diff --git a/.docs/requirements.txt b/.docs/requirements.txt
new file mode 100644
index 00000000..8de4d0f9
--- /dev/null
+++ b/.docs/requirements.txt
@@ -0,0 +1,8 @@
+sphinx
+sphinxcontrib-napoleon
+sphinx-argparse
+sphinx_rtd_theme
+docutils==0.12
+recommonmark
+configargparse
+appdirs
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index d0b8a912..8f18f9ab 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -13,6 +13,11 @@ jobs:
     steps:
       - uses: actions/checkout@v2
 
+      - name: Check Spelling
+        uses: crate-ci/typos@592b36d23c62cb378f6097a292bc902ee73f93ef # version 1.0.4
+        with:
+          files: ./spython ./.docs ./README.md
+
       - name: Setup black linter
         run: conda create --quiet --name black pyflakes
 
diff --git a/docs/api/_sources/changelog.md.txt b/docs/api/_sources/changelog.md.txt
index 2ef51f2b..95c5a3b9 100644
--- a/docs/api/_sources/changelog.md.txt
+++ b/docs/api/_sources/changelog.md.txt
@@ -17,6 +17,16 @@ The client here will eventually be released as "spython" (and eventually to
 singularity on pypi), and the versions here will coincide with these releases.
 
 ## [master](https://github.com/singularityhub/singularity-cli/tree/master)
+ - version checks removed to support Singularity 3.x and above (0.2.0)
+ - adding support for SIF (oras pull) (0.1.18)
+ - updating CI/tests and fixing deprecations (warnings) (0.1.17)
+ - fixing bug with defining comments earlier (0.1.16)
+ - ensure options and args from instance init are honored (0.1.15)
+ - choose output for stream_command (0.1.14)
+ - adding support to pull from a url (0.1.13)
+ - add more verbosity to instance start/stop (0.1.12)
+ - adding more verbosity to running commands (0.1.11)
+ - log error paths are optional (0.1.1)
  - instance list doesn't always include container_image (0.1.0)
  - add sudo_options option to Instance.start/stop and Client.execute (0.0.85)
    - add environ option to Instance.start and Client.execute for passing env variables
diff --git a/docs/api/assets/basic.css b/docs/api/assets/basic.css
index 24a49f09..bf18350b 100644
--- a/docs/api/assets/basic.css
+++ b/docs/api/assets/basic.css
@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -130,7 +130,7 @@ ul.search li a {
     font-weight: bold;
 }
 
-ul.search li div.context {
+ul.search li p.context {
     color: #888;
     margin: 2px 0 0 30px;
     text-align: left;
@@ -277,25 +277,25 @@ p.rubric {
     font-weight: bold;
 }
 
-img.align-left, .figure.align-left, object.align-left {
+img.align-left, figure.align-left, .figure.align-left, object.align-left {
     clear: left;
     float: left;
     margin-right: 1em;
 }
 
-img.align-right, .figure.align-right, object.align-right {
+img.align-right, figure.align-right, .figure.align-right, object.align-right {
     clear: right;
     float: right;
     margin-left: 1em;
 }
 
-img.align-center, .figure.align-center, object.align-center {
+img.align-center, figure.align-center, .figure.align-center, object.align-center {
   display: block;
   margin-left: auto;
   margin-right: auto;
 }
 
-img.align-default, .figure.align-default {
+img.align-default, figure.align-default, .figure.align-default {
   display: block;
   margin-left: auto;
   margin-right: auto;
@@ -319,7 +319,8 @@ img.align-default, .figure.align-default {
 
 /* -- sidebars -------------------------------------------------------------- */
 
-div.sidebar {
+div.sidebar,
+aside.sidebar {
     margin: 0 0 0.5em 1em;
     border: 1px solid #ddb;
     padding: 7px;
@@ -377,12 +378,14 @@ div.body p.centered {
 /* -- content of sidebars/topics/admonitions -------------------------------- */
 
 div.sidebar > :last-child,
+aside.sidebar > :last-child,
 div.topic > :last-child,
 div.admonition > :last-child {
     margin-bottom: 0;
 }
 
 div.sidebar::after,
+aside.sidebar::after,
 div.topic::after,
 div.admonition::after,
 blockquote::after {
@@ -455,20 +458,22 @@ td > :last-child {
 
 /* -- figures --------------------------------------------------------------- */
 
-div.figure {
+div.figure, figure {
     margin: 0.5em;
     padding: 0.5em;
 }
 
-div.figure p.caption {
+div.figure p.caption, figcaption {
     padding: 0.3em;
 }
 
-div.figure p.caption span.caption-number {
+div.figure p.caption span.caption-number,
+figcaption span.caption-number {
     font-style: italic;
 }
 
-div.figure p.caption span.caption-text {
+div.figure p.caption span.caption-text,
+figcaption span.caption-text {
 }
 
 /* -- field list styles ----------------------------------------------------- */
@@ -503,6 +508,63 @@ table.hlist td {
     vertical-align: top;
 }
 
+/* -- object description styles --------------------------------------------- */
+
+.sig {
+	font-family: 'Consolas', 'Menlo', 'DejaVu Sans Mono', 'Bitstream Vera Sans Mono', monospace;
+}
+
+.sig-name, code.descname {
+    background-color: transparent;
+    font-weight: bold;
+}
+
+.sig-name {
+	font-size: 1.1em;
+}
+
+code.descname {
+    font-size: 1.2em;
+}
+
+.sig-prename, code.descclassname {
+    background-color: transparent;
+}
+
+.optional {
+    font-size: 1.3em;
+}
+
+.sig-paren {
+    font-size: larger;
+}
+
+.sig-param.n {
+	font-style: italic;
+}
+
+/* C++ specific styling */
+
+.sig-inline.c-texpr,
+.sig-inline.cpp-texpr {
+	font-family: unset;
+}
+
+.sig.c   .k, .sig.c   .kt,
+.sig.cpp .k, .sig.cpp .kt {
+	color: #0033B3;
+}
+
+.sig.c   .m,
+.sig.cpp .m {
+	color: #1750EB;
+}
+
+.sig.c   .s, .sig.c   .sc,
+.sig.cpp .s, .sig.cpp .sc {
+	color: #067D17;
+}
+
 
 /* -- other body styles ----------------------------------------------------- */
 
@@ -629,14 +691,6 @@ dl.glossary dt {
     font-size: 1.1em;
 }
 
-.optional {
-    font-size: 1.3em;
-}
-
-.sig-paren {
-    font-size: larger;
-}
-
 .versionmodified {
     font-style: italic;
 }
@@ -677,8 +731,9 @@ dl.glossary dt {
 
 .classifier:before {
     font-style: normal;
-    margin: 0.5em;
+    margin: 0 0.5em;
     content: ":";
+    display: inline-block;
 }
 
 abbr, acronym {
@@ -702,6 +757,7 @@ span.pre {
     -ms-hyphens: none;
     -webkit-hyphens: none;
     hyphens: none;
+    white-space: nowrap;
 }
 
 div[class*="highlight-"] {
@@ -765,8 +821,12 @@ div.code-block-caption code {
 
 table.highlighttable td.linenos,
 span.linenos,
-div.doctest > div.highlight span.gp {  /* gp: Generic.Prompt */
-    user-select: none;
+div.highlight span.gp {  /* gp: Generic.Prompt */
+  user-select: none;
+  -webkit-user-select: text; /* Safari fallback only */
+  -webkit-user-select: none; /* Chrome/Safari */
+  -moz-user-select: none; /* Firefox */
+  -ms-user-select: none; /* IE10+ */
 }
 
 div.code-block-caption span.caption-number {
@@ -781,16 +841,6 @@ div.literal-block-wrapper {
     margin: 1em 0;
 }
 
-code.descname {
-    background-color: transparent;
-    font-weight: bold;
-    font-size: 1.2em;
-}
-
-code.descclassname {
-    background-color: transparent;
-}
-
 code.xref, a code {
     background-color: transparent;
     font-weight: bold;
diff --git a/docs/api/assets/css/theme.css b/docs/api/assets/css/theme.css
index 8cd4f101..0d9ae7e1 100644
--- a/docs/api/assets/css/theme.css
+++ b/docs/api/assets/css/theme.css
@@ -1,4 +1,4 @@
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#7fbbe3;background:#e7f2fa;font-size:80%;font-weight:700;border-radius:4px;padding:2.4px 6px;margin:auto 2px}.rst-content .versionmodified{font-style:italic}@media screen and (max-width:480px){.rst-content .sidebar{width:100%}}span[id*=MathJax-Span]{color:#404040}.math{text-align:center}@font-face{font-family:Lato;src:url(fonts/lato-normal.woff2?bd03a2cc277bbbc338d464e679fe9942) format("woff2"),url(fonts/lato-normal.woff?27bd77b9162d388cb8d4c4217c7c5e2a) format("woff");font-weight:400;font-style:normal;font-display:block}@font-face{font-family:Lato;src:url(fonts/lato-bold.woff2?cccb897485813c7c256901dbca54ecf2) format("woff2"),url(fonts/lato-bold.woff?d878b6c29b10beca227e9eef4246111b) format("woff");font-weight:700;font-style:normal;font-display:block}@font-face{font-family:Lato;src:url(fonts/lato-bold-italic.woff2?0b6bb6725576b072c5d0b02ecdd1900d) format("woff2"),url(fonts/lato-bold-italic.woff?9c7e4e9eb485b4a121c760e61bc3707c) format("woff");font-weight:700;font-style:italic;font-display:block}@font-face{font-family:Lato;src:url(fonts/lato-normal-italic.woff2?4eb103b4d12be57cb1d040ed5e162e9d) format("woff2"),url(fonts/lato-normal-italic.woff?f28f2d6482446544ef1ea1ccc6dd5892) format("woff");font-weight:400;font-style:italic;font-display:block}@font-face{font-family:Roboto Slab;font-style:normal;font-weight:400;src:url(fonts/Roboto-Slab-Regular.woff2?7abf5b8d04d26a2cafea937019bca958) format("woff2"),url(fonts/Roboto-Slab-Regular.woff?c1be9284088d487c5e3ff0a10a92e58c) format("woff");font-display:block}@font-face{font-family:Roboto Slab;font-style:normal;font-weight:700;src:url(fonts/Roboto-Slab-Bold.woff2?9984f4a9bda09be08e83f2506954adbe) format("woff2"),url(fonts/Roboto-Slab-Bold.woff?bed5564a116b05148e3b3bea6fb1162a) format("woff");font-display:block}
\ No newline at end of file
diff --git a/docs/api/assets/doctools.js b/docs/api/assets/doctools.js
index 7d88f807..e1bfd708 100644
--- a/docs/api/assets/doctools.js
+++ b/docs/api/assets/doctools.js
@@ -4,7 +4,7 @@
  *
  * Sphinx JavaScript utilities for all documentation.
  *
- * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -29,9 +29,14 @@ if (!window.console || !console.firebug) {
 
 /**
  * small helper function to urldecode strings
+ *
+ * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL
  */
 jQuery.urldecode = function(x) {
-  return decodeURIComponent(x).replace(/\+/g, ' ');
+  if (!x) {
+    return x
+  }
+  return decodeURIComponent(x.replace(/\+/g, ' '));
 };
 
 /**
@@ -149,9 +154,7 @@ var Documentation = {
     this.fixFirefoxAnchorBug();
     this.highlightSearchWords();
     this.initIndexTable();
-    if (DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) {
-      this.initOnKeyListeners();
-    }
+    this.initOnKeyListeners();
   },
 
   /**
@@ -259,6 +262,16 @@ var Documentation = {
   hideSearchWords : function() {
     $('#searchbox .highlight-link').fadeOut(300);
     $('span.highlighted').removeClass('highlighted');
+    var url = new URL(window.location);
+    url.searchParams.delete('highlight');
+    window.history.replaceState({}, '', url);
+  },
+
+   /**
+   * helper function to focus on search bar
+   */
+  focusSearchBar : function() {
+    $('input[name=q]').first().focus();
   },
 
   /**
@@ -283,25 +296,54 @@ var Documentation = {
   },
 
   initOnKeyListeners: function() {
+    // only install a listener if it is really needed
+    if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS &&
+        !DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS)
+        return;
+
     $(document).keydown(function(event) {
       var activeElementType = document.activeElement.tagName;
       // don't navigate when in search box, textarea, dropdown or button
       if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT'
-          && activeElementType !== 'BUTTON' && !event.altKey && !event.ctrlKey && !event.metaKey
-          && !event.shiftKey) {
-        switch (event.keyCode) {
-          case 37: // left
-            var prevHref = $('link[rel="prev"]').prop('href');
-            if (prevHref) {
-              window.location.href = prevHref;
-              return false;
-            }
-          case 39: // right
-            var nextHref = $('link[rel="next"]').prop('href');
-            if (nextHref) {
-              window.location.href = nextHref;
-              return false;
-            }
+          && activeElementType !== 'BUTTON') {
+        if (event.altKey || event.ctrlKey || event.metaKey)
+          return;
+
+          if (!event.shiftKey) {
+            switch (event.key) {
+              case 'ArrowLeft':
+                if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS)
+                  break;
+                var prevHref = $('link[rel="prev"]').prop('href');
+                if (prevHref) {
+                  window.location.href = prevHref;
+                  return false;
+                }
+                break;
+              case 'ArrowRight':
+                if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS)
+                  break;
+                var nextHref = $('link[rel="next"]').prop('href');
+                if (nextHref) {
+                  window.location.href = nextHref;
+                  return false;
+                }
+                break;
+              case 'Escape':
+                if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS)
+                  break;
+                Documentation.hideSearchWords();
+                return false;
+          }
+        }
+
+        // some keyboard layouts may need Shift to get /
+        switch (event.key) {
+          case '/':
+            if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS)
+              break;
+            Documentation.focusSearchBar();
+            return false;
         }
       }
     });
diff --git a/docs/api/assets/documentation_options.js b/docs/api/assets/documentation_options.js
index deb6527a..727d87a6 100644
--- a/docs/api/assets/documentation_options.js
+++ b/docs/api/assets/documentation_options.js
@@ -8,5 +8,7 @@ var DOCUMENTATION_OPTIONS = {
     LINK_SUFFIX: '.html',
     HAS_SOURCE: true,
     SOURCELINK_SUFFIX: '.txt',
-    NAVIGATION_WITH_KEYS: false
+    NAVIGATION_WITH_KEYS: false,
+    SHOW_SEARCH_SUMMARY: true,
+    ENABLE_SEARCH_SHORTCUTS: true,
 };
\ No newline at end of file
diff --git a/docs/api/assets/fonts/FontAwesome.otf b/docs/api/assets/fonts/FontAwesome.otf
deleted file mode 100644
index 401ec0f3..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-bold.eot b/docs/api/assets/fonts/Lato/lato-bold.eot
deleted file mode 100644
index 3361183a..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-bold.ttf b/docs/api/assets/fonts/Lato/lato-bold.ttf
deleted file mode 100644
index 29f691d5..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-bold.woff b/docs/api/assets/fonts/Lato/lato-bold.woff
deleted file mode 100644
index c6dff51f..00000000
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deleted file mode 100644
index bb195043..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-bolditalic.eot b/docs/api/assets/fonts/Lato/lato-bolditalic.eot
deleted file mode 100644
index 3d415493..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-bolditalic.ttf b/docs/api/assets/fonts/Lato/lato-bolditalic.ttf
deleted file mode 100644
index f402040b..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-bolditalic.woff b/docs/api/assets/fonts/Lato/lato-bolditalic.woff
deleted file mode 100644
index 88ad05b9..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-bolditalic.woff2 b/docs/api/assets/fonts/Lato/lato-bolditalic.woff2
deleted file mode 100644
index c4e3d804..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-italic.eot b/docs/api/assets/fonts/Lato/lato-italic.eot
deleted file mode 100644
index 3f826421..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-italic.ttf b/docs/api/assets/fonts/Lato/lato-italic.ttf
deleted file mode 100644
index b4bfc9b2..00000000
Binary files a/docs/api/assets/fonts/Lato/lato-italic.ttf and /dev/null differ
diff --git a/docs/api/assets/fonts/Lato/lato-italic.woff b/docs/api/assets/fonts/Lato/lato-italic.woff
deleted file mode 100644
index 76114bc0..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-italic.woff2 b/docs/api/assets/fonts/Lato/lato-italic.woff2
deleted file mode 100644
index 3404f37e..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-regular.eot b/docs/api/assets/fonts/Lato/lato-regular.eot
deleted file mode 100644
index 11e3f2a5..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-regular.ttf b/docs/api/assets/fonts/Lato/lato-regular.ttf
deleted file mode 100644
index 74decd9e..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-regular.woff b/docs/api/assets/fonts/Lato/lato-regular.woff
deleted file mode 100644
index ae1307ff..00000000
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diff --git a/docs/api/assets/fonts/Lato/lato-regular.woff2 b/docs/api/assets/fonts/Lato/lato-regular.woff2
deleted file mode 100644
index 3bf98433..00000000
Binary files a/docs/api/assets/fonts/Lato/lato-regular.woff2 and /dev/null differ
diff --git a/docs/api/assets/fonts/Roboto-Slab-Bold.woff b/docs/api/assets/fonts/Roboto-Slab-Bold.woff
deleted file mode 100644
index 6cb60000..00000000
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diff --git a/docs/api/assets/fonts/Roboto-Slab-Bold.woff2 b/docs/api/assets/fonts/Roboto-Slab-Bold.woff2
deleted file mode 100644
index 7059e231..00000000
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diff --git a/docs/api/assets/fonts/Roboto-Slab-Light.woff b/docs/api/assets/fonts/Roboto-Slab-Light.woff
deleted file mode 100644
index 337d2871..00000000
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diff --git a/docs/api/assets/fonts/Roboto-Slab-Light.woff2 b/docs/api/assets/fonts/Roboto-Slab-Light.woff2
deleted file mode 100644
index 20398aff..00000000
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diff --git a/docs/api/assets/fonts/Roboto-Slab-Regular.woff b/docs/api/assets/fonts/Roboto-Slab-Regular.woff
deleted file mode 100644
index f815f63f..00000000
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diff --git a/docs/api/assets/fonts/Roboto-Slab-Regular.woff2 b/docs/api/assets/fonts/Roboto-Slab-Regular.woff2
deleted file mode 100644
index f2c76e5b..00000000
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diff --git a/docs/api/assets/fonts/Roboto-Slab-Thin.woff b/docs/api/assets/fonts/Roboto-Slab-Thin.woff
deleted file mode 100644
index 6b30ea63..00000000
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diff --git a/docs/api/assets/fonts/Roboto-Slab-Thin.woff2 b/docs/api/assets/fonts/Roboto-Slab-Thin.woff2
deleted file mode 100644
index 328f5bb0..00000000
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diff --git a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.eot b/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.eot
deleted file mode 100644
index 79dc8efe..00000000
Binary files a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.eot and /dev/null differ
diff --git a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.ttf b/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.ttf
deleted file mode 100644
index df5d1df2..00000000
Binary files a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.ttf and /dev/null differ
diff --git a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.woff b/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.woff
deleted file mode 100644
index 6cb60000..00000000
Binary files a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.woff and /dev/null differ
diff --git a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 b/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.woff2
deleted file mode 100644
index 7059e231..00000000
Binary files a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 and /dev/null differ
diff --git a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.eot b/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.eot
deleted file mode 100644
index 2f7ca78a..00000000
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diff --git a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.ttf b/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.ttf
deleted file mode 100644
index eb52a790..00000000
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diff --git a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.woff b/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.woff
deleted file mode 100644
index f815f63f..00000000
Binary files a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.woff and /dev/null differ
diff --git a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 b/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.woff2
deleted file mode 100644
index f2c76e5b..00000000
Binary files a/docs/api/assets/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 and /dev/null differ
diff --git a/docs/api/assets/fonts/fontawesome-webfont.eot b/docs/api/assets/fonts/fontawesome-webfont.eot
deleted file mode 100644
index e9f60ca9..00000000
Binary files a/docs/api/assets/fonts/fontawesome-webfont.eot and /dev/null differ
diff --git a/docs/api/assets/fonts/fontawesome-webfont.svg b/docs/api/assets/fonts/fontawesome-webfont.svg
deleted file mode 100644
index 855c845e..00000000
--- a/docs/api/assets/fonts/fontawesome-webfont.svg
+++ /dev/null
@@ -1,2671 +0,0 @@
-<?xml version="1.0" standalone="no"?>
-<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd" >
-<svg>
-<metadata>
-Created by FontForge 20120731 at Mon Oct 24 17:37:40 2016
- By ,,,
-Copyright Dave Gandy 2016. All rights reserved.
-</metadata>
-<defs>
-<font id="FontAwesome" horiz-adv-x="1536" >
-  <font-face 
-    font-family="FontAwesome"
-    font-weight="400"
-    font-stretch="normal"
-    units-per-em="1792"
-    panose-1="0 0 0 0 0 0 0 0 0 0"
-    ascent="1536"
-    descent="-256"
-    bbox="-1.02083 -256.962 2304.6 1537.02"
-    underline-thickness="0"
-    underline-position="0"
-    unicode-range="U+0020-F500"
-  />
-<missing-glyph horiz-adv-x="896" 
-d="M224 112h448v1312h-448v-1312zM112 0v1536h672v-1536h-672z" />
-    <glyph glyph-name=".notdef" horiz-adv-x="896" 
-d="M224 112h448v1312h-448v-1312zM112 0v1536h672v-1536h-672z" />
-    <glyph glyph-name=".null" horiz-adv-x="0" 
- />
-    <glyph glyph-name="nonmarkingreturn" horiz-adv-x="597" 
- />
-    <glyph glyph-name="space" unicode=" " horiz-adv-x="448" 
- />
-    <glyph glyph-name="dieresis" unicode="&#xa8;" horiz-adv-x="1792" 
- />
-    <glyph glyph-name="copyright" unicode="&#xa9;" horiz-adv-x="1792" 
- />
-    <glyph glyph-name="registered" unicode="&#xae;" horiz-adv-x="1792" 
- />
-    <glyph glyph-name="acute" unicode="&#xb4;" horiz-adv-x="1792" 
- />
-    <glyph glyph-name="AE" unicode="&#xc6;" horiz-adv-x="1792" 
- />
-    <glyph glyph-name="Oslash" unicode="&#xd8;" horiz-adv-x="1792" 
- />
-    <glyph glyph-name="trademark" unicode="&#x2122;" horiz-adv-x="1792" 
- />
-    <glyph glyph-name="infinity" unicode="&#x221e;" horiz-adv-x="1792" 
- />
-    <glyph glyph-name="notequal" unicode="&#x2260;" horiz-adv-x="1792" 
- />
-    <glyph glyph-name="glass" unicode="&#xf000;" horiz-adv-x="1792" 
-d="M1699 1350q0 -35 -43 -78l-632 -632v-768h320q26 0 45 -19t19 -45t-19 -45t-45 -19h-896q-26 0 -45 19t-19 45t19 45t45 19h320v768l-632 632q-43 43 -43 78q0 23 18 36.5t38 17.5t43 4h1408q23 0 43 -4t38 -17.5t18 -36.5z" />
-    <glyph glyph-name="music" unicode="&#xf001;" 
-d="M1536 1312v-1120q0 -50 -34 -89t-86 -60.5t-103.5 -32t-96.5 -10.5t-96.5 10.5t-103.5 32t-86 60.5t-34 89t34 89t86 60.5t103.5 32t96.5 10.5q105 0 192 -39v537l-768 -237v-709q0 -50 -34 -89t-86 -60.5t-103.5 -32t-96.5 -10.5t-96.5 10.5t-103.5 32t-86 60.5t-34 89
-t34 89t86 60.5t103.5 32t96.5 10.5q105 0 192 -39v967q0 31 19 56.5t49 35.5l832 256q12 4 28 4q40 0 68 -28t28 -68z" />
-    <glyph glyph-name="search" unicode="&#xf002;" horiz-adv-x="1664" 
-d="M1152 704q0 185 -131.5 316.5t-316.5 131.5t-316.5 -131.5t-131.5 -316.5t131.5 -316.5t316.5 -131.5t316.5 131.5t131.5 316.5zM1664 -128q0 -52 -38 -90t-90 -38q-54 0 -90 38l-343 342q-179 -124 -399 -124q-143 0 -273.5 55.5t-225 150t-150 225t-55.5 273.5
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diff --git a/docs/api/assets/js/theme.js b/docs/api/assets/js/theme.js
index 839d07e2..1fddb6ee 100644
--- a/docs/api/assets/js/theme.js
+++ b/docs/api/assets/js/theme.js
@@ -1 +1 @@
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diff --git a/docs/api/assets/language_data.js b/docs/api/assets/language_data.js
index d2b4ee91..ebe2f03b 100644
--- a/docs/api/assets/language_data.js
+++ b/docs/api/assets/language_data.js
@@ -5,7 +5,7 @@
  * This script contains the language-specific data used by searchtools.js,
  * namely the list of stopwords, stemmer, scorer and splitter.
  *
- * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -13,7 +13,8 @@
 var stopwords = ["a","and","are","as","at","be","but","by","for","if","in","into","is","it","near","no","not","of","on","or","such","that","the","their","then","there","these","they","this","to","was","will","with"];
 
