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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 434 46

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 260 39

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 179 29

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 168 52

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 112 31

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 32

Repositories

Showing 10 of 185 repositories
  • osteoid Public

    Skeleton object used for representing neurons, adjacent cells, and organelles.

    seung-lab/osteoid’s past year of commit activity
    C++ 3 BSD-3-Clause 2 2 1 Updated Dec 6, 2025
  • DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    seung-lab/DracoPy’s past year of commit activity
    C++ 112 Apache-2.0 31 10 2 Updated Dec 5, 2025
  • zmesh Public

    Marching Cubes & Mesh Simplification on multi-label 3D images.

    seung-lab/zmesh’s past year of commit activity
    C++ 68 GPL-3.0 9 2 1 Updated Dec 5, 2025
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 14 BSD-3-Clause 1 11 1 Updated Dec 4, 2025
  • mapbuffer Public

    Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.

    seung-lab/mapbuffer’s past year of commit activity
    Python 10 BSD-3-Clause 0 3 0 Updated Dec 4, 2025
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 43 BSD-3-Clause 8 16 0 Updated Dec 4, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 24 Apache-2.0 347 91 37 Updated Dec 4, 2025
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 62 GPL-3.0 23 27 3 Updated Dec 3, 2025
  • euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    seung-lab/euclidean-distance-transform-3d’s past year of commit activity
    C++ 260 LGPL-3.0 39 7 0 Updated Nov 27, 2025
  • seuron Public Forked from wongwill86/air-tasks

    SEUnglab neuRON pipeline

    seung-lab/seuron’s past year of commit activity
    Python 7 MIT 6 1 (1 issue needs help) 0 Updated Nov 23, 2025