.yaml | 1 + packages/pyUCell/meta.yaml | 1 + packages/pychromVAR/meta.yaml | 1 + packages/pytximport/meta.yaml | 1 + packages/scCellFie/meta.yaml | 1 + packages/scDataLoader/meta.yaml | 1 + packages/scFates/meta.yaml | 1 + packages/scGen/meta.yaml | 1 + packages/scLiTr/meta.yaml | 1 + packages/scPRINT/meta.yaml | 1 + packages/scXpand/meta.yaml | 1 + packages/scanpro/meta.yaml | 1 + packages/schist/meta.yaml | 1 + packages/scib/meta.yaml | 1 + packages/scmcp/meta.yaml | 1 + packages/sctriangulate/meta.yaml | 1 + packages/scvelo/meta.yaml | 1 + packages/scxmatch/meta.yaml | 1 + packages/scyan/meta.yaml | 1 + packages/sfaira/meta.yaml | 1 + packages/sift-sc/meta.yaml | 1 + packages/sobolev-alignment/meta.yaml | 1 + packages/sopa/meta.yaml | 1 + packages/spatial-eggplant/meta.yaml | 1 + packages/spatialproteomics/meta.yaml | 1 + packages/spatiomic/meta.yaml | 1 + packages/symphonypy/meta.yaml | 1 + packages/tangram/meta.yaml | 1 + packages/vitessce/meta.yaml | 1 + packages/wsidata/meta.yaml | 1 + packages/zellkonverter/meta.yaml | 1 + scripts/src/ecosystem_scripts/schema.json | 11 +++++++++++ 83 files changed, 93 insertions(+) diff --git a/packages/CellAnnotator/meta.yaml b/packages/CellAnnotator/meta.yaml index bbca514c..bc84d0f2 100644 --- a/packages/CellAnnotator/meta.yaml +++ b/packages/CellAnnotator/meta.yaml @@ -16,3 +16,4 @@ version: v0.1.3 contact: - Marius1311 test_command: pip install -e '.[test]' && pytest +category: ecosystem diff --git a/packages/CellCharter/meta.yaml b/packages/CellCharter/meta.yaml index 2f347ecc..f77a73bc 100644 --- a/packages/CellCharter/meta.yaml +++ b/packages/CellCharter/meta.yaml @@ -19,3 +19,4 @@ contact: - marcovarrone test_command: | pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/CellMapper/meta.yaml b/packages/CellMapper/meta.yaml index cac7c074..32f903cb 100644 --- a/packages/CellMapper/meta.yaml +++ b/packages/CellMapper/meta.yaml @@ -15,3 +15,4 @@ version: v0.1.2 contact: - Marius1311 test_command: pip install -e '.[test]' && pytest +category: ecosystem diff --git a/packages/CellOracle/meta.yaml b/packages/CellOracle/meta.yaml index a1abfffd..503f0277 100644 --- a/packages/CellOracle/meta.yaml +++ b/packages/CellOracle/meta.yaml @@ -42,3 +42,4 @@ test_command: | pip install . # command to run tests pytest -v +category: ecosystem diff --git a/packages/CellRank/meta.yaml b/packages/CellRank/meta.yaml index c0e1a2f4..fa85b61a 100644 --- a/packages/CellRank/meta.yaml +++ b/packages/CellRank/meta.yaml @@ -23,3 +23,4 @@ contact: - WeilerP test_command: | pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/Cell_BLAST/meta.yaml b/packages/Cell_BLAST/meta.yaml index d42bb575..f0acb615 100644 --- a/packages/Cell_BLAST/meta.yaml +++ b/packages/Cell_BLAST/meta.yaml @@ -17,3 +17,4 @@ test_command: | pip install --upgrade pip flit flit install -s cd test && python test.py +category: ecosystem diff --git a/packages/CellphoneDB/meta.yaml b/packages/CellphoneDB/meta.yaml index fa55b7d6..dc3f69ec 100644 --- a/packages/CellphoneDB/meta.yaml +++ b/packages/CellphoneDB/meta.yaml @@ -31,3 +31,4 @@ contact: - zktuong test_command: | git clone git@github.com:ventolab/CellphoneDB.git && pip install cellphonedb && pip install pytest && cd CellphoneDB/cellphonedb/src/tests/ && python3 -m pytest method_tests.py +category: ecosystem diff --git a/packages/Cirrocumulus/meta.yaml b/packages/Cirrocumulus/meta.yaml index f57e7cd8..8a0ba053 100644 --- a/packages/Cirrocumulus/meta.yaml +++ b/packages/Cirrocumulus/meta.yaml @@ -18,3 +18,4 @@ contact: - gouwens test_command: | SETUPTOOLS_SCM_PRETEND_VERSION=0.0.1 pip install .