 
-/* Non-minified version JS is _stemmer.js if file is provided */ 
+/* Non-minified version is copied as a separate JS file, is available */
+
 /**
  * Porter Stemmer
  */
@@ -199,7 +200,6 @@ var Stemmer = function() {
 
 
 
-
 var splitChars = (function() {
     var result = {};
     var singles = [96, 180, 187, 191, 215, 247, 749, 885, 903, 907, 909, 930, 1014, 1648,
diff --git a/docs/api/assets/pygments.css b/docs/api/assets/pygments.css
index d14395ef..691aeb82 100644
--- a/docs/api/assets/pygments.css
+++ b/docs/api/assets/pygments.css
@@ -1,8 +1,8 @@
-pre { line-height: 125%; margin: 0; }
-td.linenos pre { color: #000000; background-color: #f0f0f0; padding: 0 5px 0 5px; }
-span.linenos { color: #000000; background-color: #f0f0f0; padding: 0 5px 0 5px; }
-td.linenos pre.special { color: #000000; background-color: #ffffc0; padding: 0 5px 0 5px; }
-span.linenos.special { color: #000000; background-color: #ffffc0; padding: 0 5px 0 5px; }
+pre { line-height: 125%; }
+td.linenos .normal { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }
+span.linenos { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }
+td.linenos .special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
+span.linenos.special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
 .highlight .hll { background-color: #ffffcc }
 .highlight { background: #eeffcc; }
 .highlight .c { color: #408090; font-style: italic } /* Comment */
diff --git a/docs/api/assets/searchtools.js b/docs/api/assets/searchtools.js
index 261ecaa9..0a44e858 100644
--- a/docs/api/assets/searchtools.js
+++ b/docs/api/assets/searchtools.js
@@ -4,7 +4,7 @@
  *
  * Sphinx JavaScript utilities for the full-text search.
  *
- * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -172,10 +172,6 @@ var Search = {
       }
       // stem the word
       var word = stemmer.stemWord(tmp[i].toLowerCase());
-      // prevent stemmer from cutting word smaller than two chars
-      if(word.length < 3 && tmp[i].length >= 3) {
-        word = tmp[i];
-      }
       var toAppend;
       // select the correct list
       if (word[0] == '-') {
@@ -248,7 +244,7 @@ var Search = {
       // results left, load the summary and display it
       if (results.length) {
         var item = results.pop();
-        var listItem = $('<li style="display:none"></li>');
+        var listItem = $('<li></li>');
         var requestUrl = "";
         var linkUrl = "";
         if (DOCUMENTATION_OPTIONS.BUILDER === 'dirhtml') {
@@ -273,28 +269,31 @@ var Search = {
         if (item[3]) {
           listItem.append($('<span> (' + item[3] + ')</span>'));
           Search.output.append(listItem);
-          listItem.slideDown(5, function() {
+          setTimeout(function() {
             displayNextItem();
-          });
-        } else if (DOCUMENTATION_OPTIONS.HAS_SOURCE) {
+          }, 5);
+        } else if (DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY) {
           $.ajax({url: requestUrl,
                   dataType: "text",
                   complete: function(jqxhr, textstatus) {
                     var data = jqxhr.responseText;
                     if (data !== '' && data !== undefined) {
-                      listItem.append(Search.makeSearchSummary(data, searchterms, hlterms));
+                      var summary = Search.makeSearchSummary(data, searchterms, hlterms);
+                      if (summary) {
+                        listItem.append(summary);
+                      }
                     }
                     Search.output.append(listItem);
-                    listItem.slideDown(5, function() {
+                    setTimeout(function() {
                       displayNextItem();
-                    });
+                    }, 5);
                   }});
         } else {
-          // no source available, just display title
+          // just display title
           Search.output.append(listItem);
-          listItem.slideDown(5, function() {
+          setTimeout(function() {
             displayNextItem();
-          });
+          }, 5);
         }
       }
       // search finished, update title and status message
@@ -325,7 +324,9 @@ var Search = {
     var results = [];
 
     for (var prefix in objects) {
-      for (var name in objects[prefix]) {
+      for (var iMatch = 0; iMatch != objects[prefix].length; ++iMatch) {
+        var match = objects[prefix][iMatch];
+        var name = match[4];
         var fullname = (prefix ? prefix + '.' : '') + name;
         var fullnameLower = fullname.toLowerCase()
         if (fullnameLower.indexOf(object) > -1) {
@@ -339,7 +340,6 @@ var Search = {
           } else if (parts[parts.length - 1].indexOf(object) > -1) {
             score += Scorer.objPartialMatch;
           }
-          var match = objects[prefix][name];
           var objname = objnames[match[1]][2];
           var title = titles[match[0]];
           // If more than one term searched for, we require other words to be
@@ -379,6 +379,13 @@ var Search = {
     return results;
   },
 
+  /**
+   * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions
+   */
+  escapeRegExp : function(string) {
+    return string.replace(/[.*+\-?^${}()|[\]\\]/g, '\\$&'); // $& means the whole matched string
+  },
+
   /**
    * search for full-text terms in the index
    */
@@ -402,13 +409,14 @@ var Search = {
       ];
       // add support for partial matches
       if (word.length > 2) {
+        var word_regex = this.escapeRegExp(word);
         for (var w in terms) {
-          if (w.match(word) && !terms[word]) {
+          if (w.match(word_regex) && !terms[word]) {
             _o.push({files: terms[w], score: Scorer.partialTerm})
           }
         }
         for (var w in titleterms) {
-          if (w.match(word) && !titleterms[word]) {
+          if (w.match(word_regex) && !titleterms[word]) {
               _o.push({files: titleterms[w], score: Scorer.partialTitle})
           }
         }
@@ -490,6 +498,9 @@ var Search = {
    */
   makeSearchSummary : function(htmlText, keywords, hlwords) {
     var text = Search.htmlToText(htmlText);
+    if (text == "") {
+      return null;
+    }
     var textLower = text.toLowerCase();
     var start = 0;
     $.each(keywords, function() {
@@ -501,7 +512,7 @@ var Search = {
     var excerpt = ((start > 0) ? '...' : '') +
       $.trim(text.substr(start, 240)) +
       ((start + 240 - text.length) ? '...' : '');
-    var rv = $('<div class="context"></div>').text(excerpt);
+    var rv = $('<p class="context"></p>').text(excerpt);
     $.each(hlwords, function() {
       rv = rv.highlightText(this, 'highlighted');
     });
diff --git a/docs/api/assets/underscore-1.13.1.js b/docs/api/assets/underscore-1.13.1.js
new file mode 100644
index 00000000..ffd77af9
--- /dev/null
+++ b/docs/api/assets/underscore-1.13.1.js
@@ -0,0 +1,2042 @@
+(function (global, factory) {
+  typeof exports === 'object' && typeof module !== 'undefined' ? module.exports = factory() :
+  typeof define === 'function' && define.amd ? define('underscore', factory) :
+  (global = typeof globalThis !== 'undefined' ? globalThis : global || self, (function () {
+    var current = global._;
+    var exports = global._ = factory();
+    exports.noConflict = function () { global._ = current; return exports; };
+  }()));
+}(this, (function () {
+  //     Underscore.js 1.13.1
+  //     https://underscorejs.org
+  //     (c) 2009-2021 Jeremy Ashkenas, Julian Gonggrijp, and DocumentCloud and Investigative Reporters & Editors
+  //     Underscore may be freely distributed under the MIT license.
+
+  // Current version.
+  var VERSION = '1.13.1';
+
+  // Establish the root object, `window` (`self`) in the browser, `global`
+  // on the server, or `this` in some virtual machines. We use `self`
+  // instead of `window` for `WebWorker` support.
+  var root = typeof self == 'object' && self.self === self && self ||
+            typeof global == 'object' && global.global === global && global ||
+            Function('return this')() ||
+            {};
+
+  // Save bytes in the minified (but not gzipped) version:
+  var ArrayProto = Array.prototype, ObjProto = Object.prototype;
+  var SymbolProto = typeof Symbol !== 'undefined' ? Symbol.prototype : null;
+
+  // Create quick reference variables for speed access to core prototypes.
+  var push = ArrayProto.push,
+      slice = ArrayProto.slice,
+      toString = ObjProto.toString,
+      hasOwnProperty = ObjProto.hasOwnProperty;
+
+  // Modern feature detection.
+  var supportsArrayBuffer = typeof ArrayBuffer !== 'undefined',
+      supportsDataView = typeof DataView !== 'undefined';
+
+  // All **ECMAScript 5+** native function implementations that we hope to use
+  // are declared here.
+  var nativeIsArray = Array.isArray,
+      nativeKeys = Object.keys,
+      nativeCreate = Object.create,
+      nativeIsView = supportsArrayBuffer && ArrayBuffer.isView;
+
+  // Create references to these builtin functions because we override them.
+  var _isNaN = isNaN,
+      _isFinite = isFinite;
+
+  // Keys in IE < 9 that won't be iterated by `for key in ...` and thus missed.
+  var hasEnumBug = !{toString: null}.propertyIsEnumerable('toString');
+  var nonEnumerableProps = ['valueOf', 'isPrototypeOf', 'toString',
+    'propertyIsEnumerable', 'hasOwnProperty', 'toLocaleString'];
+
+  // The largest integer that can be represented exactly.
+  var MAX_ARRAY_INDEX = Math.pow(2, 53) - 1;
+
+  // Some functions take a variable number of arguments, or a few expected
+  // arguments at the beginning and then a variable number of values to operate
+  // on. This helper accumulates all remaining arguments past the function’s
+  // argument length (or an explicit `startIndex`), into an array that becomes
+  // the last argument. Similar to ES6’s "rest parameter".
+  function restArguments(func, startIndex) {
+    startIndex = startIndex == null ? func.length - 1 : +startIndex;
+    return function() {
+      var length = Math.max(arguments.length - startIndex, 0),
+          rest = Array(length),
+          index = 0;
+      for (; index < length; index++) {
+        rest[index] = arguments[index + startIndex];
+      }
+      switch (startIndex) {
+        case 0: return func.call(this, rest);
+        case 1: return func.call(this, arguments[0], rest);
+        case 2: return func.call(this, arguments[0], arguments[1], rest);
+      }
+      var args = Array(startIndex + 1);
+      for (index = 0; index < startIndex; index++) {
+        args[index] = arguments[index];
+      }
+      args[startIndex] = rest;
+      return func.apply(this, args);
+    };
+  }
+
+  // Is a given variable an object?
+  function isObject(obj) {
+    var type = typeof obj;
+    return type === 'function' || type === 'object' && !!obj;
+  }
+
+  // Is a given value equal to null?
+  function isNull(obj) {
+    return obj === null;
+  }
+
+  // Is a given variable undefined?
+  function isUndefined(obj) {
+    return obj === void 0;
+  }
+
+  // Is a given value a boolean?
+  function isBoolean(obj) {
+    return obj === true || obj === false || toString.call(obj) === '[object Boolean]';
+  }
+
+  // Is a given value a DOM element?
+  function isElement(obj) {
+    return !!(obj && obj.nodeType === 1);
+  }
+
+  // Internal function for creating a `toString`-based type tester.
+  function tagTester(name) {
+    var tag = '[object ' + name + ']';
+    return function(obj) {
+      return toString.call(obj) === tag;
+    };
+  }
+
+  var isString = tagTester('String');
+
+  var isNumber = tagTester('Number');
+
+  var isDate = tagTester('Date');
+
+  var isRegExp = tagTester('RegExp');
+
+  var isError = tagTester('Error');
+
+  var isSymbol = tagTester('Symbol');
+
+  var isArrayBuffer = tagTester('ArrayBuffer');
+
+  var isFunction = tagTester('Function');
+
+  // Optimize `isFunction` if appropriate. Work around some `typeof` bugs in old
+  // v8, IE 11 (#1621), Safari 8 (#1929), and PhantomJS (#2236).
+  var nodelist = root.document && root.document.childNodes;
+  if (typeof /./ != 'function' && typeof Int8Array != 'object' && typeof nodelist != 'function') {
+    isFunction = function(obj) {
+      return typeof obj == 'function' || false;
+    };
+  }
+
+  var isFunction$1 = isFunction;
+
+  var hasObjectTag = tagTester('Object');
+
+  // In IE 10 - Edge 13, `DataView` has string tag `'[object Object]'`.
+  // In IE 11, the most common among them, this problem also applies to
+  // `Map`, `WeakMap` and `Set`.
+  var hasStringTagBug = (
+        supportsDataView && hasObjectTag(new DataView(new ArrayBuffer(8)))
+      ),
+      isIE11 = (typeof Map !== 'undefined' && hasObjectTag(new Map));
+
+  var isDataView = tagTester('DataView');
+
+  // In IE 10 - Edge 13, we need a different heuristic
+  // to determine whether an object is a `DataView`.
+  function ie10IsDataView(obj) {
+    return obj != null && isFunction$1(obj.getInt8) && isArrayBuffer(obj.buffer);
+  }
+
+  var isDataView$1 = (hasStringTagBug ? ie10IsDataView : isDataView);
+
+  // Is a given value an array?
+  // Delegates to ECMA5's native `Array.isArray`.
+  var isArray = nativeIsArray || tagTester('Array');
+
+  // Internal function to check whether `key` is an own property name of `obj`.
+  function has$1(obj, key) {
+    return obj != null && hasOwnProperty.call(obj, key);
+  }
+
+  var isArguments = tagTester('Arguments');
+
+  // Define a fallback version of the method in browsers (ahem, IE < 9), where
+  // there isn't any inspectable "Arguments" type.
+  (function() {
+    if (!isArguments(arguments)) {
+      isArguments = function(obj) {
+        return has$1(obj, 'callee');
+      };
+    }
+  }());
+
+  var isArguments$1 = isArguments;
+
+  // Is a given object a finite number?
+  function isFinite$1(obj) {
+    return !isSymbol(obj) && _isFinite(obj) && !isNaN(parseFloat(obj));
+  }
+
+  // Is the given value `NaN`?
+  function isNaN$1(obj) {
+    return isNumber(obj) && _isNaN(obj);
+  }
+
+  // Predicate-generating function. Often useful outside of Underscore.
+  function constant(value) {
+    return function() {
+      return value;
+    };
+  }
+
+  // Common internal logic for `isArrayLike` and `isBufferLike`.
+  function createSizePropertyCheck(getSizeProperty) {
+    return function(collection) {
+      var sizeProperty = getSizeProperty(collection);
+      return typeof sizeProperty == 'number' && sizeProperty >= 0 && sizeProperty <= MAX_ARRAY_INDEX;
+    }
+  }
+
+  // Internal helper to generate a function to obtain property `key` from `obj`.
+  function shallowProperty(key) {
+    return function(obj) {
+      return obj == null ? void 0 : obj[key];
+    };
+  }
+
+  // Internal helper to obtain the `byteLength` property of an object.
+  var getByteLength = shallowProperty('byteLength');
+
+  // Internal helper to determine whether we should spend extensive checks against
+  // `ArrayBuffer` et al.
+  var isBufferLike = createSizePropertyCheck(getByteLength);
+
+  // Is a given value a typed array?
+  var typedArrayPattern = /\[object ((I|Ui)nt(8|16|32)|Float(32|64)|Uint8Clamped|Big(I|Ui)nt64)Array\]/;
+  function isTypedArray(obj) {
+    // `ArrayBuffer.isView` is the most future-proof, so use it when available.
+    // Otherwise, fall back on the above regular expression.
+    return nativeIsView ? (nativeIsView(obj) && !isDataView$1(obj)) :
+                  isBufferLike(obj) && typedArrayPattern.test(toString.call(obj));
+  }
+
+  var isTypedArray$1 = supportsArrayBuffer ? isTypedArray : constant(false);
+
+  // Internal helper to obtain the `length` property of an object.
+  var getLength = shallowProperty('length');
+
+  // Internal helper to create a simple lookup structure.
+  // `collectNonEnumProps` used to depend on `_.contains`, but this led to
+  // circular imports. `emulatedSet` is a one-off solution that only works for
+  // arrays of strings.
+  function emulatedSet(keys) {
+    var hash = {};
+    for (var l = keys.length, i = 0; i < l; ++i) hash[keys[i]] = true;
+    return {
+      contains: function(key) { return hash[key]; },
+      push: function(key) {
+        hash[key] = true;
+        return keys.push(key);
+      }
+    };
+  }
+
+  // Internal helper. Checks `keys` for the presence of keys in IE < 9 that won't
+  // be iterated by `for key in ...` and thus missed. Extends `keys` in place if
+  // needed.
+  function collectNonEnumProps(obj, keys) {
+    keys = emulatedSet(keys);
+    var nonEnumIdx = nonEnumerableProps.length;
+    var constructor = obj.constructor;
+    var proto = isFunction$1(constructor) && constructor.prototype || ObjProto;
+
+    // Constructor is a special case.
+    var prop = 'constructor';
+    if (has$1(obj, prop) && !keys.contains(prop)) keys.push(prop);
+
+    while (nonEnumIdx--) {
+      prop = nonEnumerableProps[nonEnumIdx];
+      if (prop in obj && obj[prop] !== proto[prop] && !keys.contains(prop)) {
+        keys.push(prop);
+      }
+    }
+  }
+
+  // Retrieve the names of an object's own properties.
+  // Delegates to **ECMAScript 5**'s native `Object.keys`.
+  function keys(obj) {
+    if (!isObject(obj)) return [];
+    if (nativeKeys) return nativeKeys(obj);
+    var keys = [];
+    for (var key in obj) if (has$1(obj, key)) keys.push(key);
+    // Ahem, IE < 9.
+    if (hasEnumBug) collectNonEnumProps(obj, keys);
+    return keys;
+  }
+
+  // Is a given array, string, or object empty?
+  // An "empty" object has no enumerable own-properties.
+  function isEmpty(obj) {
+    if (obj == null) return true;
+    // Skip the more expensive `toString`-based type checks if `obj` has no
+    // `.length`.
+    var length = getLength(obj);
+    if (typeof length == 'number' && (
+      isArray(obj) || isString(obj) || isArguments$1(obj)
+    )) return length === 0;
+    return getLength(keys(obj)) === 0;
+  }
+
+  // Returns whether an object has a given set of `key:value` pairs.
+  function isMatch(object, attrs) {
+    var _keys = keys(attrs), length = _keys.length;
+    if (object == null) return !length;
+    var obj = Object(object);
+    for (var i = 0; i < length; i++) {
+      var key = _keys[i];
+      if (attrs[key] !== obj[key] || !(key in obj)) return false;
+    }
+    return true;
+  }
+
+  // If Underscore is called as a function, it returns a wrapped object that can
+  // be used OO-style. This wrapper holds altered versions of all functions added
+  // through `_.mixin`. Wrapped objects may be chained.
+  function _$1(obj) {
+    if (obj instanceof _$1) return obj;
+    if (!(this instanceof _$1)) return new _$1(obj);
+    this._wrapped = obj;
+  }
+
+  _$1.VERSION = VERSION;
+
+  // Extracts the result from a wrapped and chained object.
+  _$1.prototype.value = function() {
+    return this._wrapped;
+  };
+
+  // Provide unwrapping proxies for some methods used in engine operations
+  // such as arithmetic and JSON stringification.
+  _$1.prototype.valueOf = _$1.prototype.toJSON = _$1.prototype.value;
+
+  _$1.prototype.toString = function() {
+    return String(this._wrapped);
+  };
+
+  // Internal function to wrap or shallow-copy an ArrayBuffer,
+  // typed array or DataView to a new view, reusing the buffer.
+  function toBufferView(bufferSource) {
+    return new Uint8Array(
+      bufferSource.buffer || bufferSource,
+      bufferSource.byteOffset || 0,
+      getByteLength(bufferSource)
+    );
+  }
+
+  // We use this string twice, so give it a name for minification.
+  var tagDataView = '[object DataView]';
+
+  // Internal recursive comparison function for `_.isEqual`.
+  function eq(a, b, aStack, bStack) {
+    // Identical objects are equal. `0 === -0`, but they aren't identical.
+    // See the [Harmony `egal` proposal](https://wiki.ecmascript.org/doku.php?id=harmony:egal).
+    if (a === b) return a !== 0 || 1 / a === 1 / b;
+    // `null` or `undefined` only equal to itself (strict comparison).
+    if (a == null || b == null) return false;
+    // `NaN`s are equivalent, but non-reflexive.
+    if (a !== a) return b !== b;
+    // Exhaust primitive checks
+    var type = typeof a;
+    if (type !== 'function' && type !== 'object' && typeof b != 'object') return false;
+    return deepEq(a, b, aStack, bStack);
+  }
+
+  // Internal recursive comparison function for `_.isEqual`.
+  function deepEq(a, b, aStack, bStack) {
+    // Unwrap any wrapped objects.
+    if (a instanceof _$1) a = a._wrapped;
+    if (b instanceof _$1) b = b._wrapped;
+    // Compare `[[Class]]` names.
+    var className = toString.call(a);
+    if (className !== toString.call(b)) return false;
+    // Work around a bug in IE 10 - Edge 13.
+    if (hasStringTagBug && className == '[object Object]' && isDataView$1(a)) {
+      if (!isDataView$1(b)) return false;
+      className = tagDataView;
+    }
+    switch (className) {
+      // These types are compared by value.
+      case '[object RegExp]':
+        // RegExps are coerced to strings for comparison (Note: '' + /a/i === '/a/i')
+      case '[object String]':
+        // Primitives and their corresponding object wrappers are equivalent; thus, `"5"` is
+        // equivalent to `new String("5")`.
+        return '' + a === '' + b;
+      case '[object Number]':
+        // `NaN`s are equivalent, but non-reflexive.
+        // Object(NaN) is equivalent to NaN.
+        if (+a !== +a) return +b !== +b;
+        // An `egal` comparison is performed for other numeric values.
+        return +a === 0 ? 1 / +a === 1 / b : +a === +b;
+      case '[object Date]':
+      case '[object Boolean]':
+        // Coerce dates and booleans to numeric primitive values. Dates are compared by their
+        // millisecond representations. Note that invalid dates with millisecond representations
+        // of `NaN` are not equivalent.
+        return +a === +b;
+      case '[object Symbol]':
+        return SymbolProto.valueOf.call(a) === SymbolProto.valueOf.call(b);
+      case '[object ArrayBuffer]':
+      case tagDataView:
+        // Coerce to typed array so we can fall through.
+        return deepEq(toBufferView(a), toBufferView(b), aStack, bStack);
+    }
+
+    var areArrays = className === '[object Array]';
+    if (!areArrays && isTypedArray$1(a)) {
+        var byteLength = getByteLength(a);
+        if (byteLength !== getByteLength(b)) return false;
+        if (a.buffer === b.buffer && a.byteOffset === b.byteOffset) return true;
+        areArrays = true;
+    }
+    if (!areArrays) {
+      if (typeof a != 'object' || typeof b != 'object') return false;
+
+      // Objects with different constructors are not equivalent, but `Object`s or `Array`s
+      // from different frames are.
+      var aCtor = a.constructor, bCtor = b.constructor;
+      if (aCtor !== bCtor && !(isFunction$1(aCtor) && aCtor instanceof aCtor &&
+                               isFunction$1(bCtor) && bCtor instanceof bCtor)
+                          && ('constructor' in a && 'constructor' in b)) {
+        return false;
+      }
+    }
+    // Assume equality for cyclic structures. The algorithm for detecting cyclic
+    // structures is adapted from ES 5.1 section 15.12.3, abstract operation `JO`.
+
+    // Initializing stack of traversed objects.
+    // It's done here since we only need them for objects and arrays comparison.
+    aStack = aStack || [];
+    bStack = bStack || [];
+    var length = aStack.length;
+    while (length--) {
+      // Linear search. Performance is inversely proportional to the number of
+      // unique nested structures.
+      if (aStack[length] === a) return bStack[length] === b;
+    }
+
+    // Add the first object to the stack of traversed objects.
+    aStack.push(a);
+    bStack.push(b);
+
+    // Recursively compare objects and arrays.
+    if (areArrays) {
+      // Compare array lengths to determine if a deep comparison is necessary.
+      length = a.length;
+      if (length !== b.length) return false;
+      // Deep compare the contents, ignoring non-numeric properties.
+      while (length--) {
+        if (!eq(a[length], b[length], aStack, bStack)) return false;
+      }
+    } else {
+      // Deep compare objects.
+      var _keys = keys(a), key;
+      length = _keys.length;
+      // Ensure that both objects contain the same number of properties before comparing deep equality.
+      if (keys(b).length !== length) return false;
+      while (length--) {
+        // Deep compare each member
+        key = _keys[length];
+        if (!(has$1(b, key) && eq(a[key], b[key], aStack, bStack))) return false;
+      }
+    }
+    // Remove the first object from the stack of traversed objects.
+    aStack.pop();
+    bStack.pop();
+    return true;
+  }
+
+  // Perform a deep comparison to check if two objects are equal.
+  function isEqual(a, b) {
+    return eq(a, b);
+  }
+
+  // Retrieve all the enumerable property names of an object.
+  function allKeys(obj) {
+    if (!isObject(obj)) return [];
+    var keys = [];
+    for (var key in obj) keys.push(key);
+    // Ahem, IE < 9.
+    if (hasEnumBug) collectNonEnumProps(obj, keys);
+    return keys;
+  }
+
+  // Since the regular `Object.prototype.toString` type tests don't work for
+  // some types in IE 11, we use a fingerprinting heuristic instead, based
+  // on the methods. It's not great, but it's the best we got.
+  // The fingerprint method lists are defined below.
+  function ie11fingerprint(methods) {
+    var length = getLength(methods);
+    return function(obj) {
+      if (obj == null) return false;
+      // `Map`, `WeakMap` and `Set` have no enumerable keys.
+      var keys = allKeys(obj);
+      if (getLength(keys)) return false;
+      for (var i = 0; i < length; i++) {
+        if (!isFunction$1(obj[methods[i]])) return false;
+      }
+      // If we are testing against `WeakMap`, we need to ensure that
+      // `obj` doesn't have a `forEach` method in order to distinguish
+      // it from a regular `Map`.
+      return methods !== weakMapMethods || !isFunction$1(obj[forEachName]);
+    };
+  }
+
+  // In the interest of compact minification, we write
+  // each string in the fingerprints only once.
+  var forEachName = 'forEach',
+      hasName = 'has',
+      commonInit = ['clear', 'delete'],
+      mapTail = ['get', hasName, 'set'];
+
+  // `Map`, `WeakMap` and `Set` each have slightly different
+  // combinations of the above sublists.
+  var mapMethods = commonInit.concat(forEachName, mapTail),
+      weakMapMethods = commonInit.concat(mapTail),
+      setMethods = ['add'].concat(commonInit, forEachName, hasName);
+
+  var isMap = isIE11 ? ie11fingerprint(mapMethods) : tagTester('Map');
+
+  var isWeakMap = isIE11 ? ie11fingerprint(weakMapMethods) : tagTester('WeakMap');
+
+  var isSet = isIE11 ? ie11fingerprint(setMethods) : tagTester('Set');
+
+  var isWeakSet = tagTester('WeakSet');
+
+  // Retrieve the values of an object's properties.
+  function values(obj) {
+    var _keys = keys(obj);
+    var length = _keys.length;
+    var values = Array(length);
+    for (var i = 0; i < length; i++) {
+      values[i] = obj[_keys[i]];
+    }
+    return values;
+  }
+
+  // Convert an object into a list of `[key, value]` pairs.
+  // The opposite of `_.object` with one argument.
+  function pairs(obj) {
+    var _keys = keys(obj);
+    var length = _keys.length;
+    var pairs = Array(length);
+    for (var i = 0; i < length; i++) {
+      pairs[i] = [_keys[i], obj[_keys[i]]];
+    }
+    return pairs;
+  }
+
+  // Invert the keys and values of an object. The values must be serializable.
+  function invert(obj) {
+    var result = {};
+    var _keys = keys(obj);
+    for (var i = 0, length = _keys.length; i < length; i++) {
+      result[obj[_keys[i]]] = _keys[i];
+    }
+    return result;
+  }
+
+  // Return a sorted list of the function names available on the object.
+  function functions(obj) {
+    var names = [];
+    for (var key in obj) {
+      if (isFunction$1(obj[key])) names.push(key);
+    }
+    return names.sort();
+  }
+
+  // An internal function for creating assigner functions.
+  function createAssigner(keysFunc, defaults) {
+    return function(obj) {
+      var length = arguments.length;
+      if (defaults) obj = Object(obj);
+      if (length < 2 || obj == null) return obj;
+      for (var index = 1; index < length; index++) {
+        var source = arguments[index],
+            keys = keysFunc(source),
+            l = keys.length;
+        for (var i = 0; i < l; i++) {
+          var key = keys[i];
+          if (!defaults || obj[key] === void 0) obj[key] = source[key];
+        }
+      }
+      return obj;
+    };
+  }
+
+  // Extend a given object with all the properties in passed-in object(s).
+  var extend = createAssigner(allKeys);
+
+  // Assigns a given object with all the own properties in the passed-in
+  // object(s).
+  // (https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Object/assign)
+  var extendOwn = createAssigner(keys);
+
+  // Fill in a given object with default properties.
+  var defaults = createAssigner(allKeys, true);
+
+  // Create a naked function reference for surrogate-prototype-swapping.
+  function ctor() {
+    return function(){};
+  }
+
+  // An internal function for creating a new object that inherits from another.
+  function baseCreate(prototype) {
+    if (!isObject(prototype)) return {};
+    if (nativeCreate) return nativeCreate(prototype);
+    var Ctor = ctor();
+    Ctor.prototype = prototype;
+    var result = new Ctor;
+    Ctor.prototype = null;
+    return result;
+  }
+
+  // Creates an object that inherits from the given prototype object.
+  // If additional properties are provided then they will be added to the