[test,parquet] && pytest +category: ecosystem diff --git a/packages/DoubletDetection/meta.yaml b/packages/DoubletDetection/meta.yaml index adc849ef..38fbf16f 100644 --- a/packages/DoubletDetection/meta.yaml +++ b/packages/DoubletDetection/meta.yaml @@ -18,3 +18,4 @@ contact: - JonathanShor - ambrosejcarr test_command: pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/GPTBioInsightor/meta.yaml b/packages/GPTBioInsightor/meta.yaml index 7074e764..8bd6f75e 100644 --- a/packages/GPTBioInsightor/meta.yaml +++ b/packages/GPTBioInsightor/meta.yaml @@ -16,3 +16,4 @@ version: v0.3.0 contact: - huangsh test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/GRnnData/meta.yaml b/packages/GRnnData/meta.yaml index 85aae2e2..3ed6f843 100644 --- a/packages/GRnnData/meta.yaml +++ b/packages/GRnnData/meta.yaml @@ -19,3 +19,4 @@ version: v1.1.4 contact: - jkobject test_command: pip install . && make test +category: ecosystem diff --git a/packages/LazySlide/meta.yaml b/packages/LazySlide/meta.yaml index 514b5a82..52f4a4fc 100644 --- a/packages/LazySlide/meta.yaml +++ b/packages/LazySlide/meta.yaml @@ -16,3 +16,4 @@ contact: - eabila - afrendeiro test_command: uv run task test +category: ecosystem diff --git a/packages/Mowgli/meta.yaml b/packages/Mowgli/meta.yaml index 040ea83e..02e96f77 100644 --- a/packages/Mowgli/meta.yaml +++ b/packages/Mowgli/meta.yaml @@ -18,3 +18,4 @@ version: v0.2.0 contact: - gjhuizing test_command: pip install . && pytest +category: ecosystem diff --git a/packages/Multivelo/meta.yaml b/packages/Multivelo/meta.yaml index d5861b98..29abbdde 100644 --- a/packages/Multivelo/meta.yaml +++ b/packages/Multivelo/meta.yaml @@ -17,3 +17,4 @@ contact: - jw156605 - danielee0707 - jacobrepucci +category: ecosystem diff --git a/packages/PEAKQC/meta.yaml b/packages/PEAKQC/meta.yaml index 49384e4c..7b4350a2 100644 --- a/packages/PEAKQC/meta.yaml +++ b/packages/PEAKQC/meta.yaml @@ -16,3 +16,4 @@ contact: - jan1034 - mlooso test_command: pip install . && pytest +category: ecosystem diff --git a/packages/PILOT/meta.yaml b/packages/PILOT/meta.yaml index 1169fd41..55a7a222 100644 --- a/packages/PILOT/meta.yaml +++ b/packages/PILOT/meta.yaml @@ -33,3 +33,4 @@ test_command: | pip install pilotpy conda install pytest cd test && pytest test_pilot.py +category: ecosystem diff --git a/packages/ParTIpy/meta.yaml b/packages/ParTIpy/meta.yaml index 62145e3d..19bbc425 100644 --- a/packages/ParTIpy/meta.yaml +++ b/packages/ParTIpy/meta.yaml @@ -16,3 +16,4 @@ version: v0.0.04 contact: - psl-schaefer - leotenshii +category: ecosystem diff --git a/packages/PathML/meta.yaml b/packages/PathML/meta.yaml index ad428868..49553080 100644 --- a/packages/PathML/meta.yaml +++ b/packages/PathML/meta.yaml @@ -24,3 +24,4 @@ contact: - Yu-AnChen - jzhang1031 test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/PyDESeq2/meta.yaml b/packages/PyDESeq2/meta.yaml index d2424a1a..0f1d9156 100644 --- a/packages/PyDESeq2/meta.yaml +++ b/packages/PyDESeq2/meta.yaml @@ -20,3 +20,4 @@ contact: - vcabeli test_command: | pip install ."