+  // created object.
+  function create(prototype, props) {
+    var result = baseCreate(prototype);
+    if (props) extendOwn(result, props);
+    return result;
+  }
+
+  // Create a (shallow-cloned) duplicate of an object.
+  function clone(obj) {
+    if (!isObject(obj)) return obj;
+    return isArray(obj) ? obj.slice() : extend({}, obj);
+  }
+
+  // Invokes `interceptor` with the `obj` and then returns `obj`.
+  // The primary purpose of this method is to "tap into" a method chain, in
+  // order to perform operations on intermediate results within the chain.
+  function tap(obj, interceptor) {
+    interceptor(obj);
+    return obj;
+  }
+
+  // Normalize a (deep) property `path` to array.
+  // Like `_.iteratee`, this function can be customized.
+  function toPath$1(path) {
+    return isArray(path) ? path : [path];
+  }
+  _$1.toPath = toPath$1;
+
+  // Internal wrapper for `_.toPath` to enable minification.
+  // Similar to `cb` for `_.iteratee`.
+  function toPath(path) {
+    return _$1.toPath(path);
+  }
+
+  // Internal function to obtain a nested property in `obj` along `path`.
+  function deepGet(obj, path) {
+    var length = path.length;
+    for (var i = 0; i < length; i++) {
+      if (obj == null) return void 0;
+      obj = obj[path[i]];
+    }
+    return length ? obj : void 0;
+  }
+
+  // Get the value of the (deep) property on `path` from `object`.
+  // If any property in `path` does not exist or if the value is
+  // `undefined`, return `defaultValue` instead.
+  // The `path` is normalized through `_.toPath`.
+  function get(object, path, defaultValue) {
+    var value = deepGet(object, toPath(path));
+    return isUndefined(value) ? defaultValue : value;
+  }
+
+  // Shortcut function for checking if an object has a given property directly on
+  // itself (in other words, not on a prototype). Unlike the internal `has`
+  // function, this public version can also traverse nested properties.
+  function has(obj, path) {
+    path = toPath(path);
+    var length = path.length;
+    for (var i = 0; i < length; i++) {
+      var key = path[i];
+      if (!has$1(obj, key)) return false;
+      obj = obj[key];
+    }
+    return !!length;
+  }
+
+  // Keep the identity function around for default iteratees.
+  function identity(value) {
+    return value;
+  }
+
+  // Returns a predicate for checking whether an object has a given set of
+  // `key:value` pairs.
+  function matcher(attrs) {
+    attrs = extendOwn({}, attrs);
+    return function(obj) {
+      return isMatch(obj, attrs);
+    };
+  }
+
+  // Creates a function that, when passed an object, will traverse that object’s
+  // properties down the given `path`, specified as an array of keys or indices.
+  function property(path) {
+    path = toPath(path);
+    return function(obj) {
+      return deepGet(obj, path);
+    };
+  }
+
+  // Internal function that returns an efficient (for current engines) version
+  // of the passed-in callback, to be repeatedly applied in other Underscore
+  // functions.
+  function optimizeCb(func, context, argCount) {
+    if (context === void 0) return func;
+    switch (argCount == null ? 3 : argCount) {
+      case 1: return function(value) {
+        return func.call(context, value);
+      };
+      // The 2-argument case is omitted because we’re not using it.
+      case 3: return function(value, index, collection) {
+        return func.call(context, value, index, collection);
+      };
+      case 4: return function(accumulator, value, index, collection) {
+        return func.call(context, accumulator, value, index, collection);
+      };
+    }
+    return function() {
+      return func.apply(context, arguments);
+    };
+  }
+
+  // An internal function to generate callbacks that can be applied to each
+  // element in a collection, returning the desired result — either `_.identity`,
+  // an arbitrary callback, a property matcher, or a property accessor.
+  function baseIteratee(value, context, argCount) {
+    if (value == null) return identity;
+    if (isFunction$1(value)) return optimizeCb(value, context, argCount);
+    if (isObject(value) && !isArray(value)) return matcher(value);
+    return property(value);
+  }
+
+  // External wrapper for our callback generator. Users may customize
+  // `_.iteratee` if they want additional predicate/iteratee shorthand styles.
+  // This abstraction hides the internal-only `argCount` argument.
+  function iteratee(value, context) {
+    return baseIteratee(value, context, Infinity);
+  }
+  _$1.iteratee = iteratee;
+
+  // The function we call internally to generate a callback. It invokes
+  // `_.iteratee` if overridden, otherwise `baseIteratee`.
+  function cb(value, context, argCount) {
+    if (_$1.iteratee !== iteratee) return _$1.iteratee(value, context);
+    return baseIteratee(value, context, argCount);
+  }
+
+  // Returns the results of applying the `iteratee` to each element of `obj`.
+  // In contrast to `_.map` it returns an object.
+  function mapObject(obj, iteratee, context) {
+    iteratee = cb(iteratee, context);
+    var _keys = keys(obj),
+        length = _keys.length,
+        results = {};
+    for (var index = 0; index < length; index++) {
+      var currentKey = _keys[index];
+      results[currentKey] = iteratee(obj[currentKey], currentKey, obj);
+    }
+    return results;
+  }
+
+  // Predicate-generating function. Often useful outside of Underscore.
+  function noop(){}
+
+  // Generates a function for a given object that returns a given property.
+  function propertyOf(obj) {
+    if (obj == null) return noop;
+    return function(path) {
+      return get(obj, path);
+    };
+  }
+
+  // Run a function **n** times.
+  function times(n, iteratee, context) {
+    var accum = Array(Math.max(0, n));
+    iteratee = optimizeCb(iteratee, context, 1);
+    for (var i = 0; i < n; i++) accum[i] = iteratee(i);
+    return accum;
+  }
+
+  // Return a random integer between `min` and `max` (inclusive).
+  function random(min, max) {
+    if (max == null) {
+      max = min;
+      min = 0;
+    }
+    return min + Math.floor(Math.random() * (max - min + 1));
+  }
+
+  // A (possibly faster) way to get the current timestamp as an integer.
+  var now = Date.now || function() {
+    return new Date().getTime();
+  };
+
+  // Internal helper to generate functions for escaping and unescaping strings
+  // to/from HTML interpolation.
+  function createEscaper(map) {
+    var escaper = function(match) {
+      return map[match];
+    };
+    // Regexes for identifying a key that needs to be escaped.
+    var source = '(?:' + keys(map).join('|') + ')';
+    var testRegexp = RegExp(source);
+    var replaceRegexp = RegExp(source, 'g');
+    return function(string) {
+      string = string == null ? '' : '' + string;
+      return testRegexp.test(string) ? string.replace(replaceRegexp, escaper) : string;
+    };
+  }
+
+  // Internal list of HTML entities for escaping.
+  var escapeMap = {
+    '&': '&amp;',
+    '<': '&lt;',
+    '>': '&gt;',
+    '"': '&quot;',
+    "'": '&#x27;',
+    '`': '&#x60;'
+  };
+
+  // Function for escaping strings to HTML interpolation.
+  var _escape = createEscaper(escapeMap);
+
+  // Internal list of HTML entities for unescaping.
+  var unescapeMap = invert(escapeMap);
+
+  // Function for unescaping strings from HTML interpolation.
+  var _unescape = createEscaper(unescapeMap);
+
+  // By default, Underscore uses ERB-style template delimiters. Change the
+  // following template settings to use alternative delimiters.
+  var templateSettings = _$1.templateSettings = {
+    evaluate: /<%([\s\S]+?)%>/g,
+    interpolate: /<%=([\s\S]+?)%>/g,
+    escape: /<%-([\s\S]+?)%>/g
+  };
+
+  // When customizing `_.templateSettings`, if you don't want to define an
+  // interpolation, evaluation or escaping regex, we need one that is
+  // guaranteed not to match.
+  var noMatch = /(.)^/;
+
+  // Certain characters need to be escaped so that they can be put into a
+  // string literal.
+  var escapes = {
+    "'": "'",
+    '\\': '\\',
+    '\r': 'r',
+    '\n': 'n',
+    '\u2028': 'u2028',
+    '\u2029': 'u2029'
+  };
+
+  var escapeRegExp = /\\|'|\r|\n|\u2028|\u2029/g;
+
+  function escapeChar(match) {
+    return '\\' + escapes[match];
+  }
+
+  // In order to prevent third-party code injection through
+  // `_.templateSettings.variable`, we test it against the following regular
+  // expression. It is intentionally a bit more liberal than just matching valid
+  // identifiers, but still prevents possible loopholes through defaults or
+  // destructuring assignment.
+  var bareIdentifier = /^\s*(\w|\$)+\s*$/;
+
+  // JavaScript micro-templating, similar to John Resig's implementation.
+  // Underscore templating handles arbitrary delimiters, preserves whitespace,
+  // and correctly escapes quotes within interpolated code.
+  // NB: `oldSettings` only exists for backwards compatibility.
+  function template(text, settings, oldSettings) {
+    if (!settings && oldSettings) settings = oldSettings;
+    settings = defaults({}, settings, _$1.templateSettings);
+
+    // Combine delimiters into one regular expression via alternation.
+    var matcher = RegExp([
+      (settings.escape || noMatch).source,
+      (settings.interpolate || noMatch).source,
+      (settings.evaluate || noMatch).source
+    ].join('|') + '|$', 'g');
+
+    // Compile the template source, escaping string literals appropriately.
+    var index = 0;
+    var source = "__p+='";
+    text.replace(matcher, function(match, escape, interpolate, evaluate, offset) {
+      source += text.slice(index, offset).replace(escapeRegExp, escapeChar);
+      index = offset + match.length;
+
+      if (escape) {
+        source += "'+\n((__t=(" + escape + "))==null?'':_.escape(__t))+\n'";
+      } else if (interpolate) {
+        source += "'+\n((__t=(" + interpolate + "))==null?'':__t)+\n'";
+      } else if (evaluate) {
+        source += "';\n" + evaluate + "\n__p+='";
+      }
+
+      // Adobe VMs need the match returned to produce the correct offset.
+      return match;
+    });
+    source += "';\n";
+
+    var argument = settings.variable;
+    if (argument) {
+      // Insure against third-party code injection. (CVE-2021-23358)
+      if (!bareIdentifier.test(argument)) throw new Error(
+        'variable is not a bare identifier: ' + argument
+      );
+    } else {
+      // If a variable is not specified, place data values in local scope.
+      source = 'with(obj||{}){\n' + source + '}\n';
+      argument = 'obj';
+    }
+
+    source = "var __t,__p='',__j=Array.prototype.join," +
+      "print=function(){__p+=__j.call(arguments,'');};\n" +
+      source + 'return __p;\n';
+
+    var render;
+    try {
+      render = new Function(argument, '_', source);
+    } catch (e) {
+      e.source = source;
+      throw e;
+    }
+
+    var template = function(data) {
+      return render.call(this, data, _$1);
+    };
+
+    // Provide the compiled source as a convenience for precompilation.
+    template.source = 'function(' + argument + '){\n' + source + '}';
+
+    return template;
+  }
+
+  // Traverses the children of `obj` along `path`. If a child is a function, it
+  // is invoked with its parent as context. Returns the value of the final
+  // child, or `fallback` if any child is undefined.
+  function result(obj, path, fallback) {
+    path = toPath(path);
+    var length = path.length;
+    if (!length) {
+      return isFunction$1(fallback) ? fallback.call(obj) : fallback;
+    }
+    for (var i = 0; i < length; i++) {
+      var prop = obj == null ? void 0 : obj[path[i]];
+      if (prop === void 0) {
+        prop = fallback;
+        i = length; // Ensure we don't continue iterating.
+      }
+      obj = isFunction$1(prop) ? prop.call(obj) : prop;
+    }
+    return obj;
+  }
+
+  // Generate a unique integer id (unique within the entire client session).
+  // Useful for temporary DOM ids.
+  var idCounter = 0;
+  function uniqueId(prefix) {
+    var id = ++idCounter + '';
+    return prefix ? prefix + id : id;
+  }
+
+  // Start chaining a wrapped Underscore object.
+  function chain(obj) {
+    var instance = _$1(obj);
+    instance._chain = true;
+    return instance;
+  }
+
+  // Internal function to execute `sourceFunc` bound to `context` with optional
+  // `args`. Determines whether to execute a function as a constructor or as a
+  // normal function.
+  function executeBound(sourceFunc, boundFunc, context, callingContext, args) {
+    if (!(callingContext instanceof boundFunc)) return sourceFunc.apply(context, args);
+    var self = baseCreate(sourceFunc.prototype);
+    var result = sourceFunc.apply(self, args);
+    if (isObject(result)) return result;
+    return self;
+  }
+
+  // Partially apply a function by creating a version that has had some of its
+  // arguments pre-filled, without changing its dynamic `this` context. `_` acts
+  // as a placeholder by default, allowing any combination of arguments to be
+  // pre-filled. Set `_.partial.placeholder` for a custom placeholder argument.
+  var partial = restArguments(function(func, boundArgs) {
+    var placeholder = partial.placeholder;
+    var bound = function() {
+      var position = 0, length = boundArgs.length;
+      var args = Array(length);
+      for (var i = 0; i < length; i++) {
+        args[i] = boundArgs[i] === placeholder ? arguments[position++] : boundArgs[i];
+      }
+      while (position < arguments.length) args.push(arguments[position++]);
+      return executeBound(func, bound, this, this, args);
+    };
+    return bound;
+  });
+
+  partial.placeholder = _$1;
+
+  // Create a function bound to a given object (assigning `this`, and arguments,
+  // optionally).
+  var bind = restArguments(function(func, context, args) {
+    if (!isFunction$1(func)) throw new TypeError('Bind must be called on a function');
+    var bound = restArguments(function(callArgs) {
+      return executeBound(func, bound, context, this, args.concat(callArgs));
+    });
+    return bound;
+  });
+
+  // Internal helper for collection methods to determine whether a collection
+  // should be iterated as an array or as an object.
+  // Related: https://people.mozilla.org/~jorendorff/es6-draft.html#sec-tolength
+  // Avoids a very nasty iOS 8 JIT bug on ARM-64. #2094
+  var isArrayLike = createSizePropertyCheck(getLength);
+
+  // Internal implementation of a recursive `flatten` function.
+  function flatten$1(input, depth, strict, output) {
+    output = output || [];
+    if (!depth && depth !== 0) {
+      depth = Infinity;
+    } else if (depth <= 0) {
+      return output.concat(input);
+    }
+    var idx = output.length;
+    for (var i = 0, length = getLength(input); i < length; i++) {
+      var value = input[i];
+      if (isArrayLike(value) && (isArray(value) || isArguments$1(value))) {
+        // Flatten current level of array or arguments object.
+        if (depth > 1) {
+          flatten$1(value, depth - 1, strict, output);
+          idx = output.length;
+        } else {
+          var j = 0, len = value.length;
+          while (j < len) output[idx++] = value[j++];
+        }
+      } else if (!strict) {
+        output[idx++] = value;
+      }
+    }
+    return output;
+  }
+
+  // Bind a number of an object's methods to that object. Remaining arguments
+  // are the method names to be bound. Useful for ensuring that all callbacks
+  // defined on an object belong to it.
+  var bindAll = restArguments(function(obj, keys) {
+    keys = flatten$1(keys, false, false);
+    var index = keys.length;
+    if (index < 1) throw new Error('bindAll must be passed function names');
+    while (index--) {
+      var key = keys[index];
+      obj[key] = bind(obj[key], obj);
+    }
+    return obj;
+  });
+
+  // Memoize an expensive function by storing its results.
+  function memoize(func, hasher) {
+    var memoize = function(key) {
+      var cache = memoize.cache;
+      var address = '' + (hasher ? hasher.apply(this, arguments) : key);
+      if (!has$1(cache, address)) cache[address] = func.apply(this, arguments);
+      return cache[address];
+    };
+    memoize.cache = {};
+    return memoize;
+  }
+
+  // Delays a function for the given number of milliseconds, and then calls
+  // it with the arguments supplied.
+  var delay = restArguments(function(func, wait, args) {
+    return setTimeout(function() {
+      return func.apply(null, args);
+    }, wait);
+  });
+
+  // Defers a function, scheduling it to run after the current call stack has
+  // cleared.
+  var defer = partial(delay, _$1, 1);
+
+  // Returns a function, that, when invoked, will only be triggered at most once
+  // during a given window of time. Normally, the throttled function will run
+  // as much as it can, without ever going more than once per `wait` duration;
+  // but if you'd like to disable the execution on the leading edge, pass
+  // `{leading: false}`. To disable execution on the trailing edge, ditto.
+  function throttle(func, wait, options) {
+    var timeout, context, args, result;
+    var previous = 0;
+    if (!options) options = {};
+
+    var later = function() {
+      previous = options.leading === false ? 0 : now();
+      timeout = null;
+      result = func.apply(context, args);
+      if (!timeout) context = args = null;
+    };
+
+    var throttled = function() {
+      var _now = now();
+      if (!previous && options.leading === false) previous = _now;
+      var remaining = wait - (_now - previous);
+      context = this;
+      args = arguments;
+      if (remaining <= 0 || remaining > wait) {
+        if (timeout) {
+          clearTimeout(timeout);
+          timeout = null;
+        }
+        previous = _now;
+        result = func.apply(context, args);
+        if (!timeout) context = args = null;
+      } else if (!timeout && options.trailing !== false) {
+        timeout = setTimeout(later, remaining);
+      }
+      return result;
+    };
+
+    throttled.cancel = function() {
+      clearTimeout(timeout);
+      previous = 0;
+      timeout = context = args = null;
+    };
+
+    return throttled;
+  }
+
+  // When a sequence of calls of the returned function ends, the argument
+  // function is triggered. The end of a sequence is defined by the `wait`
+  // parameter. If `immediate` is passed, the argument function will be
+  // triggered at the beginning of the sequence instead of at the end.
+  function debounce(func, wait, immediate) {
+    var timeout, previous, args, result, context;
+
+    var later = function() {
+      var passed = now() - previous;
+      if (wait > passed) {
+        timeout = setTimeout(later, wait - passed);
+      } else {
+        timeout = null;
+        if (!immediate) result = func.apply(context, args);
+        // This check is needed because `func` can recursively invoke `debounced`.
+        if (!timeout) args = context = null;
+      }
+    };
+
+    var debounced = restArguments(function(_args) {
+      context = this;
+      args = _args;
+      previous = now();
+      if (!timeout) {
+        timeout = setTimeout(later, wait);
+        if (immediate) result = func.apply(context, args);
+      }
+      return result;
+    });
+
+    debounced.cancel = function() {
+      clearTimeout(timeout);
+      timeout = args = context = null;
+    };
+
+    return debounced;
+  }
+
+  // Returns the first function passed as an argument to the second,
+  // allowing you to adjust arguments, run code before and after, and
+  // conditionally execute the original function.
+  function wrap(func, wrapper) {
+    return partial(wrapper, func);
+  }
+
+  // Returns a negated version of the passed-in predicate.
+  function negate(predicate) {
+    return function() {
+      return !predicate.apply(this, arguments);
+    };
+  }
+
+  // Returns a function that is the composition of a list of functions, each
+  // consuming the return value of the function that follows.
+  function compose() {
+    var args = arguments;
+    var start = args.length - 1;
+    return function() {
+      var i = start;
+      var result = args[start].apply(this, arguments);
+      while (i--) result = args[i].call(this, result);
+      return result;
+    };
+  }
+
+  // Returns a function that will only be executed on and after the Nth call.
+  function after(times, func) {
+    return function() {
+      if (--times < 1) {
+        return func.apply(this, arguments);
+      }
+    };
+  }
+
+  // Returns a function that will only be executed up to (but not including) the
+  // Nth call.
+  function before(times, func) {
+    var memo;
+    return function() {
+      if (--times > 0) {
+        memo = func.apply(this, arguments);
+      }
+      if (times <= 1) func = null;
+      return memo;
+    };
+  }
+
+  // Returns a function that will be executed at most one time, no matter how
+  // often you call it. Useful for lazy initialization.
+  var once = partial(before, 2);
+
+  // Returns the first key on an object that passes a truth test.
+  function findKey(obj, predicate, context) {
+    predicate = cb(predicate, context);
+    var _keys = keys(obj), key;
+    for (var i = 0, length = _keys.length; i < length; i++) {
+      key = _keys[i];
+      if (predicate(obj[key], key, obj)) return key;
+    }
+  }
+
+  // Internal function to generate `_.findIndex` and `_.findLastIndex`.
+  function createPredicateIndexFinder(dir) {
+    return function(array, predicate, context) {
+      predicate = cb(predicate, context);
+      var length = getLength(array);
+      var index = dir > 0 ? 0 : length - 1;
+      for (; index >= 0 && index < length; index += dir) {
+        if (predicate(array[index], index, array)) return index;
+      }
+      return -1;
+    };
+  }
+
+  // Returns the first index on an array-like that passes a truth test.
+  var findIndex = createPredicateIndexFinder(1);
+
+  // Returns the last index on an array-like that passes a truth test.
+  var findLastIndex = createPredicateIndexFinder(-1);
+
+  // Use a comparator function to figure out the smallest index at which
+  // an object should be inserted so as to maintain order. Uses binary search.
+  function sortedIndex(array, obj, iteratee, context) {
+    iteratee = cb(iteratee, context, 1);
+    var value = iteratee(obj);
+    var low = 0, high = getLength(array);
+    while (low < high) {
+      var mid = Math.floor((low + high) / 2);
+      if (iteratee(array[mid]) < value) low = mid + 1; else high = mid;
+    }
+    return low;
+  }
+
+  // Internal function to generate the `_.indexOf` and `_.lastIndexOf` functions.
+  function createIndexFinder(dir, predicateFind, sortedIndex) {
+    return function(array, item, idx) {
+      var i = 0, length = getLength(array);
+      if (typeof idx == 'number') {
+        if (dir > 0) {
+          i = idx >= 0 ? idx : Math.max(idx + length, i);
+        } else {
+          length = idx >= 0 ? Math.min(idx + 1, length) : idx + length + 1;
+        }
+      } else if (sortedIndex && idx && length) {
+        idx = sortedIndex(array, item);
+        return array[idx] === item ? idx : -1;
+      }
+      if (item !== item) {
+        idx = predicateFind(slice.call(array, i, length), isNaN$1);
+        return idx >= 0 ? idx + i : -1;
+      }
+      for (idx = dir > 0 ? i : length - 1; idx >= 0 && idx < length; idx += dir) {
+        if (array[idx] === item) return idx;
+      }
+      return -1;
+    };
+  }
+
+  // Return the position of the first occurrence of an item in an array,
+  // or -1 if the item is not included in the array.
+  // If the array is large and already in sort order, pass `true`
+  // for **isSorted** to use binary search.
+  var indexOf = createIndexFinder(1, findIndex, sortedIndex);
+
+  // Return the position of the last occurrence of an item in an array,
+  // or -1 if the item is not included in the array.
+  var lastIndexOf = createIndexFinder(-1, findLastIndex);
+
+  // Return the first value which passes a truth test.
+  function find(obj, predicate, context) {
+    var keyFinder = isArrayLike(obj) ? findIndex : findKey;
+    var key = keyFinder(obj, predicate, context);
+    if (key !== void 0 && key !== -1) return obj[key];
+  }
+
+  // Convenience version of a common use case of `_.find`: getting the first
+  // object containing specific `key:value` pairs.
+  function findWhere(obj, attrs) {
+    return find(obj, matcher(attrs));
+  }
+
+  // The cornerstone for collection functions, an `each`
+  // implementation, aka `forEach`.
+  // Handles raw objects in addition to array-likes. Treats all
+  // sparse array-likes as if they were dense.
+  function each(obj, iteratee, context) {
+    iteratee = optimizeCb(iteratee, context);
+    var i, length;
+    if (isArrayLike(obj)) {
+      for (i = 0, length = obj.length; i < length; i++) {
+        iteratee(obj[i], i, obj);
+      }
+    } else {
+      var _keys = keys(obj);
+      for (i = 0, length = _keys.length; i < length; i++) {
+        iteratee(obj[_keys[i]], _keys[i], obj);
+      }
+    }
+    return obj;
+  }
+
+  // Return the results of applying the iteratee to each element.
+  function map(obj, iteratee, context) {
+    iteratee = cb(iteratee, context);
+    var _keys = !isArrayLike(obj) && keys(obj),
+        length = (_keys || obj).length,
+        results = Array(length);
+    for (var index = 0; index < length; index++) {
+      var currentKey = _keys ? _keys[index] : index;
+      results[index] = iteratee(obj[currentKey], currentKey, obj);
+    }
+    return results;
+  }
+
+  // Internal helper to create a reducing function, iterating left or right.
+  function createReduce(dir) {
+    // Wrap code that reassigns argument variables in a separate function than
+    // the one that accesses `arguments.length` to avoid a perf hit. (#1991)
+    var reducer = function(obj, iteratee, memo, initial) {
+      var _keys = !isArrayLike(obj) && keys(obj),
+          length = (_keys || obj).length,
+          index = dir > 0 ? 0 : length - 1;
+      if (!initial) {
+        memo = obj[_keys ? _keys[index] : index];
+        index += dir;
+      }
+      for (; index >= 0 && index < length; index += dir) {
+        var currentKey = _keys ? _keys[index] : index;
+        memo = iteratee(memo, obj[currentKey], currentKey, obj);
+      }
+      return memo;
+    };
+
+    return function(obj, iteratee, memo, context) {
+      var initial = arguments.length >= 3;
+      return reducer(obj, optimizeCb(iteratee, context, 4), memo, initial);
+    };
+  }
+
+  // **Reduce** builds up a single result from a list of values, aka `inject`,
+  // or `foldl`.
+  var reduce = createReduce(1);
+
+  // The right-associative version of reduce, also known as `foldr`.
+  var reduceRight = createReduce(-1);
+
+  // Return all the elements that pass a truth test.
+  function filter(obj, predicate, context) {
+    var results = [];
+    predicate = cb(predicate, context);
+    each(obj, function(value, index, list) {
+      if (predicate(value, index, list)) results.push(value);
+    });
+    return results;
+  }
+
+  // Return all the elements for which a truth test fails.
+  function reject(obj, predicate, context) {
+    return filter(obj, negate(cb(predicate)), context);
+  }
+
+  // Determine whether all of the elements pass a truth test.
+  function every(obj, predicate, context) {
+    predicate = cb(predicate, context);
+    var _keys = !isArrayLike(obj) && keys(obj),
+        length = (_keys || obj).length;
+    for (var index = 0; index < length; index++) {
+      var currentKey = _keys ? _keys[index] : index;
+      if (!predicate(obj[currentKey], currentKey, obj)) return false;
+    }
+    return true;
+  }
+
+  // Determine if at least one element in the object passes a truth test.
+  function some(obj, predicate, context) {
+    predicate = cb(predicate, context);
+    var _keys = !isArrayLike(obj) && keys(obj),
+        length = (_keys || obj).length;
+    for (var index = 0; index < length; index++) {
+      var currentKey = _keys ? _keys[index] : index;
+      if (predicate(obj[currentKey], currentKey, obj)) return true;
+    }
+    return false;
+  }
+
+  // Determine if the array or object contains a given item (using `===`).
+  function contains(obj, item, fromIndex, guard) {
+    if (!isArrayLike(obj)) obj = values(obj);
+    if (typeof fromIndex != 'number' || guard) fromIndex = 0;
+    return indexOf(obj, item, fromIndex) >= 0;
+  }
+
+  // Invoke a method (with arguments) on every item in a collection.
+  var invoke = restArguments(function(obj, path, args) {
+    var contextPath, func;
+    if (isFunction$1(path)) {
+      func = path;
+    } else {
+      path = toPath(path);
+      contextPath = path.slice(0, -1);
+      path = path[path.length - 1];
+    }
+    return map(obj, function(context) {
+      var method = func;
+      if (!method) {
+        if (contextPath && contextPath.length) {
+          context = deepGet(context, contextPath);
+        }
+        if (context == null) return void 0;
+        method = context[path];
+      }
+      return method == null ? method : method.apply(context, args);
+    });
+  });
+
+  // Convenience version of a common use case of `_.map`: fetching a property.
+  function pluck(obj, key) {
+    return map(obj, property(key));
+  }
+
+  // Convenience version of a common use case of `_.filter`: selecting only
+  // objects containing specific `key:value` pairs.
+  function where(obj, attrs) {
+    return filter(obj, matcher(attrs));
+  }
+
+  // Return the maximum element (or element-based computation).
+  function max(obj, iteratee, context) {
+    var result = -Infinity, lastComputed = -Infinity,
+        value, computed;
+    if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) {
+      obj = isArrayLike(obj) ? obj : values(obj);
+      for (var i = 0, length = obj.length; i < length; i++) {
+        value = obj[i];
+        if (value != null && value > result) {
+          result = value;
+        }
+      }
+    } else {
+      iteratee = cb(iteratee, context);
+      each(obj, function(v, index, list) {
+        computed = iteratee(v, index, list);
+        if (computed > lastComputed || computed === -Infinity && result === -Infinity) {
+          result = v;
+          lastComputed = computed;
+        }
+      });
+    }
+    return result;
+  }
+
+  // Return the minimum element (or element-based computation).
+  function min(obj, iteratee, context) {
+    var result = Infinity, lastComputed = Infinity,
+        value, computed;
+    if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) {
+      obj = isArrayLike(obj) ? obj : values(obj);
+      for (var i = 0, length = obj.length; i < length; i++) {
+        value = obj[i];
+        if (value != null && value < result) {
+          result = value;
+        }
+      }
+    } else {
+      iteratee = cb(iteratee, context);
+      each(obj, function(v, index, list) {
+        computed = iteratee(v, index, list);
+        if (computed < lastComputed || computed === Infinity && result === Infinity) {
+          result = v;
+          lastComputed = computed;
+        }
+      });
+    }
+    return result;
+  }
+
+  // Sample **n** random values from a collection using the modern version of the
+  // [Fisher-Yates shuffle](https://en.wikipedia.org/wiki/Fisher–Yates_shuffle).
+  // If **n** is not specified, returns a single random element.
+  // The internal `guard` argument allows it to work with `_.map`.
+  function sample(obj, n, guard) {
+    if (n == null || guard) {
+      if (!isArrayLike(obj)) obj = values(obj);
+      return obj[random(obj.length - 1)];
+    }
+    var sample = isArrayLike(obj) ? clone(obj) : values(obj);
+    var length = getLength(sample);
+    n = Math.max(Math.min(n, length), 0);
+    var last = length - 1;
+    for (var index = 0; index < n; index++) {
+      var rand = random(index, last);
+      var temp = sample[index];
+      sample[index] = sample[rand];
+      sample[rand] = temp;
+    }
+    return sample.slice(0, n);
+  }
+
+  // Shuffle a collection.
+  function shuffle(obj) {
+    return sample(obj, Infinity);
+  }
+
+  // Sort the object's values by a criterion produced by an iteratee.
+  function sortBy(obj, iteratee, context) {
+    var index = 0;
+    iteratee = cb(iteratee, context);
+    return pluck(map(obj, function(value, key, list) {
+      return {
+        value: value,
+        index: index++,
+        criteria: iteratee(value, key, list)
+      };
+    }).sort(function(left, right) {
+      var a = left.criteria;
+      var b = right.criteria;
+      if (a !== b) {
+        if (a > b || a === void 0) return 1;
+        if (a < b || b === void 0) return -1;
+      }
+      return left.index - right.index;
+    }), 'value');
+  }
+
+  // An internal function used for aggregate "group by" operations.
+  function group(behavior, partition) {
+    return function(obj, iteratee, context) {
+      var result = partition ? [[], []] : {};
+      iteratee = cb(iteratee, context);
+      each(obj, function(value, index) {
+        var key = iteratee(value, index, obj);
+        behavior(result, value, key);
+      });
+      return result;
+    };
+  }
+
+  // Groups the object's values by a criterion. Pass either a string attribute
+  // to group by, or a function that returns the criterion.
+  var groupBy = group(function(result, value, key) {
+    if (has$1(result, key)) result[key].push(value); else result[key] = [value];
+  });
+
+  // Indexes the object's values by a criterion, similar to `_.groupBy`, but for
+  // when you know that your index values will be unique.
+  var indexBy = group(function(result, value, key) {
+    result[key] = value;
+  });
+
+  // Counts instances of an object that group by a certain criterion. Pass
+  // either a string attribute to count by, or a function that returns the
+  // criterion.
+  var countBy = group(function(result, value, key) {
+    if (has$1(result, key)) result[key]++; else result[key] = 1;
+  });
+
+  // Split a collection into two arrays: one whose elements all pass the given
+  // truth test, and one whose elements all do not pass the truth test.
+  var partition = group(function(result, value, pass) {
+    result[pass ? 0 : 1].push(value);
+  }, true);
+
+  // Safely create a real, live array from anything iterable.
+  var reStrSymbol = /[^\ud800-\udfff]|[\ud800-\udbff][\udc00-\udfff]|[\ud800-\udfff]/g;
+  function toArray(obj) {
+    if (!obj) return [];
+    if (isArray(obj)) return slice.call(obj);
+    if (isString(obj)) {
+      // Keep surrogate pair characters together.
+      return obj.match(reStrSymbol);
+    }
+    if (isArrayLike(obj)) return map(obj, identity);
+    return values(obj);
+  }
+
+  // Return the number of elements in a collection.
+  function size(obj) {
+    if (obj == null) return 0;
+    return isArrayLike(obj) ? obj.length : keys(obj).length;
+  }
+
+  // Internal `_.pick` helper function to determine whether `key` is an enumerable
+  // property name of `obj`.
+  function keyInObj(value, key, obj) {
+    return key in obj;
+  }
+
+  // Return a copy of the object only containing the allowed properties.
+  var pick = restArguments(function(obj, keys) {
+    var result = {}, iteratee = keys[0];
+    if (obj == null) return result;
+    if (isFunction$1(iteratee)) {
+      if (keys.length > 1) iteratee = optimizeCb(iteratee, keys[1]);
+      keys = allKeys(obj);
+    } else {
+      iteratee = keyInObj;
+      keys = flatten$1(keys, false, false);
+      obj = Object(obj);
+    }
+    for (var i = 0, length = keys.length; i < length; i++) {
+      var key = keys[i];
+      var value = obj[key];
+      if (iteratee(value, key, obj)) result[key] = value;
+    }
+    return result;
+  });
+
+  // Return a copy of the object without the disallowed properties.
+  var omit = restArguments(function(obj, keys) {
+    var iteratee = keys[0], context;
+    if (isFunction$1(iteratee)) {
+      iteratee = negate(iteratee);
+      if (keys.length > 1) context = keys[1];
+    } else {
+      keys = map(flatten$1(keys, false, false), String);
+      iteratee = function(value, key) {
+        return !contains(keys, key);
+      };
+    }
+    return pick(obj, iteratee, context);
+  });
+
+  // Returns everything but the last entry of the array. Especially useful on
+  // the arguments object. Passing **n** will return all the values in
+  // the array, excluding the last N.
+  function initial(array, n, guard) {
+    return slice.call(array, 0, Math.max(0, array.length - (n == null || guard ? 1 : n)));
+  }
+
+  // Get the first element of an array. Passing **n** will return the first N
+  // values in the array. The **guard** check allows it to work with `_.map`.
+  function first(array, n, guard) {
+    if (array == null || array.length < 1) return n == null || guard ? void 0 : [];
+    if (n == null || guard) return array[0];
+    return initial(array, array.length - n);
+  }
+
+  // Returns everything but the first entry of the `array`. Especially useful on
+  // the `arguments` object. Passing an **n** will return the rest N values in the
+  // `array`.
+  function rest(array, n, guard) {
+    return slice.call(array, n == null || guard ? 1 : n);
+  }
+
+  // Get the last element of an array. Passing **n** will return the last N
+  // values in the array.
+  function last(array, n, guard) {
+    if (array == null || array.length < 1) return n == null || guard ? void 0 : [];
+    if (n == null || guard) return array[array.length - 1];
+    return rest(array, Math.max(0, array.length - n));
+  }
+
+  // Trim out all falsy values from an array.
+  function compact(array) {
+    return filter(array, Boolean);
+  }
+
+  // Flatten out an array, either recursively (by default), or up to `depth`.
+  // Passing `true` or `false` as `depth` means `1` or `Infinity`, respectively.
+  function flatten(array, depth) {
+    return flatten$1(array, depth, false);
+  }
+
+  // Take the difference between one array and a number of other arrays.
+  // Only the elements present in just the first array will remain.
+  var difference = restArguments(function(array, rest) {
+    rest = flatten$1(rest, true, true);
+    return filter(array, function(value){
+      return !contains(rest, value);
+    });
+  });
+
+  // Return a version of the array that does not contain the specified value(s).
+  var without = restArguments(function(array, otherArrays) {
+    return difference(array, otherArrays);
+  });
+
+  // Produce a duplicate-free version of the array. If the array has already
+  // been sorted, you have the option of using a faster algorithm.
+  // The faster algorithm will not work with an iteratee if the iteratee
+  // is not a one-to-one function, so providing an iteratee will disable
+  // the faster algorithm.
+  function uniq(array, isSorted, iteratee, context) {
+    if (!isBoolean(isSorted)) {
+      context = iteratee;
+      iteratee = isSorted;
+      isSorted = false;
+    }
+    if (iteratee != null) iteratee = cb(iteratee, context);
+    var result = [];
+    var seen = [];
+    for (var i = 0, length = getLength(array); i < length; i++) {
+      var value = array[i],
+          computed = iteratee ? iteratee(value, i, array) : value;
+      if (isSorted && !iteratee) {
+        if (!i || seen !== computed) result.push(value);
+        seen = computed;
+      } else if (iteratee) {
+        if (!contains(seen, computed)) {
+          seen.push(computed);
+          result.push(value);
+        }
+      } else if (!contains(result, value)) {
+        result.push(value);
+      }
+    }
+    return result;
+  }
+
+  // Produce an array that contains the union: each distinct element from all of
+  // the passed-in arrays.
+  var union = restArguments(function(arrays) {
+    return uniq(flatten$1(arrays, true, true));
+  });
+
+  // Produce an array that contains every item shared between all the
+  // passed-in arrays.
+  function intersection(array) {
+    var result = [];
+    var argsLength = arguments.length;
+    for (var i = 0, length = getLength(array); i < length; i++) {
+      var item = array[i];
+      if (contains(result, item)) continue;
+      var j;
+      for (j = 1; j < argsLength; j++) {
+        if (!contains(arguments[j], item)) break;
+      }
+      if (j === argsLength) result.push(item);
+    }
+    return result;
+  }
+
+  // Complement of zip. Unzip accepts an array of arrays and groups
+  // each array's elements on shared indices.
+  function unzip(array) {
+    var length = array && max(array, getLength).length || 0;
+    var result = Array(length);
+
+    for (var index = 0; index < length; index++) {
+      result[index] = pluck(array, index);
+    }
+    return result;
+  }
+
+  // Zip together multiple lists into a single array -- elements that share
+  // an index go together.
+  var zip = restArguments(unzip);
+
+  // Converts lists into objects. Pass either a single array of `[key, value]`
+  // pairs, or two parallel arrays of the same length -- one of keys, and one of
+  // the corresponding values. Passing by pairs is the reverse of `_.pairs`.
+  function object(list, values) {
+    var result = {};
+    for (var i = 0, length = getLength(list); i < length; i++) {
+      if (values) {
+        result[list[i]] = values[i];
+      } else {
+        result[list[i][0]] = list[i][1];
+      }
+    }
+    return result;
+  }
+
+  // Generate an integer Array containing an arithmetic progression. A port of
+  // the native Python `range()` function. See
+  // [the Python documentation](https://docs.python.org/library/functions.html#range).
+  function range(start, stop, step) {
+    if (stop == null) {
+      stop = start || 0;
+      start = 0;
+    }
+    if (!step) {
+      step = stop < start ? -1 : 1;
+    }
+
+    var length = Math.max(Math.ceil((stop - start) / step), 0);
+    var range = Array(length);
+
+    for (var idx = 0; idx < length; idx++, start += step) {
+      range[idx] = start;
+    }
+
+    return range;
+  }
+
+  // Chunk a single array into multiple arrays, each containing `count` or fewer
+  // items.
+  function chunk(array, count) {
+    if (count == null || count < 1) return [];
+    var result = [];
+    var i = 0, length = array.length;
+    while (i < length) {
+      result.push(slice.call(array, i, i += count));
+    }
+    return result;
+  }
+
+  // Helper function to continue chaining intermediate results.
+  function chainResult(instance, obj) {
+    return instance._chain ? _$1(obj).chain() : obj;
+  }
+
+  // Add your own custom functions to the Underscore object.
+  function mixin(obj) {
+    each(functions(obj), function(name) {
+      var func = _$1[name] = obj[name];
+      _$1.prototype[name] = function() {
+        var args = [this._wrapped];
+        push.apply(args, arguments);
+        return chainResult(this, func.apply(_$1, args));
+      };
+    });
+    return _$1;
+  }
+
+  // Add all mutator `Array` functions to the wrapper.
+  each(['pop', 'push', 'reverse', 'shift', 'sort', 'splice', 'unshift'], function(name) {
+    var method = ArrayProto[name];
+    _$1.prototype[name] = function() {
+      var obj = this._wrapped;
+      if (obj != null) {
+        method.apply(obj, arguments);
+        if ((name === 'shift' || name === 'splice') && obj.length === 0) {
+          delete obj[0];
+        }
+      }
+      return chainResult(this, obj);
+    };
+  });
+
+  // Add all accessor `Array` functions to the wrapper.
+  each(['concat', 'join', 'slice'], function(name) {
+    var method = ArrayProto[name];
+    _$1.prototype[name] = function() {
+      var obj = this._wrapped;
+      if (obj != null) obj = method.apply(obj, arguments);
+      return chainResult(this, obj);
+    };
+  });
+
+  // Named Exports
+
+  var allExports = {
+    __proto__: null,
+    VERSION: VERSION,
+    restArguments: restArguments,
+    isObject: isObject,
+    isNull: isNull,
+    isUndefined: isUndefined,
+    isBoolean: isBoolean,
+    isElement: isElement,
+    isString: isString,
+    isNumber: isNumber,
+    isDate: isDate,
+    isRegExp: isRegExp,
+    isError: isError,
+    isSymbol: isSymbol,
+    isArrayBuffer: isArrayBuffer,
+    isDataView: isDataView$1,
+    isArray: isArray,
+    isFunction: isFunction$1,
+    isArguments: isArguments$1,
+    isFinite: isFinite$1,
+    isNaN: isNaN$1,
+    isTypedArray: isTypedArray$1,
+    isEmpty: isEmpty,
+    isMatch: isMatch,
+    isEqual: isEqual,
+    isMap: isMap,
+    isWeakMap: isWeakMap,
+    isSet: isSet,
+    isWeakSet: isWeakSet,
+    keys: keys,
+    allKeys: allKeys,
+    values: values,
+    pairs: pairs,
+    invert: invert,
+    functions: functions,
+    methods: functions,
+    extend: extend,
+    extendOwn: extendOwn,
+    assign: extendOwn,
+    defaults: defaults,
+    create: create,
+    clone: clone,
+    tap: tap,
+    get: get,
+    has: has,
+    mapObject: mapObject,
+    identity: identity,
+    constant: constant,
+    noop: noop,
+    toPath: toPath$1,
+    property: property,
+    propertyOf: propertyOf,
+    matcher: matcher,
+    matches: matcher,
+    times: times,
+    random: random,
+    now: now,
+    escape: _escape,
+    unescape: _unescape,
+    templateSettings: templateSettings,
+    template: template,
+    result: result,
+    uniqueId: uniqueId,
+    chain: chain,
+    iteratee: iteratee,
+    partial: partial,
+    bind: bind,
+    bindAll: bindAll,
+    memoize: memoize,
+    delay: delay,
+    defer: defer,
+    throttle: throttle,
+    debounce: debounce,
+    wrap: wrap,
+    negate: negate,
+    compose: compose,
+    after: after,
+    before: before,
+    once: once,
+    findKey: findKey,
+    findIndex: findIndex,
+    findLastIndex: findLastIndex,
+    sortedIndex: sortedIndex,
+    indexOf: indexOf,
+    lastIndexOf: lastIndexOf,
+    find: find,
+    detect: find,
+    findWhere: findWhere,
+    each: each,
+    forEach: each,
+    map: map,
+    collect: map,
+    reduce: reduce,
+    foldl: reduce,
+    inject: reduce,
+    reduceRight: reduceRight,
+    foldr: reduceRight,
+    filter: filter,
+    select: filter,
+    reject: reject,
+    every: every,
+    all: every,
+    some: some,
+    any: some,
+    contains: contains,
+    includes: contains,
+    include: contains,
+    invoke: invoke,
+    pluck: pluck,
+    where: where,
+    max: max,
+    min: min,
+    shuffle: shuffle,
+    sample: sample,
+    sortBy: sortBy,
+    groupBy: groupBy,
+    indexBy: indexBy,
+    countBy: countBy,
+    partition: partition,
+    toArray: toArray,
+    size: size,
+    pick: pick,
+    omit: omit,
+    first: first,
+    head: first,
+    take: first,
+    initial: initial,
+    last: last,
+    rest: rest,
+    tail: rest,
+    drop: rest,
+    compact: compact,
+    flatten: flatten,
+    without: without,
+    uniq: uniq,
+    unique: uniq,
+    union: union,
+    intersection: intersection,
+    difference: difference,
+    unzip: unzip,
+    transpose: unzip,
+    zip: zip,
+    object: object,
+    range: range,
+    chunk: chunk,
+    mixin: mixin,
+    'default': _$1
+  };
+
+  // Default Export
+
+  // Add all of the Underscore functions to the wrapper object.
+  var _ = mixin(allExports);
+  // Legacy Node.js API.
+  _._ = _;
+
+  return _;
+
+})));
+//# sourceMappingURL=underscore-umd.js.map
diff --git a/docs/api/assets/underscore-1.3.1.js b/docs/api/assets/underscore-1.3.1.js
deleted file mode 100644
index 208d4cd8..00000000
--- a/docs/api/assets/underscore-1.3.1.js
+++ /dev/null
@@ -1,999 +0,0 @@
-//     Underscore.js 1.3.1
-//     (c) 2009-2012 Jeremy Ashkenas, DocumentCloud Inc.
-//     Underscore is freely distributable under the MIT license.
-//     Portions of Underscore are inspired or borrowed from Prototype,
-//     Oliver Steele's Functional, and John Resig's Micro-Templating.
-//     For all details and documentation:
-//     http://documentcloud.github.com/underscore
-
-(function() {
-
-  // Baseline setup
-  // --------------
-
-  // Establish the root object, `window` in the browser, or `global` on the server.
-  var root = this;
-
-  // Save the previous value of the `_` variable.
-  var previousUnderscore = root._;
-
-  // Establish the object that gets returned to break out of a loop iteration.
-  var breaker = {};
-
-  // Save bytes in the minified (but not gzipped) version:
-  var ArrayProto = Array.prototype, ObjProto = Object.prototype, FuncProto = Function.prototype;
-
-  // Create quick reference variables for speed access to core prototypes.
-  var slice            = ArrayProto.slice,
-      unshift          = ArrayProto.unshift,
-      toString         = ObjProto.toString,
-      hasOwnProperty   = ObjProto.hasOwnProperty;
-
-  // All **ECMAScript 5** native function implementations that we hope to use
-  // are declared here.
-  var
-    nativeForEach      = ArrayProto.forEach,
-    nativeMap          = ArrayProto.map,
-    nativeReduce       = ArrayProto.reduce,
-    nativeReduceRight  = ArrayProto.reduceRight,
-    nativeFilter       = ArrayProto.filter,
-    nativeEvery        = ArrayProto.every,