[dev]" && pytest +category: ecosystem diff --git a/packages/Rectangle/meta.yaml b/packages/Rectangle/meta.yaml index f2571aec..10456308 100644 --- a/packages/Rectangle/meta.yaml +++ b/packages/Rectangle/meta.yaml @@ -16,3 +16,4 @@ contact: - bernheder test_command: | pip install ."[dev,test]" && pytest +category: ecosystem diff --git a/packages/SC2Spa/meta.yaml b/packages/SC2Spa/meta.yaml index b166f275..53687c5e 100644 --- a/packages/SC2Spa/meta.yaml +++ b/packages/SC2Spa/meta.yaml @@ -20,3 +20,4 @@ version: v1.2 contact: - linbuliao test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/SCALEX/meta.yaml b/packages/SCALEX/meta.yaml index 41df02d6..25e442b6 100644 --- a/packages/SCALEX/meta.yaml +++ b/packages/SCALEX/meta.yaml @@ -17,3 +17,4 @@ version: v1.0.3 contact: - jsxlei test_command: pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/STMiner/meta.yaml b/packages/STMiner/meta.yaml index 8f220299..f2a0e45f 100644 --- a/packages/STMiner/meta.yaml +++ b/packages/STMiner/meta.yaml @@ -15,3 +15,4 @@ version: v1.1.0 contact: - PSSUN test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/anndata-for-R/meta.yaml b/packages/anndata-for-R/meta.yaml index 88b776cb..055fd8a2 100644 --- a/packages/anndata-for-R/meta.yaml +++ b/packages/anndata-for-R/meta.yaml @@ -11,3 +11,4 @@ license: MIT version: 0.7.5.5 contact: - rcannood +category: ecosystem diff --git a/packages/anndataR/meta.yaml b/packages/anndataR/meta.yaml index 15e2bdea..bb369d32 100644 --- a/packages/anndataR/meta.yaml +++ b/packages/anndataR/meta.yaml @@ -21,3 +21,4 @@ contact: - rcannood - LouiseDck logo: logo.svg +category: ecosystem diff --git a/packages/annsel/meta.yaml b/packages/annsel/meta.yaml index c1d14ca4..016dbf5c 100644 --- a/packages/annsel/meta.yaml +++ b/packages/annsel/meta.yaml @@ -18,3 +18,4 @@ tags: - utilities test_command: | pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/benGRN/meta.yaml b/packages/benGRN/meta.yaml index 74f67e35..dc768cb1 100644 --- a/packages/benGRN/meta.yaml +++ b/packages/benGRN/meta.yaml @@ -18,3 +18,4 @@ version: v1.2.1 contact: - jkobject test_command: pip install . && make test +category: ecosystem diff --git a/packages/bento-tools/meta.yaml b/packages/bento-tools/meta.yaml index 098d3264..f2799175 100644 --- a/packages/bento-tools/meta.yaml +++ b/packages/bento-tools/meta.yaml @@ -16,3 +16,4 @@ contact: - ckmah - noor01 test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/biolord/meta.yaml b/packages/biolord/meta.yaml index 4004d8d9..646dffa3 100644 --- a/packages/biolord/meta.yaml +++ b/packages/biolord/meta.yaml @@ -16,3 +16,4 @@ contact: - zoepiran test_command: | pip install ".