-    nativeSome         = ArrayProto.some,
-    nativeIndexOf      = ArrayProto.indexOf,
-    nativeLastIndexOf  = ArrayProto.lastIndexOf,
-    nativeIsArray      = Array.isArray,
-    nativeKeys         = Object.keys,
-    nativeBind         = FuncProto.bind;
-
-  // Create a safe reference to the Underscore object for use below.
-  var _ = function(obj) { return new wrapper(obj); };
-
-  // Export the Underscore object for **Node.js**, with
-  // backwards-compatibility for the old `require()` API. If we're in
-  // the browser, add `_` as a global object via a string identifier,
-  // for Closure Compiler "advanced" mode.
-  if (typeof exports !== 'undefined') {
-    if (typeof module !== 'undefined' && module.exports) {
-      exports = module.exports = _;
-    }
-    exports._ = _;
-  } else {
-    root['_'] = _;
-  }
-
-  // Current version.
-  _.VERSION = '1.3.1';
-
-  // Collection Functions
-  // --------------------
-
-  // The cornerstone, an `each` implementation, aka `forEach`.
-  // Handles objects with the built-in `forEach`, arrays, and raw objects.
-  // Delegates to **ECMAScript 5**'s native `forEach` if available.
-  var each = _.each = _.forEach = function(obj, iterator, context) {
-    if (obj == null) return;
-    if (nativeForEach && obj.forEach === nativeForEach) {
-      obj.forEach(iterator, context);
-    } else if (obj.length === +obj.length) {
-      for (var i = 0, l = obj.length; i < l; i++) {
-        if (i in obj && iterator.call(context, obj[i], i, obj) === breaker) return;
-      }
-    } else {
-      for (var key in obj) {
-        if (_.has(obj, key)) {
-          if (iterator.call(context, obj[key], key, obj) === breaker) return;
-        }
-      }
-    }
-  };
-
-  // Return the results of applying the iterator to each element.
-  // Delegates to **ECMAScript 5**'s native `map` if available.
-  _.map = _.collect = function(obj, iterator, context) {
-    var results = [];
-    if (obj == null) return results;
-    if (nativeMap && obj.map === nativeMap) return obj.map(iterator, context);
-    each(obj, function(value, index, list) {
-      results[results.length] = iterator.call(context, value, index, list);
-    });
-    if (obj.length === +obj.length) results.length = obj.length;
-    return results;
-  };
-
-  // **Reduce** builds up a single result from a list of values, aka `inject`,
-  // or `foldl`. Delegates to **ECMAScript 5**'s native `reduce` if available.
-  _.reduce = _.foldl = _.inject = function(obj, iterator, memo, context) {
-    var initial = arguments.length > 2;
-    if (obj == null) obj = [];
-    if (nativeReduce && obj.reduce === nativeReduce) {
-      if (context) iterator = _.bind(iterator, context);
-      return initial ? obj.reduce(iterator, memo) : obj.reduce(iterator);
-    }
-    each(obj, function(value, index, list) {
-      if (!initial) {
-        memo = value;
-        initial = true;
-      } else {
-        memo = iterator.call(context, memo, value, index, list);
-      }
-    });
-    if (!initial) throw new TypeError('Reduce of empty array with no initial value');
-    return memo;
-  };
-
-  // The right-associative version of reduce, also known as `foldr`.
-  // Delegates to **ECMAScript 5**'s native `reduceRight` if available.
-  _.reduceRight = _.foldr = function(obj, iterator, memo, context) {
-    var initial = arguments.length > 2;
-    if (obj == null) obj = [];
-    if (nativeReduceRight && obj.reduceRight === nativeReduceRight) {
-      if (context) iterator = _.bind(iterator, context);
-      return initial ? obj.reduceRight(iterator, memo) : obj.reduceRight(iterator);
-    }
-    var reversed = _.toArray(obj).reverse();
-    if (context && !initial) iterator = _.bind(iterator, context);
-    return initial ? _.reduce(reversed, iterator, memo, context) : _.reduce(reversed, iterator);
-  };
-
-  // Return the first value which passes a truth test. Aliased as `detect`.
-  _.find = _.detect = function(obj, iterator, context) {
-    var result;
-    any(obj, function(value, index, list) {
-      if (iterator.call(context, value, index, list)) {
-        result = value;
-        return true;
-      }
-    });
-    return result;
-  };
-
-  // Return all the elements that pass a truth test.
-  // Delegates to **ECMAScript 5**'s native `filter` if available.
-  // Aliased as `select`.
-  _.filter = _.select = function(obj, iterator, context) {
-    var results = [];
-    if (obj == null) return results;
-    if (nativeFilter && obj.filter === nativeFilter) return obj.filter(iterator, context);
-    each(obj, function(value, index, list) {
-      if (iterator.call(context, value, index, list)) results[results.length] = value;
-    });
-    return results;
-  };
-
-  // Return all the elements for which a truth test fails.
-  _.reject = function(obj, iterator, context) {
-    var results = [];
-    if (obj == null) return results;
-    each(obj, function(value, index, list) {
-      if (!iterator.call(context, value, index, list)) results[results.length] = value;
-    });
-    return results;
-  };
-
-  // Determine whether all of the elements match a truth test.
-  // Delegates to **ECMAScript 5**'s native `every` if available.
-  // Aliased as `all`.
-  _.every = _.all = function(obj, iterator, context) {
-    var result = true;
-    if (obj == null) return result;
-    if (nativeEvery && obj.every === nativeEvery) return obj.every(iterator, context);
-    each(obj, function(value, index, list) {
-      if (!(result = result && iterator.call(context, value, index, list))) return breaker;
-    });
-    return result;
-  };
-
-  // Determine if at least one element in the object matches a truth test.
-  // Delegates to **ECMAScript 5**'s native `some` if available.
-  // Aliased as `any`.
-  var any = _.some = _.any = function(obj, iterator, context) {
-    iterator || (iterator = _.identity);
-    var result = false;
-    if (obj == null) return result;
-    if (nativeSome && obj.some === nativeSome) return obj.some(iterator, context);
-    each(obj, function(value, index, list) {
-      if (result || (result = iterator.call(context, value, index, list))) return breaker;
-    });
-    return !!result;
-  };
-
-  // Determine if a given value is included in the array or object using `===`.
-  // Aliased as `contains`.
-  _.include = _.contains = function(obj, target) {
-    var found = false;
-    if (obj == null) return found;
-    if (nativeIndexOf && obj.indexOf === nativeIndexOf) return obj.indexOf(target) != -1;
-    found = any(obj, function(value) {
-      return value === target;
-    });
-    return found;
-  };
-
-  // Invoke a method (with arguments) on every item in a collection.
-  _.invoke = function(obj, method) {
-    var args = slice.call(arguments, 2);
-    return _.map(obj, function(value) {
-      return (_.isFunction(method) ? method || value : value[method]).apply(value, args);
-    });
-  };
-
-  // Convenience version of a common use case of `map`: fetching a property.
-  _.pluck = function(obj, key) {
-    return _.map(obj, function(value){ return value[key]; });
-  };
-
-  // Return the maximum element or (element-based computation).
-  _.max = function(obj, iterator, context) {
-    if (!iterator && _.isArray(obj)) return Math.max.apply(Math, obj);
-    if (!iterator && _.isEmpty(obj)) return -Infinity;
-    var result = {computed : -Infinity};
-    each(obj, function(value, index, list) {
-      var computed = iterator ? iterator.call(context, value, index, list) : value;
-      computed >= result.computed && (result = {value : value, computed : computed});
-    });
-    return result.value;
-  };
-
-  // Return the minimum element (or element-based computation).
-  _.min = function(obj, iterator, context) {
-    if (!iterator && _.isArray(obj)) return Math.min.apply(Math, obj);
-    if (!iterator && _.isEmpty(obj)) return Infinity;
-    var result = {computed : Infinity};
-    each(obj, function(value, index, list) {
-      var computed = iterator ? iterator.call(context, value, index, list) : value;
-      computed < result.computed && (result = {value : value, computed : computed});
-    });
-    return result.value;
-  };
-
-  // Shuffle an array.
-  _.shuffle = function(obj) {
-    var shuffled = [], rand;
-    each(obj, function(value, index, list) {
-      if (index == 0) {
-        shuffled[0] = value;
-      } else {
-        rand = Math.floor(Math.random() * (index + 1));
-        shuffled[index] = shuffled[rand];
-        shuffled[rand] = value;
-      }
-    });
-    return shuffled;
-  };
-
-  // Sort the object's values by a criterion produced by an iterator.
-  _.sortBy = function(obj, iterator, context) {
-    return _.pluck(_.map(obj, function(value, index, list) {
-      return {
-        value : value,
-        criteria : iterator.call(context, value, index, list)
-      };
-    }).sort(function(left, right) {
-      var a = left.criteria, b = right.criteria;
-      return a < b ? -1 : a > b ? 1 : 0;
-    }), 'value');
-  };
-
-  // Groups the object's values by a criterion. Pass either a string attribute
-  // to group by, or a function that returns the criterion.
-  _.groupBy = function(obj, val) {
-    var result = {};
-    var iterator = _.isFunction(val) ? val : function(obj) { return obj[val]; };
-    each(obj, function(value, index) {
-      var key = iterator(value, index);
-      (result[key] || (result[key] = [])).push(value);
-    });
-    return result;
-  };
-
-  // Use a comparator function to figure out at what index an object should
-  // be inserted so as to maintain order. Uses binary search.
-  _.sortedIndex = function(array, obj, iterator) {
-    iterator || (iterator = _.identity);
-    var low = 0, high = array.length;
-    while (low < high) {
-      var mid = (low + high) >> 1;
-      iterator(array[mid]) < iterator(obj) ? low = mid + 1 : high = mid;
-    }
-    return low;
-  };
-
-  // Safely convert anything iterable into a real, live array.
-  _.toArray = function(iterable) {
-    if (!iterable)                return [];
-    if (iterable.toArray)         return iterable.toArray();
-    if (_.isArray(iterable))      return slice.call(iterable);
-    if (_.isArguments(iterable))  return slice.call(iterable);
-    return _.values(iterable);
-  };
-
-  // Return the number of elements in an object.
-  _.size = function(obj) {
-    return _.toArray(obj).length;
-  };
-
-  // Array Functions
-  // ---------------
-
-  // Get the first element of an array. Passing **n** will return the first N
-  // values in the array. Aliased as `head`. The **guard** check allows it to work
-  // with `_.map`.
-  _.first = _.head = function(array, n, guard) {
-    return (n != null) && !guard ? slice.call(array, 0, n) : array[0];
-  };
-
-  // Returns everything but the last entry of the array. Especcialy useful on
-  // the arguments object. Passing **n** will return all the values in
-  // the array, excluding the last N. The **guard** check allows it to work with
-  // `_.map`.
-  _.initial = function(array, n, guard) {
-    return slice.call(array, 0, array.length - ((n == null) || guard ? 1 : n));
-  };
-
-  // Get the last element of an array. Passing **n** will return the last N
-  // values in the array. The **guard** check allows it to work with `_.map`.
-  _.last = function(array, n, guard) {
-    if ((n != null) && !guard) {
-      return slice.call(array, Math.max(array.length - n, 0));
-    } else {
-      return array[array.length - 1];
-    }
-  };
-
-  // Returns everything but the first entry of the array. Aliased as `tail`.
-  // Especially useful on the arguments object. Passing an **index** will return
-  // the rest of the values in the array from that index onward. The **guard**
-  // check allows it to work with `_.map`.
-  _.rest = _.tail = function(array, index, guard) {
-    return slice.call(array, (index == null) || guard ? 1 : index);
-  };
-
-  // Trim out all falsy values from an array.
-  _.compact = function(array) {
-    return _.filter(array, function(value){ return !!value; });
-  };
-
-  // Return a completely flattened version of an array.
-  _.flatten = function(array, shallow) {
-    return _.reduce(array, function(memo, value) {
-      if (_.isArray(value)) return memo.concat(shallow ? value : _.flatten(value));
-      memo[memo.length] = value;
-      return memo;
-    }, []);
-  };
-
-  // Return a version of the array that does not contain the specified value(s).
-  _.without = function(array) {
-    return _.difference(array, slice.call(arguments, 1));
-  };
-
-  // Produce a duplicate-free version of the array. If the array has already
-  // been sorted, you have the option of using a faster algorithm.
-  // Aliased as `unique`.
-  _.uniq = _.unique = function(array, isSorted, iterator) {
-    var initial = iterator ? _.map(array, iterator) : array;
-    var result = [];
-    _.reduce(initial, function(memo, el, i) {
-      if (0 == i || (isSorted === true ? _.last(memo) != el : !_.include(memo, el))) {
-        memo[memo.length] = el;
-        result[result.length] = array[i];
-      }
-      return memo;
-    }, []);
-    return result;
-  };
-
-  // Produce an array that contains the union: each distinct element from all of
-  // the passed-in arrays.
-  _.union = function() {
-    return _.uniq(_.flatten(arguments, true));
-  };
-
-  // Produce an array that contains every item shared between all the
-  // passed-in arrays. (Aliased as "intersect" for back-compat.)
-  _.intersection = _.intersect = function(array) {
-    var rest = slice.call(arguments, 1);
-    return _.filter(_.uniq(array), function(item) {
-      return _.every(rest, function(other) {
-        return _.indexOf(other, item) >= 0;
-      });
-    });
-  };
-
-  // Take the difference between one array and a number of other arrays.
-  // Only the elements present in just the first array will remain.
-  _.difference = function(array) {
-    var rest = _.flatten(slice.call(arguments, 1));
-    return _.filter(array, function(value){ return !_.include(rest, value); });
-  };
-
-  // Zip together multiple lists into a single array -- elements that share
-  // an index go together.
-  _.zip = function() {
-    var args = slice.call(arguments);
-    var length = _.max(_.pluck(args, 'length'));
-    var results = new Array(length);
-    for (var i = 0; i < length; i++) results[i] = _.pluck(args, "" + i);
-    return results;
-  };
-
-  // If the browser doesn't supply us with indexOf (I'm looking at you, **MSIE**),
-  // we need this function. Return the position of the first occurrence of an
-  // item in an array, or -1 if the item is not included in the array.
-  // Delegates to **ECMAScript 5**'s native `indexOf` if available.
-  // If the array is large and already in sort order, pass `true`
-  // for **isSorted** to use binary search.
-  _.indexOf = function(array, item, isSorted) {
-    if (array == null) return -1;
-    var i, l;
-    if (isSorted) {
-      i = _.sortedIndex(array, item);
-      return array[i] === item ? i : -1;
-    }
-    if (nativeIndexOf && array.indexOf === nativeIndexOf) return array.indexOf(item);
-    for (i = 0, l = array.length; i < l; i++) if (i in array && array[i] === item) return i;
-    return -1;
-  };
-
-  // Delegates to **ECMAScript 5**'s native `lastIndexOf` if available.
-  _.lastIndexOf = function(array, item) {
-    if (array == null) return -1;
-    if (nativeLastIndexOf && array.lastIndexOf === nativeLastIndexOf) return array.lastIndexOf(item);
-    var i = array.length;
-    while (i--) if (i in array && array[i] === item) return i;
-    return -1;
-  };
-
-  // Generate an integer Array containing an arithmetic progression. A port of
-  // the native Python `range()` function. See
-  // [the Python documentation](http://docs.python.org/library/functions.html#range).
-  _.range = function(start, stop, step) {
-    if (arguments.length <= 1) {
-      stop = start || 0;
-      start = 0;
-    }
-    step = arguments[2] || 1;
-
-    var len = Math.max(Math.ceil((stop - start) / step), 0);
-    var idx = 0;
-    var range = new Array(len);
-
-    while(idx < len) {
-      range[idx++] = start;
-      start += step;
-    }
-
-    return range;
-  };
-
-  // Function (ahem) Functions
-  // ------------------
-
-  // Reusable constructor function for prototype setting.
-  var ctor = function(){};
-
-  // Create a function bound to a given object (assigning `this`, and arguments,
-  // optionally). Binding with arguments is also known as `curry`.
-  // Delegates to **ECMAScript 5**'s native `Function.bind` if available.
-  // We check for `func.bind` first, to fail fast when `func` is undefined.
-  _.bind = function bind(func, context) {
-    var bound, args;
-    if (func.bind === nativeBind && nativeBind) return nativeBind.apply(func, slice.call(arguments, 1));
-    if (!_.isFunction(func)) throw new TypeError;
-    args = slice.call(arguments, 2);
-    return bound = function() {
-      if (!(this instanceof bound)) return func.apply(context, args.concat(slice.call(arguments)));
-      ctor.prototype = func.prototype;
-      var self = new ctor;
-      var result = func.apply(self, args.concat(slice.call(arguments)));
-      if (Object(result) === result) return result;
-      return self;
-    };
-  };
-
-  // Bind all of an object's methods to that object. Useful for ensuring that
-  // all callbacks defined on an object belong to it.
-  _.bindAll = function(obj) {
-    var funcs = slice.call(arguments, 1);
-    if (funcs.length == 0) funcs = _.functions(obj);
-    each(funcs, function(f) { obj[f] = _.bind(obj[f], obj); });
-    return obj;
-  };
-
-  // Memoize an expensive function by storing its results.
-  _.memoize = function(func, hasher) {
-    var memo = {};
-    hasher || (hasher = _.identity);
-    return function() {
-      var key = hasher.apply(this, arguments);
-      return _.has(memo, key) ? memo[key] : (memo[key] = func.apply(this, arguments));
-    };
-  };
-
-  // Delays a function for the given number of milliseconds, and then calls
-  // it with the arguments supplied.
-  _.delay = function(func, wait) {
-    var args = slice.call(arguments, 2);
-    return setTimeout(function(){ return func.apply(func, args); }, wait);
-  };
-
-  // Defers a function, scheduling it to run after the current call stack has
-  // cleared.
-  _.defer = function(func) {
-    return _.delay.apply(_, [func, 1].concat(slice.call(arguments, 1)));
-  };
-
-  // Returns a function, that, when invoked, will only be triggered at most once
-  // during a given window of time.
-  _.throttle = function(func, wait) {
-    var context, args, timeout, throttling, more;
-    var whenDone = _.debounce(function(){ more = throttling = false; }, wait);
-    return function() {
-      context = this; args = arguments;
-      var later = function() {
-        timeout = null;
-        if (more) func.apply(context, args);
-        whenDone();
-      };
-      if (!timeout) timeout = setTimeout(later, wait);
-      if (throttling) {
-        more = true;
-      } else {
-        func.apply(context, args);
-      }
-      whenDone();
-      throttling = true;
-    };
-  };
-
-  // Returns a function, that, as long as it continues to be invoked, will not
-  // be triggered. The function will be called after it stops being called for
-  // N milliseconds.
-  _.debounce = function(func, wait) {
-    var timeout;
-    return function() {
-      var context = this, args = arguments;
-      var later = function() {
-        timeout = null;
-        func.apply(context, args);
-      };
-      clearTimeout(timeout);
-      timeout = setTimeout(later, wait);
-    };
-  };
-
-  // Returns a function that will be executed at most one time, no matter how
-  // often you call it. Useful for lazy initialization.
-  _.once = function(func) {
-    var ran = false, memo;
-    return function() {
-      if (ran) return memo;
-      ran = true;
-      return memo = func.apply(this, arguments);
-    };
-  };
-
-  // Returns the first function passed as an argument to the second,
-  // allowing you to adjust arguments, run code before and after, and
-  // conditionally execute the original function.
-  _.wrap = function(func, wrapper) {
-    return function() {
-      var args = [func].concat(slice.call(arguments, 0));
-      return wrapper.apply(this, args);
-    };
-  };
-
-  // Returns a function that is the composition of a list of functions, each
-  // consuming the return value of the function that follows.
-  _.compose = function() {
-    var funcs = arguments;
-    return function() {
-      var args = arguments;
-      for (var i = funcs.length - 1; i >= 0; i--) {
-        args = [funcs[i].apply(this, args)];
-      }
-      return args[0];
-    };
-  };
-
-  // Returns a function that will only be executed after being called N times.
-  _.after = function(times, func) {
-    if (times <= 0) return func();
-    return function() {
-      if (--times < 1) { return func.apply(this, arguments); }
-    };
-  };
-
-  // Object Functions
-  // ----------------
-
-  // Retrieve the names of an object's properties.
-  // Delegates to **ECMAScript 5**'s native `Object.keys`
-  _.keys = nativeKeys || function(obj) {
-    if (obj !== Object(obj)) throw new TypeError('Invalid object');
-    var keys = [];
-    for (var key in obj) if (_.has(obj, key)) keys[keys.length] = key;
-    return keys;
-  };
-
-  // Retrieve the values of an object's properties.
-  _.values = function(obj) {
-    return _.map(obj, _.identity);
-  };
-
-  // Return a sorted list of the function names available on the object.
-  // Aliased as `methods`
-  _.functions = _.methods = function(obj) {
-    var names = [];
-    for (var key in obj) {
-      if (_.isFunction(obj[key])) names.push(key);
-    }
-    return names.sort();
-  };
-
-  // Extend a given object with all the properties in passed-in object(s).
-  _.extend = function(obj) {
-    each(slice.call(arguments, 1), function(source) {
-      for (var prop in source) {
-        obj[prop] = source[prop];
-      }
-    });
-    return obj;
-  };
-
-  // Fill in a given object with default properties.
-  _.defaults = function(obj) {
-    each(slice.call(arguments, 1), function(source) {
-      for (var prop in source) {
-        if (obj[prop] == null) obj[prop] = source[prop];
-      }
-    });
-    return obj;
-  };
-
-  // Create a (shallow-cloned) duplicate of an object.
-  _.clone = function(obj) {
-    if (!_.isObject(obj)) return obj;
-    return _.isArray(obj) ? obj.slice() : _.extend({}, obj);
-  };
-
-  // Invokes interceptor with the obj, and then returns obj.
-  // The primary purpose of this method is to "tap into" a method chain, in
-  // order to perform operations on intermediate results within the chain.
-  _.tap = function(obj, interceptor) {
-    interceptor(obj);
-    return obj;
-  };
-
-  // Internal recursive comparison function.
-  function eq(a, b, stack) {
-    // Identical objects are equal. `0 === -0`, but they aren't identical.
-    // See the Harmony `egal` proposal: http://wiki.ecmascript.org/doku.php?id=harmony:egal.
-    if (a === b) return a !== 0 || 1 / a == 1 / b;
-    // A strict comparison is necessary because `null == undefined`.
-    if (a == null || b == null) return a === b;
-    // Unwrap any wrapped objects.
-    if (a._chain) a = a._wrapped;
-    if (b._chain) b = b._wrapped;
-    // Invoke a custom `isEqual` method if one is provided.
-    if (a.isEqual && _.isFunction(a.isEqual)) return a.isEqual(b);
-    if (b.isEqual && _.isFunction(b.isEqual)) return b.isEqual(a);
-    // Compare `[[Class]]` names.
-    var className = toString.call(a);
-    if (className != toString.call(b)) return false;
-    switch (className) {
-      // Strings, numbers, dates, and booleans are compared by value.
-      case '[object String]':
-        // Primitives and their corresponding object wrappers are equivalent; thus, `"5"` is
-        // equivalent to `new String("5")`.
-        return a == String(b);
-      case '[object Number]':
-        // `NaN`s are equivalent, but non-reflexive. An `egal` comparison is performed for
-        // other numeric values.
-        return a != +a ? b != +b : (a == 0 ? 1 / a == 1 / b : a == +b);
-      case '[object Date]':
-      case '[object Boolean]':
-        // Coerce dates and booleans to numeric primitive values. Dates are compared by their
-        // millisecond representations. Note that invalid dates with millisecond representations
-        // of `NaN` are not equivalent.
-        return +a == +b;
-      // RegExps are compared by their source patterns and flags.
-      case '[object RegExp]':
-        return a.source == b.source &&
-               a.global == b.global &&
-               a.multiline == b.multiline &&
-               a.ignoreCase == b.ignoreCase;
-    }
-    if (typeof a != 'object' || typeof b != 'object') return false;
-    // Assume equality for cyclic structures. The algorithm for detecting cyclic
-    // structures is adapted from ES 5.1 section 15.12.3, abstract operation `JO`.
-    var length = stack.length;
-    while (length--) {
-      // Linear search. Performance is inversely proportional to the number of
-      // unique nested structures.
-      if (stack[length] == a) return true;
-    }
-    // Add the first object to the stack of traversed objects.
-    stack.push(a);
-    var size = 0, result = true;
-    // Recursively compare objects and arrays.
-    if (className == '[object Array]') {
-      // Compare array lengths to determine if a deep comparison is necessary.
-      size = a.length;
-      result = size == b.length;
-      if (result) {
-        // Deep compare the contents, ignoring non-numeric properties.
-        while (size--) {
-          // Ensure commutative equality for sparse arrays.
-          if (!(result = size in a == size in b && eq(a[size], b[size], stack))) break;
-        }
-      }
-    } else {
-      // Objects with different constructors are not equivalent.
-      if ('constructor' in a != 'constructor' in b || a.constructor != b.constructor) return false;
-      // Deep compare objects.
-      for (var key in a) {
-        if (_.has(a, key)) {
-          // Count the expected number of properties.
-          size++;
-          // Deep compare each member.
-          if (!(result = _.has(b, key) && eq(a[key], b[key], stack))) break;
-        }
-      }
-      // Ensure that both objects contain the same number of properties.
-      if (result) {
-        for (key in b) {
-          if (_.has(b, key) && !(size--)) break;
-        }
-        result = !size;
-      }
-    }
-    // Remove the first object from the stack of traversed objects.
-    stack.pop();
-    return result;
-  }
-
-  // Perform a deep comparison to check if two objects are equal.
-  _.isEqual = function(a, b) {
-    return eq(a, b, []);
-  };
-
-  // Is a given array, string, or object empty?
-  // An "empty" object has no enumerable own-properties.
-  _.isEmpty = function(obj) {
-    if (_.isArray(obj) || _.isString(obj)) return obj.length === 0;
-    for (var key in obj) if (_.has(obj, key)) return false;
-    return true;
-  };
-
-  // Is a given value a DOM element?
-  _.isElement = function(obj) {
-    return !!(obj && obj.nodeType == 1);
-  };
-
-  // Is a given value an array?
-  // Delegates to ECMA5's native Array.isArray
-  _.isArray = nativeIsArray || function(obj) {
-    return toString.call(obj) == '[object Array]';
-  };
-
-  // Is a given variable an object?
-  _.isObject = function(obj) {
-    return obj === Object(obj);
-  };
-
-  // Is a given variable an arguments object?
-  _.isArguments = function(obj) {
-    return toString.call(obj) == '[object Arguments]';
-  };
-  if (!_.isArguments(arguments)) {
-    _.isArguments = function(obj) {
-      return !!(obj && _.has(obj, 'callee'));
-    };
-  }
-
-  // Is a given value a function?
-  _.isFunction = function(obj) {
-    return toString.call(obj) == '[object Function]';
-  };
-
-  // Is a given value a string?
-  _.isString = function(obj) {
-    return toString.call(obj) == '[object String]';
-  };
-
-  // Is a given value a number?
-  _.isNumber = function(obj) {
-    return toString.call(obj) == '[object Number]';
-  };
-
-  // Is the given value `NaN`?
-  _.isNaN = function(obj) {
-    // `NaN` is the only value for which `===` is not reflexive.
-    return obj !== obj;
-  };
-
-  // Is a given value a boolean?
-  _.isBoolean = function(obj) {
-    return obj === true || obj === false || toString.call(obj) == '[object Boolean]';
-  };
-
-  // Is a given value a date?
-  _.isDate = function(obj) {
-    return toString.call(obj) == '[object Date]';
-  };
-
-  // Is the given value a regular expression?
-  _.isRegExp = function(obj) {
-    return toString.call(obj) == '[object RegExp]';
-  };
-
-  // Is a given value equal to null?
-  _.isNull = function(obj) {
-    return obj === null;
-  };
-
-  // Is a given variable undefined?
-  _.isUndefined = function(obj) {
-    return obj === void 0;
-  };
-
-  // Has own property?
-  _.has = function(obj, key) {
-    return hasOwnProperty.call(obj, key);
-  };
-
-  // Utility Functions
-  // -----------------
-
-  // Run Underscore.js in *noConflict* mode, returning the `_` variable to its
-  // previous owner. Returns a reference to the Underscore object.
-  _.noConflict = function() {
-    root._ = previousUnderscore;
-    return this;
-  };
-
-  // Keep the identity function around for default iterators.
-  _.identity = function(value) {
-    return value;
-  };
-
-  // Run a function **n** times.
-  _.times = function (n, iterator, context) {
-    for (var i = 0; i < n; i++) iterator.call(context, i);
-  };
-
-  // Escape a string for HTML interpolation.
-  _.escape = function(string) {
-    return (''+string).replace(/&/g, '&amp;').replace(/</g, '&lt;').replace(/>/g, '&gt;').replace(/"/g, '&quot;').replace(/'/g, '&#x27;').replace(/\//g,'&#x2F;');
-  };
-
-  // Add your own custom functions to the Underscore object, ensuring that
-  // they're correctly added to the OOP wrapper as well.
-  _.mixin = function(obj) {
-    each(_.functions(obj), function(name){
-      addToWrapper(name, _[name] = obj[name]);
-    });
-  };
-
-  // Generate a unique integer id (unique within the entire client session).
-  // Useful for temporary DOM ids.
-  var idCounter = 0;
-  _.uniqueId = function(prefix) {
-    var id = idCounter++;
-    return prefix ? prefix + id : id;
-  };
-
-  // By default, Underscore uses ERB-style template delimiters, change the
-  // following template settings to use alternative delimiters.
-  _.templateSettings = {
-    evaluate    : /<%([\s\S]+?)%>/g,
-    interpolate : /<%=([\s\S]+?)%>/g,
-    escape      : /<%-([\s\S]+?)%>/g
-  };
-
-  // When customizing `templateSettings`, if you don't want to define an
-  // interpolation, evaluation or escaping regex, we need one that is
-  // guaranteed not to match.
-  var noMatch = /.^/;
-
-  // Within an interpolation, evaluation, or escaping, remove HTML escaping
-  // that had been previously added.
-  var unescape = function(code) {
-    return code.replace(/\\\\/g, '\\').replace(/\\'/g, "'");
-  };
-
-  // JavaScript micro-templating, similar to John Resig's implementation.
-  // Underscore templating handles arbitrary delimiters, preserves whitespace,
-  // and correctly escapes quotes within interpolated code.
-  _.template = function(str, data) {
-    var c  = _.templateSettings;
-    var tmpl = 'var __p=[],print=function(){__p.push.apply(__p,arguments);};' +
-      'with(obj||{}){__p.push(\'' +
-      str.replace(/\\/g, '\\\\')
-         .replace(/'/g, "\\'")
-         .replace(c.escape || noMatch, function(match, code) {
-           return "',_.escape(" + unescape(code) + "),'";
-         })
-         .replace(c.interpolate || noMatch, function(match, code) {
-           return "'," + unescape(code) + ",'";
-         })
-         .replace(c.evaluate || noMatch, function(match, code) {
-           return "');" + unescape(code).replace(/[\r\n\t]/g, ' ') + ";__p.push('";
-         })
-         .replace(/\r/g, '\\r')
-         .replace(/\n/g, '\\n')
-         .replace(/\t/g, '\\t')
-         + "');}return __p.join('');";
-    var func = new Function('obj', '_', tmpl);
-    if (data) return func(data, _);
-    return function(data) {
-      return func.call(this, data, _);
-    };
-  };
-
-  // Add a "chain" function, which will delegate to the wrapper.
-  _.chain = function(obj) {
-    return _(obj).chain();
-  };
-
-  // The OOP Wrapper
-  // ---------------
-
-  // If Underscore is called as a function, it returns a wrapped object that
-  // can be used OO-style. This wrapper holds altered versions of all the
-  // underscore functions. Wrapped objects may be chained.
-  var wrapper = function(obj) { this._wrapped = obj; };
-
-  // Expose `wrapper.prototype` as `_.prototype`
-  _.prototype = wrapper.prototype;
-
-  // Helper function to continue chaining intermediate results.
-  var result = function(obj, chain) {
-    return chain ? _(obj).chain() : obj;
-  };
-
-  // A method to easily add functions to the OOP wrapper.
-  var addToWrapper = function(name, func) {
-    wrapper.prototype[name] = function() {
-      var args = slice.call(arguments);
-      unshift.call(args, this._wrapped);
-      return result(func.apply(_, args), this._chain);
-    };
-  };
-
-  // Add all of the Underscore functions to the wrapper object.
-  _.mixin(_);
-
-  // Add all mutator Array functions to the wrapper.
-  each(['pop', 'push', 'reverse', 'shift', 'sort', 'splice', 'unshift'], function(name) {
-    var method = ArrayProto[name];
-    wrapper.prototype[name] = function() {
-      var wrapped = this._wrapped;
-      method.apply(wrapped, arguments);
-      var length = wrapped.length;
-      if ((name == 'shift' || name == 'splice') && length === 0) delete wrapped[0];
-      return result(wrapped, this._chain);
-    };
-  });
-
-  // Add all accessor Array functions to the wrapper.
-  each(['concat', 'join', 'slice'], function(name) {
-    var method = ArrayProto[name];
-    wrapper.prototype[name] = function() {
-      return result(method.apply(this._wrapped, arguments), this._chain);
-    };
-  });
-
-  // Start chaining a wrapped Underscore object.
-  wrapper.prototype.chain = function() {
-    this._chain = true;
-    return this;
-  };
-
-  // Extracts the result from a wrapped and chained object.
-  wrapper.prototype.value = function() {
-    return this._wrapped;
-  };
-
-}).call(this);
diff --git a/docs/api/assets/underscore.js b/docs/api/assets/underscore.js
index 5b55f32b..cf177d42 100644
--- a/docs/api/assets/underscore.js
+++ b/docs/api/assets/underscore.js
@@ -1,31 +1,6 @@
-// Underscore.js 1.3.1
-// (c) 2009-2012 Jeremy Ashkenas, DocumentCloud Inc.
-// Underscore is freely distributable under the MIT license.
-// Portions of Underscore are inspired or borrowed from Prototype,
-// Oliver Steele's Functional, and John Resig's Micro-Templating.
-// For all details and documentation:
-// http://documentcloud.github.com/underscore
-(function(){function q(a,c,d){if(a===c)return a!==0||1/a==1/c;if(a==null||c==null)return a===c;if(a._chain)a=a._wrapped;if(c._chain)c=c._wrapped;if(a.isEqual&&b.isFunction(a.isEqual))return a.isEqual(c);if(c.isEqual&&b.isFunction(c.isEqual))return c.isEqual(a);var e=l.call(a);if(e!=l.call(c))return false;switch(e){case "[object String]":return a==String(c);case "[object Number]":return a!=+a?c!=+c:a==0?1/a==1/c:a==+c;case "[object Date]":case "[object Boolean]":return+a==+c;case "[object RegExp]":return a.source==
-c.source&&a.global==c.global&&a.multiline==c.multiline&&a.ignoreCase==c.ignoreCase}if(typeof a!="object"||typeof c!="object")return false;for(var f=d.length;f--;)if(d[f]==a)return true;d.push(a);var f=0,g=true;if(e=="[object Array]"){if(f=a.length,g=f==c.length)for(;f--;)if(!(g=f in a==f in c&&q(a[f],c[f],d)))break}else{if("constructor"in a!="constructor"in c||a.constructor!=c.constructor)return false;for(var h in a)if(b.has(a,h)&&(f++,!(g=b.has(c,h)&&q(a[h],c[h],d))))break;if(g){for(h in c)if(b.has(c,
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   <p># CHANGELOG</p>
 <p>This is a manually generated log to track changes to the repository for each release.
 Each section should include general headers such as <strong>Implemented enhancements</strong>
@@ -159,157 +74,143 @@
 Critical items to know are:</p>
 <blockquote>
 <div><ul class="simple">
-<li><p>renamed commands</p></li>
-<li><p>deprecated / removed commands</p></li>
-<li><p>changed defaults</p></li>
-<li><p>backward incompatible changes (recipe or image file format?)</p></li>
-<li><p>migration guidance (how to convert images?)</p></li>
-<li><p>changed behaviour (recipe sections work differently)</p></li>
+<li>renamed commands</li>
+<li>deprecated / removed commands</li>
+<li>changed defaults</li>
+<li>backward incompatible changes (recipe or image file format?)</li>
+<li>migration guidance (how to convert images?)</li>
+<li>changed behaviour (recipe sections work differently)</li>
 </ul>
 </div></blockquote>
 <p>The client here will eventually be released as “spython” (and eventually to
 singularity on pypi), and the versions here will coincide with these releases.</p>
-<dl>
+<dl class="docutils">
 <dt>## [master](<a class="reference external" href="https://github.com/singularityhub/singularity-cli/tree/master">https://github.com/singularityhub/singularity-cli/tree/master</a>)</dt><dd><ul class="simple">
-<li><p>instance list doesn’t always include container_image (0.1.0)</p></li>
-<li><p>add sudo_options option to Instance.start/stop and Client.execute (0.0.85)
-- add environ option to Instance.start and Client.execute for passing env variables</p></li>
-<li><p>Small bugfix for docker writer and adding pyflakes for unused imports (0.0.84)</p></li>
-<li><p>Adding support for multistage build parsing (0.0.83)</p></li>
-<li><p>Singularity Python does not yet support multistage builds (0.0.82)</p></li>
-<li><p>stream command should print to stdout given CalledProcessError (0.0.81)</p></li>
-<li><p>USER regular expression should check for USER at start of line (0.0.80)</p></li>
-<li><p>add singularity options parameters to send to singularity (0.0.79)</p></li>
-<li><p>add support for library:// urls (0.0.78)</p></li>
-<li><p>instance stop with timeout argument (0.0.77)</p></li>
-<li><p>instance list includes ip address (0.0.76)</p></li>
-<li><p>export lines aren’t ignored from environment, but replaced (0.0.75)</p></li>
-<li><p>instance logging functions for Singularity 3.5 and up (0.0.74)</p></li>
-<li><p>add sudo_options option to spython.main.Client.build (0.0.73)</p></li>
-<li><p>list of options and writable added to shell, execute, and run (0.0.72)</p></li>
-<li><p>client is not honoring quiet for pull (0.0.71)</p></li>
-<li><p>removing debugging line in pull (0.0.70)</p></li>
-<li><p>adding quiet argument to build to override client (0.0.69)</p></li>
-<li><p>adding additional options to build to support singularity-compose (0.0.68)</p></li>
-<li><p>client should support shell (0.0.67)</p></li>
-<li><p>adding test for entrypoint + cmd and fixing testing requirements (0.0.66)</p></li>
-<li><p>fixing bug that inspect does not honor quiet (0.0.65)</p></li>
-<li><p>refactor recipe parsers, writers, and base (0.0.64)
-- paths for files, add, copy, will not be expanded as it adds hardcoded paths</p></li>
-<li><p>oci state fixes and added Client.version_info() (0.0.63)</p></li>
-<li><p>fix crash in some error conditions (0.0.62)
-- more OCI commands accept sudo parameter</p></li>
-<li><p>working directory, the last one defined, should be added to runscript (0.0.61)</p></li>
-<li><p>adding deprecation message for image.export (0.0.60)
-- adding –force option to build</p></li>
-<li><p>fixing warning for files, only relevant for sources (0.0.59)</p></li>
-<li><p>deprecating pulling by commit or hash, not supported for Singularity (0.0.58)
-- export command added back, points to build given Singularity 3.x+</p></li>
-<li><p>print but with logger, should be println (0.0.57)</p></li>
-<li><p>Fixing bug with instance not having name when not started (0.0.56)
-- instance start has been moved to non-private</p></li>
-<li><p>Added ability for exec and run to return the full output and message (0.0.55)</p></li>
+<li>version checks removed to support Singularity 3.x and above (0.2.0)</li>
+<li>adding support for SIF (oras pull) (0.1.18)</li>
+<li>updating CI/tests and fixing deprecations (warnings) (0.1.17)</li>
+<li>fixing bug with defining comments earlier (0.1.16)</li>
+<li>ensure options and args from instance init are honored (0.1.15)</li>
+<li>choose output for stream_command (0.1.14)</li>
+<li>adding support to pull from a url (0.1.13)</li>
+<li>add more verbosity to instance start/stop (0.1.12)</li>
+<li>adding more verbosity to running commands (0.1.11)</li>
+<li>log error paths are optional (0.1.1)</li>
+<li>instance list doesn’t always include container_image (0.1.0)</li>
+<li>add sudo_options option to Instance.start/stop and Client.execute (0.0.85)
+- add environ option to Instance.start and Client.execute for passing env variables</li>
+<li>Small bugfix for docker writer and adding pyflakes for unused imports (0.0.84)</li>
+<li>Adding support for multistage build parsing (0.0.83)</li>
+<li>Singularity Python does not yet support multistage builds (0.0.82)</li>
+<li>stream command should print to stdout given CalledProcessError (0.0.81)</li>
+<li>USER regular expression should check for USER at start of line (0.0.80)</li>
+<li>add singularity options parameters to send to singularity (0.0.79)</li>
+<li>add support for library:// urls (0.0.78)</li>
+<li>instance stop with timeout argument (0.0.77)</li>
+<li>instance list includes ip address (0.0.76)</li>
+<li>export lines aren’t ignored from environment, but replaced (0.0.75)</li>
+<li>instance logging functions for Singularity 3.5 and up (0.0.74)</li>
+<li>add sudo_options option to spython.main.Client.build (0.0.73)</li>
+<li>list of options and writable added to shell, execute, and run (0.0.72)</li>
+<li>client is not honoring quiet for pull (0.0.71)</li>
+<li>removing debugging line in pull (0.0.70)</li>
+<li>adding quiet argument to build to override client (0.0.69)</li>
+<li>adding additional options to build to support singularity-compose (0.0.68)</li>
+<li>client should support shell (0.0.67)</li>
+<li>adding test for entrypoint + cmd and fixing testing requirements (0.0.66)</li>
+<li>fixing bug that inspect does not honor quiet (0.0.65)</li>
+<li>refactor recipe parsers, writers, and base (0.0.64)
+- paths for files, add, copy, will not be expanded as it adds hardcoded paths</li>
+<li>oci state fixes and added Client.version_info() (0.0.63)</li>
+<li>fix crash in some error conditions (0.0.62)
+- more OCI commands accept sudo parameter</li>
+<li>working directory, the last one defined, should be added to runscript (0.0.61)</li>
+<li>adding deprecation message for image.export (0.0.60)
+- adding –force option to build</li>
+<li>fixing warning for files, only relevant for sources (0.0.59)</li>
+<li>deprecating pulling by commit or hash, not supported for Singularity (0.0.58)
+- export command added back, points to build given Singularity 3.x+</li>
+<li>print but with logger, should be println (0.0.57)</li>
+<li>Fixing bug with instance not having name when not started (0.0.56)
+- instance start has been moved to non-private</li>
+<li>Added ability for exec and run to return the full output and message (0.0.55)</li>
 </ul>
 <blockquote>
 <div><ul class="simple">
-<li><p>By default, oci commands (pause, resume, kill) return the return value</p></li>
+<li>By default, oci commands (pause, resume, kill) return the return value</li>
 </ul>
 </div></blockquote>
 <ul class="simple">
-<li><p>Added support and tests for OCI image command group (0.0.54)
+<li>Added support and tests for OCI image command group (0.0.54)
 - client now has version() function to call get_singularity_version
-- added return_result (boolean) to client run_command function.</p></li>
-<li><p>adding testing for 3.1.0 with Singularity Orbs (0.0.53)
-- inspect returns parsed json on success, or full message / return code otherwise</p></li>
-<li><p>instance stop all missing check for Singularity V3.+ (0.0.52)</p></li>
-<li><p>fixing bug with instances list, name not taken into account (0.0.51)</p></li>
-<li><p>additional of args to instance start commands (0.0.50)</p></li>
-<li><p>continued lines should not be split in docker.py recipe parser (_setup) (0.0.49)</p></li>
-<li><p>COPY command should honor src src dest (and not reverse) (0.0.48)</p></li>
-<li><p>adding support for instance list (0.0.47)</p></li>
-<li><p>ENV variables in Dockerfile can be empty (like unsetting) (0.0.46)</p></li>
-<li><p>COPY can handle multiple sources to one destination for Dockerfile parser (0.0.45)
-- Adding DockerRecipe, SingularityRecipe “load” action to load file</p></li>
-<li><p>issue #64 bug with hanging instances (0.0.44)</p></li>
-<li><p>flexible error printing given command to terminal fails (0.0.43)</p></li>
-<li><p>adding name_by_commit and name_by_hash to pull (0.0.42)</p></li>
-<li><p>adding nvidia flag as nv argument (with default False) to run/exec (0.0.41)</p></li>
-<li><p>fixing bug in shell.py, cli should be client (0.0.40)</p></li>
-<li><p>remove uri function should only right strip to support relative paths (0.0.39)</p></li>
-<li><p>adjusting container build to use correct Github branch (vault/release-2.5)</p></li>
-<li><p>adding support and documentation for container instances (0.0.38)</p></li>
-<li><p>fixing bug with recipe Dockerfile conversion (0.0.37)</p></li>
-<li><p>typo in pypi PACKAGE_URL (0.0.36)</p></li>
-<li><p>respecting Client “quiet” attribute in run_command  (0.0.34/0.0.35)</p></li>
-<li><p>adding missing import of tempfile in image.export (0.0.33)</p></li>
-<li><p>bug with Client.version() (0.0.32)</p></li>
-<li><p>fixing bugs with import, export, image commands (0.0.31)</p></li>
-<li><p>adding tests for client (0.0.30)</p></li>
-<li><p>bug in Dockerfile fromHeader variable fix (0.0.29)</p></li>
-<li><p>Dockerfile from “as level” removed (0.0.28)
-- fixed ENV parser to handle statements like A=B C=D</p></li>
-<li><p>adding ability to stream command executed to console (0.0.25)</p></li>
-<li><p>fixing import bug with recipe parsers in python 2.7 (0.0.24)</p></li>
-<li><p>addition of docker and singularity recipe parsers (0.0.22)</p></li>
-<li><p>adding bind argument to exec and run (0.0.21)</p></li>
-<li><p>generating basic api documentation (sphinx) (0.0.2)</p></li>
-<li><p>adding changelog, and original code for client  (0.0.1)</p></li>
+- added return_result (boolean) to client run_command function.</li>
+<li>adding testing for 3.1.0 with Singularity Orbs (0.0.53)
+- inspect returns parsed json on success, or full message / return code otherwise</li>
+<li>instance stop all missing check for Singularity V3.+ (0.0.52)</li>
+<li>fixing bug with instances list, name not taken into account (0.0.51)</li>
+<li>additional of args to instance start commands (0.0.50)</li>
+<li>continued lines should not be split in docker.py recipe parser (_setup) (0.0.49)</li>
+<li>COPY command should honor src src dest (and not reverse) (0.0.48)</li>
+<li>adding support for instance list (0.0.47)</li>
+<li>ENV variables in Dockerfile can be empty (like unsetting) (0.0.46)</li>
+<li>COPY can handle multiple sources to one destination for Dockerfile parser (0.0.45)
+- Adding DockerRecipe, SingularityRecipe “load” action to load file</li>
+<li>issue #64 bug with hanging instances (0.0.44)</li>
+<li>flexible error printing given command to terminal fails (0.0.43)</li>
+<li>adding name_by_commit and name_by_hash to pull (0.0.42)</li>
+<li>adding nvidia flag as nv argument (with default False) to run/exec (0.0.41)</li>
+<li>fixing bug in shell.py, cli should be client (0.0.40)</li>
+<li>remove uri function should only right strip to support relative paths (0.0.39)</li>
+<li>adjusting container build to use correct Github branch (vault/release-2.5)</li>
+<li>adding support and documentation for container instances (0.0.38)</li>
+<li>fixing bug with recipe Dockerfile conversion (0.0.37)</li>
+<li>typo in pypi PACKAGE_URL (0.0.36)</li>
+<li>respecting Client “quiet” attribute in run_command  (0.0.34/0.0.35)</li>
+<li>adding missing import of tempfile in image.export (0.0.33)</li>
+<li>bug with Client.version() (0.0.32)</li>
+<li>fixing bugs with import, export, image commands (0.0.31)</li>
+<li>adding tests for client (0.0.30)</li>
+<li>bug in Dockerfile fromHeader variable fix (0.0.29)</li>
+<li>Dockerfile from “as level” removed (0.0.28)
+- fixed ENV parser to handle statements like A=B C=D</li>
+<li>adding ability to stream command executed to console (0.0.25)</li>
+<li>fixing import bug with recipe parsers in python 2.7 (0.0.24)</li>
+<li>addition of docker and singularity recipe parsers (0.0.22)</li>
+<li>adding bind argument to exec and run (0.0.21)</li>
+<li>generating basic api documentation (sphinx) (0.0.2)</li>
+<li>adding changelog, and original code for client  (0.0.1)</li>
 </ul>
 </dd>
 </dl>
 