[dev,test]" && pytest +category: ecosystem diff --git a/packages/cell2location/meta.yaml b/packages/cell2location/meta.yaml index 90f85a60..297cc961 100644 --- a/packages/cell2location/meta.yaml +++ b/packages/cell2location/meta.yaml @@ -22,3 +22,4 @@ contact: - emdann test_command: | pip install ".[dev]" && pytest +category: ecosystem diff --git a/packages/cellxgene/meta.yaml b/packages/cellxgene/meta.yaml index 9a4e5930..b3900017 100644 --- a/packages/cellxgene/meta.yaml +++ b/packages/cellxgene/meta.yaml @@ -27,3 +27,4 @@ contact: - mweiden test_command: | pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/dandelion/meta.yaml b/packages/dandelion/meta.yaml index 665c9e6a..bfa99e76 100644 --- a/packages/dandelion/meta.yaml +++ b/packages/dandelion/meta.yaml @@ -25,3 +25,4 @@ contact: - grst test_command: | pip install "." && pytest +category: ecosystem diff --git a/packages/delnx/meta.yaml b/packages/delnx/meta.yaml index 6793beb0..ec060be2 100644 --- a/packages/delnx/meta.yaml +++ b/packages/delnx/meta.yaml @@ -18,3 +18,4 @@ contact: - adaml9 test_command: | pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/dynamo-release/meta.yaml b/packages/dynamo-release/meta.yaml index 77d66dd9..5c761c99 100644 --- a/packages/dynamo-release/meta.yaml +++ b/packages/dynamo-release/meta.yaml @@ -19,3 +19,4 @@ contact: - dummyindex - yaz62 test_command: pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/epiScanpy/meta.yaml b/packages/epiScanpy/meta.yaml index 84125c5d..2c60044d 100644 --- a/packages/epiScanpy/meta.yaml +++ b/packages/epiScanpy/meta.yaml @@ -24,3 +24,4 @@ contact: - michalk8 - mvinyard test_command: pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/eschr/meta.yaml b/packages/eschr/meta.yaml index e701f61a..40ac20b5 100644 --- a/packages/eschr/meta.yaml +++ b/packages/eschr/meta.yaml @@ -18,3 +18,4 @@ version: v1.0.1 contact: - smgoggin10 test_command: pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/favapy/meta.yaml b/packages/favapy/meta.yaml index e5833484..56cbbf92 100644 --- a/packages/favapy/meta.yaml +++ b/packages/favapy/meta.yaml @@ -18,3 +18,4 @@ license: MIT version: v0.3.9.4 contact: - mikelkou +category: ecosystem diff --git a/packages/flowsom/meta.yaml b/packages/flowsom/meta.yaml index e386a4dc..c8a9c457 100644 --- a/packages/flowsom/meta.yaml +++ b/packages/flowsom/meta.yaml @@ -25,3 +25,4 @@ contact: - ysaeys - SofieVG test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/gssnng/meta.yaml b/packages/gssnng/meta.yaml index 10108901..6548cd02 100644 --- a/packages/gssnng/meta.yaml +++ b/packages/gssnng/meta.yaml @@ -21,3 +21,4 @@ contact: - redst4r test_command: | git clone git@github.com:IlyaLab/gssnng.git && pip install gssnng && pip install pytest && cd gssnng/ && pytest +category: ecosystem diff --git a/packages/hotspot/meta.yaml b/packages/hotspot/meta.yaml index b5b171a4..d86d5a3e 100644 --- a/packages/hotspot/meta.yaml +++ b/packages/hotspot/meta.yaml @@ -17,3 +17,4 @@ contact: - adamgayoso test_command: | pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/infercnvpy/meta.yaml b/packages/infercnvpy/meta.yaml index 210a27e3..383d925c 100644 --- a/packages/infercnvpy/meta.yaml +++ b/packages/infercnvpy/meta.yaml @@ -14,3 +14,4 @@ contact: - grst test_command: | pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/liana/meta.yaml b/packages/liana/meta.yaml index 7cf4754b..2e781340 100644 --- a/packages/liana/meta.yaml +++ b/packages/liana/meta.yaml @@ -19,3 +19,4 @@ test_command: | pip install poetry && \ poetry install --extras "full" && \ poetry run pytest --disable-warnings . +category: ecosystem diff --git a/packages/maxspin/meta.yaml b/packages/maxspin/meta.yaml index a5b62785..68bd66fe 100644 --- a/packages/maxspin/meta.yaml +++ b/packages/maxspin/meta.yaml @@ -16,3 +16,4 @@ version: v0.1.1 contact: - dcjones test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/moscot/meta.yaml b/packages/moscot/meta.yaml index 11ce5113..46decb5b 100644 --- a/packages/moscot/meta.yaml +++ b/packages/moscot/meta.yaml @@ -21,3 +21,4 @@ contact: - Marius1311 - zoepiran test_command: pip install -e '.[dev]' && pytest +category: ecosystem diff --git a/packages/novae/meta.yaml b/packages/novae/meta.yaml index 845bdc98..ed19c3bc 100644 --- a/packages/novae/meta.yaml +++ b/packages/novae/meta.yaml @@ -18,3 +18,4 @@ version: v0.2.1 contact: - quentinblampey test_command: pip install ".[dev]" && pytest +category: ecosystem diff --git a/packages/omicverse/meta.yaml b/packages/omicverse/meta.yaml index f367ffa8..92db0dba 100644 --- a/packages/omicverse/meta.yaml +++ b/packages/omicverse/meta.yaml @@ -21,3 +21,4 @@ contact: - DBinary - JuliaMYQ test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/palantir/meta.yaml b/packages/palantir/meta.yaml index a1f8319a..17bb6419 100644 --- a/packages/palantir/meta.yaml +++ b/packages/palantir/meta.yaml @@ -30,3 +30,4 @@ contact: - ManuSetty - katosh test_command: pip install -e '.' && pip install flake8 pytest coverage typing-extensions && pytest +category: ecosystem diff --git a/packages/panpipes/meta.yaml b/packages/panpipes/meta.yaml index b4b316f7..17f2b343 100644 --- a/packages/panpipes/meta.yaml +++ b/packages/panpipes/meta.yaml @@ -28,3 +28,4 @@ contact: - Zethson - wlason test_command: pip install -e '.[dev]' && pytest +category: ecosystem diff --git a/packages/pegasus/meta.yaml b/packages/pegasus/meta.yaml index 10646827..a56b5f1d 100644 --- a/packages/pegasus/meta.yaml +++ b/packages/pegasus/meta.yaml @@ -24,3 +24,4 @@ contact: - slowkow - jlchang test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/popV/meta.yaml b/packages/popV/meta.yaml index 811c5544..5793656b 100644 --- a/packages/popV/meta.yaml +++ b/packages/popV/meta.yaml @@ -14,3 +14,4 @@ version: v0.5.2 contact: - canergen test_command: pip install -e '.[test]' && pytest +category: ecosystem diff --git a/packages/pyLemur/meta.yaml b/packages/pyLemur/meta.yaml index 2f973742..499e2607 100644 --- a/packages/pyLemur/meta.yaml +++ b/packages/pyLemur/meta.yaml @@ -17,3 +17,4 @@ version: v0.1.0 contact: - const-ae test_command: pip install -e '.[dev]' && pytest +category: ecosystem diff --git a/packages/pySCENIC/meta.yaml b/packages/pySCENIC/meta.yaml index 5b6e4fa5..b98dac82 100644 --- a/packages/pySCENIC/meta.yaml +++ b/packages/pySCENIC/meta.yaml @@ -29,3 +29,4 @@ contact: - simonvh - loremendez test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/pyUCell/meta.yaml b/packages/pyUCell/meta.yaml index ba476e77..9865f231 100644 --- a/packages/pyUCell/meta.yaml +++ b/packages/pyUCell/meta.yaml @@ -23,3 +23,4 @@ contact: - mass-a - sjcarmona test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/pychromVAR/meta.yaml b/packages/pychromVAR/meta.yaml index 906f5ae9..1ca7a414 100644 --- a/packages/pychromVAR/meta.yaml +++ b/packages/pychromVAR/meta.yaml @@ -15,3 +15,4 @@ contact: - lzj1769 test_command: | test_command: pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/pytximport/meta.yaml b/packages/pytximport/meta.yaml index 0be8a8c0..424627bd 100644 --- a/packages/pytximport/meta.yaml +++ b/packages/pytximport/meta.yaml @@ -18,3 +18,4 @@ test_command: | pip install flit poetry && \ flit install --deps all && \ coverage run -m pytest +category: ecosystem diff --git a/packages/scCellFie/meta.yaml b/packages/scCellFie/meta.yaml index acda1610..8a63145e 100644 --- a/packages/scCellFie/meta.yaml +++ b/packages/scCellFie/meta.yaml @@ -21,3 +21,4 @@ test_command: | python -m pip install -r requirements.txt python -m pip install -e . pytest -vv --cov --cov-report xml +category: ecosystem diff --git a/packages/scDataLoader/meta.yaml b/packages/scDataLoader/meta.yaml index 8171fbe1..bb77545f 100644 --- a/packages/scDataLoader/meta.yaml +++ b/packages/scDataLoader/meta.yaml @@ -22,3 +22,4 @@ version: v1.2.2 contact: - jkobject test_command: pip install . && make test +category: ecosystem diff --git a/packages/scFates/meta.yaml b/packages/scFates/meta.yaml index 529bca03..ea8f7189 100644 --- a/packages/scFates/meta.yaml +++ b/packages/scFates/meta.yaml @@ -24,3 +24,4 @@ test_command: | pip install rpy2==3.4.2 pip install . pytest scFates/tests/test_w_plots.py +category: ecosystem diff --git a/packages/scGen/meta.yaml b/packages/scGen/meta.yaml index 39ddb4d6..4e760fcd 100644 --- a/packages/scGen/meta.yaml +++ b/packages/scGen/meta.yaml @@ -24,3 +24,4 @@ contact: - alirezaomidi - mumichae test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/scLiTr/meta.yaml b/packages/scLiTr/meta.yaml index 78b50814..60fe097c 100644 --- a/packages/scLiTr/meta.yaml +++ b/packages/scLiTr/meta.yaml @@ -17,3 +17,4 @@ contact: - serjisa test_command: | pip install . && pytest +category: ecosystem diff --git a/packages/scPRINT/meta.yaml b/packages/scPRINT/meta.yaml index 054a57a1..ab50d3bf 100644 --- a/packages/scPRINT/meta.yaml +++ b/packages/scPRINT/meta.yaml @@ -24,3 +24,4 @@ version: v1.6.2 contact: - jkobject test_command: pip install . && make test +category: ecosystem diff --git a/packages/scXpand/meta.yaml b/packages/scXpand/meta.yaml index da717948..b0665c65 100644 --- a/packages/scXpand/meta.yaml +++ b/packages/scXpand/meta.yaml @@ -23,3 +23,4 @@ contact: - yizhak-lab-ccg test_command: | pip install -e ".[dev]" && pytest --cov=src.scxpand tests +category: ecosystem diff --git a/packages/scanpro/meta.yaml b/packages/scanpro/meta.yaml index f3381f8b..8aec480f 100644 --- a/packages/scanpro/meta.yaml +++ b/packages/scanpro/meta.yaml @@ -17,3 +17,4 @@ contact: - yalayoubi - mlooso test_command: pip install . && pytest +category: ecosystem diff --git a/packages/schist/meta.yaml b/packages/schist/meta.yaml index 2265eaf8..1f6a49eb 100644 --- a/packages/schist/meta.yaml +++ b/packages/schist/meta.yaml @@ -17,3 +17,4 @@ contact: - leomorelli test_command: | pytest conftest.py +category: ecosystem diff --git a/packages/scib/meta.yaml b/packages/scib/meta.yaml index 09c4942d..a470e0c5 100644 --- a/packages/scib/meta.yaml +++ b/packages/scib/meta.yaml @@ -19,3 +19,4 @@ contact: - danielStrobl - mbuttner test_command: pip install ".[test,rpy2,harmony,scvi,scanorama]" && pytest +category: ecosystem diff --git a/packages/scmcp/meta.yaml b/packages/scmcp/meta.yaml index 1faae6a0..a4e5dfdc 100644 --- a/packages/scmcp/meta.yaml +++ b/packages/scmcp/meta.yaml @@ -14,3 +14,4 @@ version: v0.2.2 contact: - huangsh test_command: uv run --no-sync pytest +category: ecosystem diff --git a/packages/sctriangulate/meta.yaml b/packages/sctriangulate/meta.yaml index 63b1deaf..4ded158e 100644 --- a/packages/sctriangulate/meta.yaml +++ b/packages/sctriangulate/meta.yaml @@ -15,3 +15,4 @@ version: v0.12.0 contact: - frankligy test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/scvelo/meta.yaml b/packages/scvelo/meta.yaml index 21444610..a359f1d2 100644 --- a/packages/scvelo/meta.yaml +++ b/packages/scvelo/meta.yaml @@ -15,3 +15,4 @@ contact: - WeilerP - VolkerBergen test_command: pip install -e '.[dev]' && pytest +category: ecosystem diff --git a/packages/scxmatch/meta.yaml b/packages/scxmatch/meta.yaml index 82e2cf13..c599ad2b 100644 --- a/packages/scxmatch/meta.yaml +++ b/packages/scxmatch/meta.yaml @@ -24,3 +24,4 @@ contact: - dbblumenthal test_command: | conda install scxmatch -c conda-forge -c bioconda && git clone https://github.com/bionetslab/scxmatch.git && cd scxmatch/tests/ && python test_mwe.py +category: ecosystem diff --git a/packages/scyan/meta.yaml b/packages/scyan/meta.yaml index 42283b2f..1abe9a4c 100644 --- a/packages/scyan/meta.yaml +++ b/packages/scyan/meta.yaml @@ -20,3 +20,4 @@ version: v1.5.0 contact: - quentinblampey test_command: pip install ".[dev]" && pytest +category: ecosystem diff --git a/packages/sfaira/meta.yaml b/packages/sfaira/meta.yaml index a127c06f..62ad67bb 100644 --- a/packages/sfaira/meta.yaml +++ b/packages/sfaira/meta.yaml @@ -27,3 +27,4 @@ contact: - giovp - Wang-Cankun test_command: null +category: ecosystem diff --git a/packages/sift-sc/meta.yaml b/packages/sift-sc/meta.yaml index 3c728b51..77af9977 100644 --- a/packages/sift-sc/meta.yaml +++ b/packages/sift-sc/meta.yaml @@ -17,3 +17,4 @@ contact: - zoepiran test_command: | pip install ".[test]" && pytest +category: ecosystem diff --git a/packages/sobolev-alignment/meta.yaml b/packages/sobolev-alignment/meta.yaml index c3d02b5e..83055ce1 100644 --- a/packages/sobolev-alignment/meta.yaml +++ b/packages/sobolev-alignment/meta.yaml @@ -20,3 +20,4 @@ contact: - saroudant test_command: | pip install ."[dev]" && pytest +category: ecosystem diff --git a/packages/sopa/meta.yaml b/packages/sopa/meta.yaml index bd7f1843..364a8f0d 100644 --- a/packages/sopa/meta.yaml +++ b/packages/sopa/meta.yaml @@ -20,3 +20,4 @@ version: v1.0.0 contact: - quentinblampey test_command: pip install ".[dev,cellpose]" && pytest +category: ecosystem diff --git a/packages/spatial-eggplant/meta.yaml b/packages/spatial-eggplant/meta.yaml index d6daf503..d09db477 100644 --- a/packages/spatial-eggplant/meta.yaml +++ b/packages/spatial-eggplant/meta.yaml @@ -16,3 +16,4 @@ version: v0.2.3 contact: - almaan test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/spatialproteomics/meta.yaml b/packages/spatialproteomics/meta.yaml index bc7a94e7..855ca35b 100644 --- a/packages/spatialproteomics/meta.yaml +++ b/packages/spatialproteomics/meta.yaml @@ -20,3 +20,4 @@ contact: - MeyerBender - sagar87 test_command: pip install ".[all,dev]" && pytest +category: ecosystem diff --git a/packages/spatiomic/meta.yaml b/packages/spatiomic/meta.yaml index 286a3686..809938b2 100644 --- a/packages/spatiomic/meta.yaml +++ b/packages/spatiomic/meta.yaml @@ -18,3 +18,4 @@ version: v0.5.0 contact: - maltekuehl test_command: uv run pytest -m "not gpu" +category: ecosystem diff --git a/packages/symphonypy/meta.yaml b/packages/symphonypy/meta.yaml index 5506f86e..9734db0b 100644 --- a/packages/symphonypy/meta.yaml +++ b/packages/symphonypy/meta.yaml @@ -15,3 +15,4 @@ contact: - potulabe test_command: | pip install . && pytest +category: ecosystem diff --git a/packages/tangram/meta.yaml b/packages/tangram/meta.yaml index f17d1cfd..4a01dc5f 100644 --- a/packages/tangram/meta.yaml +++ b/packages/tangram/meta.yaml @@ -20,3 +20,4 @@ contact: - gaddamshreya - hejinhuang test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/vitessce/meta.yaml b/packages/vitessce/meta.yaml index 8461df60..9d3573a0 100644 --- a/packages/vitessce/meta.yaml +++ b/packages/vitessce/meta.yaml @@ -32,3 +32,4 @@ contact: - romanhaa - will-moore test_command: pip install "." && pytest +category: ecosystem diff --git a/packages/wsidata/meta.yaml b/packages/wsidata/meta.yaml index b5fd4ad8..cdddab0b 100644 --- a/packages/wsidata/meta.yaml +++ b/packages/wsidata/meta.yaml @@ -15,3 +15,4 @@ contact: - eabila - afrendeiro test_command: uv run task test +category: ecosystem diff --git a/packages/zellkonverter/meta.yaml b/packages/zellkonverter/meta.yaml index 752f15a6..653082e5 100644 --- a/packages/zellkonverter/meta.yaml +++ b/packages/zellkonverter/meta.yaml @@ -18,3 +18,4 @@ version: 1.20.0 contact: - lazappi logo: logo.svg +category: ecosystem diff --git a/scripts/src/ecosystem_scripts/schema.json b/scripts/src/ecosystem_scripts/schema.json index aeefcbcc..af6e40b9 100644 --- a/scripts/src/ecosystem_scripts/schema.json +++ b/scripts/src/ecosystem_scripts/schema.json @@ -225,6 +225,16 @@ "test_command": { "description": "A shell command to install the package and execute the tests, assuming you are inside a freshly cloned copy of the package repository. Often this will be `pip install \".[test]\" && pytest`", "type": ["string", "null"] + }, + "category": { + "type": "string", + "enum": [ + "core-framework", + "core-datastructure", + "core-infrastructure", + "ecosystem" + ], + "description": "Package category for the website and statistics." } }, "required": [ @@ -236,6 +246,7 @@ "license", "tags", "version", + "category", "contact" ] }