 
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diff --git a/docs/api/genindex.html b/docs/api/genindex.html
index 8f62e907..a65fe7be 100644
--- a/docs/api/genindex.html
+++ b/docs/api/genindex.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>Index &mdash; Singularity Python API 1 documentation</title>
-  
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-  <link rel="stylesheet" href="assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="assets/pygments.css" type="text/css" />
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+      <link rel="stylesheet" href="assets/pygments.css" type="text/css" />
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+        <script data-url_root="./" id="documentation_options" src="assets/documentation_options.js"></script>
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+    <script src="assets/js/theme.js"></script>
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+            <a href="index.html" class="icon icon-home"> Singularity Python API
           </a>
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   <ul class="wy-breadcrumbs">
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           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
 
 <h1 id="index">Index</h1>
 
@@ -218,18 +134,12 @@ <h2 id="C">C</h2>
       <li><a href="source/spython.logger.html#spython.logger.spinner.Spinner.changing_arrows">changing_arrows() (spython.logger.spinner.Spinner static method)</a>
 </li>
       <li><a href="source/spython.utils.html#spython.utils.terminal.check_install">check_install() (in module spython.utils.terminal)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_instances.TestInstanceFuncs.cleanup">cleanup() (spython.tests.test_instances.TestInstanceFuncs method)</a>
 </li>
       <li><a href="source/spython.main.base.html#spython.main.base.Client">Client (class in spython.main.base)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="source/spython.image.cmd.html#spython.image.cmd.utils.compress">compress() (in module spython.image.cmd.utils)</a>
-</li>
       <li><a href="source/spython.logger.html#spython.logger.message.convert2boolean">convert2boolean() (in module spython.logger.message)</a>
-</li>
-      <li><a href="source/spython.image.cmd.html#spython.image.cmd.create.create">create() (in module spython.image.cmd.create)</a>
 </li>
       <li><a href="source/spython.logger.html#spython.logger.message.SingularityMessage.critical">critical() (spython.logger.message.SingularityMessage method)</a>
 </li>
@@ -247,11 +157,9 @@ <h2 id="D">D</h2>
         <li><a href="source/spython.main.base.html#spython.main.base.Client.debug">(spython.main.base.Client attribute)</a>
 </li>
       </ul></li>
-      <li><a href="source/spython.logger.html#spython.logger.message.SingularityMessage.debug">debug() (spython.logger.message.SingularityMessage method)</a>
-</li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="source/spython.image.cmd.html#spython.image.cmd.utils.decompress">decompress() (in module spython.image.cmd.utils)</a>
+      <li><a href="source/spython.logger.html#spython.logger.message.SingularityMessage.debug">debug() (spython.logger.message.SingularityMessage method)</a>
 </li>
       <li><a href="source/spython.logger.html#spython.logger.spinner.Spinner.delay">delay (spython.logger.spinner.Spinner attribute)</a>
 </li>
@@ -270,11 +178,11 @@ <h2 id="E">E</h2>
       <li><a href="source/spython.logger.html#spython.logger.message.SingularityMessage.emitOutput">emitOutput() (spython.logger.message.SingularityMessage method)</a>
 </li>
       <li><a href="source/spython.logger.html#spython.logger.message.SingularityMessage.error">error() (spython.logger.message.SingularityMessage method)</a>
-</li>
-      <li><a href="source/spython.instance.html#spython.instance.Instance.error_logs">error_logs() (spython.instance.Instance method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/spython.instance.html#spython.instance.Instance.error_logs">error_logs() (spython.instance.Instance method)</a>
+</li>
       <li><a href="source/spython.main.html#spython.main.execute.execute">execute() (in module spython.main.execute)</a>
 
       <ul>
@@ -283,12 +191,8 @@ <h2 id="E">E</h2>
       </ul></li>
       <li><a href="source/spython.logger.html#spython.logger.message.SingularityMessage.exit">exit() (spython.logger.message.SingularityMessage method)</a>
 </li>
-      <li><a href="source/spython.image.cmd.html#spython.image.cmd.export.export">export() (in module spython.image.cmd.export)</a>
-
-      <ul>
-        <li><a href="source/spython.main.base.html#spython.main.base.Client.export">(spython.main.base.Client method)</a>
+      <li><a href="source/spython.main.base.html#spython.main.base.Client.export">export() (spython.main.base.Client method)</a>
 </li>
-      </ul></li>
   </ul></td>
 </tr></table>
 
@@ -310,14 +214,10 @@ <h2 id="G">G</h2>
       <li><a href="source/spython.main.base.html#spython.main.base.generate.RobotNamer.generate">generate() (spython.main.base.generate.RobotNamer method)</a>
 </li>
       <li><a href="source/spython.main.base.html#spython.main.base.command.generate_bind_list">generate_bind_list() (in module spython.main.base.command)</a>
-</li>
-      <li><a href="source/spython.image.cmd.html#spython.image.cmd.generate_image_commands">generate_image_commands() (in module spython.image.cmd)</a>
 </li>
       <li><a href="source/spython.instance.cmd.html#spython.instance.cmd.generate_instance_commands">generate_instance_commands() (in module spython.instance.cmd)</a>
 </li>
       <li><a href="source/spython.instance.html#spython.instance.Instance.generate_name">generate_name() (spython.instance.Instance method)</a>
-</li>
-      <li><a href="source/spython.instance.cmd.html#spython.instance.cmd.iutils.get">get() (in module spython.instance.cmd.iutils)</a>
 </li>
       <li><a href="source/spython.main.html#spython.main.get_client">get_client() (in module spython.main)</a>
 </li>
@@ -327,10 +227,10 @@ <h2 id="G">G</h2>
 </li>
       <li><a href="source/spython.utils.html#spython.utils.terminal.get_installdir">get_installdir() (in module spython.utils.terminal)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="source/spython.logger.html#spython.logger.message.get_logging_level">get_logging_level() (in module spython.logger.message)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="source/spython.logger.html#spython.logger.message.SingularityMessage.get_logs">get_logs() (spython.logger.message.SingularityMessage method)</a>
 </li>
       <li><a href="source/spython.client.html#spython.client.get_parser">get_parser() (in module spython.client)</a>
@@ -370,12 +270,8 @@ <h2 id="I">I</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="source/spython.image.html#spython.image.Image">Image (class in spython.image)</a>
-</li>
-      <li><a href="source/spython.main.base.html#spython.main.base.Client.image">image (spython.main.base.Client attribute)</a>
 </li>
       <li><a href="source/spython.image.html#spython.image.ImageBase">ImageBase (class in spython.image)</a>
-</li>
-      <li><a href="source/spython.image.cmd.html#spython.image.cmd.importcmd.importcmd">importcmd() (in module spython.image.cmd.importcmd)</a>
 </li>
       <li><a href="source/spython.logger.html#spython.logger.message.SingularityMessage.info">info() (spython.logger.message.SingularityMessage method)</a>
 </li>
@@ -470,22 +366,10 @@ <h2 id="M">M</h2>
         <li><a href="source/spython.client.html#module-spython.client.test">spython.client.test</a>
 </li>
         <li><a href="source/spython.image.html#module-spython.image">spython.image</a>
-</li>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd">spython.image.cmd</a>
-</li>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd.create">spython.image.cmd.create</a>
-</li>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd.export">spython.image.cmd.export</a>
-</li>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd.importcmd">spython.image.cmd.importcmd</a>
-</li>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd.utils">spython.image.cmd.utils</a>
 </li>
         <li><a href="source/spython.instance.html#module-spython.instance">spython.instance</a>
 </li>
         <li><a href="source/spython.instance.cmd.html#module-spython.instance.cmd">spython.instance.cmd</a>
-</li>
-        <li><a href="source/spython.instance.cmd.html#module-spython.instance.cmd.iutils">spython.instance.cmd.iutils</a>
 </li>
         <li><a href="source/spython.instance.cmd.html#module-spython.instance.cmd.start">spython.instance.cmd.start</a>
 </li>
@@ -534,12 +418,6 @@ <h2 id="M">M</h2>
         <li><a href="source/spython.main.html#module-spython.main.run">spython.main.run</a>
 </li>
         <li><a href="source/spython.tests.html#module-spython.tests">spython.tests</a>
-</li>
-        <li><a href="source/spython.tests.html#module-spython.tests.test_client">spython.tests.test_client</a>
-</li>
-        <li><a href="source/spython.tests.html#module-spython.tests.test_instances">spython.tests.test_instances</a>
-</li>
-        <li><a href="source/spython.tests.html#module-spython.tests.test_utils">spython.tests.test_utils</a>
 </li>
         <li><a href="source/spython.utils.html#module-spython.utils">spython.utils</a>
 </li>
@@ -583,8 +461,6 @@ <h2 id="P">P</h2>
 </li>
       </ul></li>
       <li><a href="source/spython.main.html#spython.main.inspect.parse_labels">parse_labels() (in module spython.main.inspect)</a>
-</li>
-      <li><a href="source/spython.instance.cmd.html#spython.instance.cmd.iutils.parse_table">parse_table() (in module spython.instance.cmd.iutils)</a>
 </li>
       <li><a href="source/spython.main.base.html#spython.main.base.flags.parse_verbosity">parse_verbosity() (in module spython.main.base.flags)</a>
 </li>
@@ -746,41 +622,6 @@ <h2 id="S">S</h2>
 
       <ul>
         <li><a href="source/spython.image.html#module-spython.image">module</a>
-</li>
-      </ul></li>
-      <li>
-    spython.image.cmd
-
-      <ul>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd">module</a>
-</li>
-      </ul></li>
-      <li>
-    spython.image.cmd.create
-
-      <ul>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd.create">module</a>
-</li>
-      </ul></li>
-      <li>
-    spython.image.cmd.export
-
-      <ul>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd.export">module</a>
-</li>
-      </ul></li>
-      <li>
-    spython.image.cmd.importcmd
-
-      <ul>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd.importcmd">module</a>
-</li>
-      </ul></li>
-      <li>
-    spython.image.cmd.utils
-
-      <ul>
-        <li><a href="source/spython.image.cmd.html#module-spython.image.cmd.utils">module</a>
 </li>
       </ul></li>
       <li>
@@ -795,13 +636,6 @@ <h2 id="S">S</h2>
 
       <ul>
         <li><a href="source/spython.instance.cmd.html#module-spython.instance.cmd">module</a>
-</li>
-      </ul></li>
-      <li>
-    spython.instance.cmd.iutils
-
-      <ul>
-        <li><a href="source/spython.instance.cmd.html#module-spython.instance.cmd.iutils">module</a>
 </li>
       </ul></li>
       <li>
@@ -853,8 +687,6 @@ <h2 id="S">S</h2>
         <li><a href="source/spython.main.html#module-spython.main">module</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li>
     spython.main.apps
 
@@ -862,6 +694,8 @@ <h2 id="S">S</h2>
         <li><a href="source/spython.main.html#module-spython.main.apps">module</a>
 </li>
       </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li>
     spython.main.base
 
@@ -972,27 +806,6 @@ <h2 id="S">S</h2>
 
       <ul>
         <li><a href="source/spython.tests.html#module-spython.tests">module</a>
-</li>
-      </ul></li>
-      <li>
-    spython.tests.test_client
-
-      <ul>
-        <li><a href="source/spython.tests.html#module-spython.tests.test_client">module</a>
-</li>
-      </ul></li>
-      <li>
-    spython.tests.test_instances
-
-      <ul>
-        <li><a href="source/spython.tests.html#module-spython.tests.test_instances">module</a>
-</li>
-      </ul></li>
-      <li>
-    spython.tests.test_utils
-
-      <ul>
-        <li><a href="source/spython.tests.html#module-spython.tests.test_utils">module</a>
 </li>
       </ul></li>
       <li>
@@ -1050,52 +863,6 @@ <h2 id="T">T</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="source/spython.logger.html#spython.logger.message.SingularityMessage.table">table() (spython.logger.message.SingularityMessage method)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_client.test_build_from_docker">test_build_from_docker() (in module spython.tests.test_client)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_check_get_singularity_version">test_check_get_singularity_version() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_check_get_singularity_version_info">test_check_get_singularity_version_info() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_check_install">test_check_install() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_decode">test_decode() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_client.test_docker_pull">test_docker_pull() (in module spython.tests.test_client)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_client.test_execute">test_execute() (in module spython.tests.test_client)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_client.test_execute_with_called_process_error">test_execute_with_called_process_error() (in module spython.tests.test_client)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_client.test_execute_with_return_code">test_execute_with_return_code() (in module spython.tests.test_client)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_client.test_export">test_export() (in module spython.tests.test_client)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_get_installdir">test_get_installdir() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_instances.test_has_no_instances">test_has_no_instances() (in module spython.tests.test_instances)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_client.test_inspect">test_inspect() (in module spython.tests.test_client)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_instances.test_instance_class">test_instance_class() (in module spython.tests.test_instances)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_instances.TestInstanceFuncs.test_instance_cmds">test_instance_cmds() (spython.tests.test_instances.TestInstanceFuncs method)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_remove_uri">test_remove_uri() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_ScopedEnvVar">test_ScopedEnvVar() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_split_uri">test_split_uri() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_write_bad_json">test_write_bad_json() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_write_json">test_write_json() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_utils.test_write_read_files">test_write_read_files() (in module spython.tests.test_utils)</a>
-</li>
-      <li><a href="source/spython.tests.html#spython.tests.test_instances.TestInstanceFuncs">TestInstanceFuncs (class in spython.tests.test_instances)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -1155,49 +922,30 @@ <h2 id="W">W</h2>
 
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
-
     </section>
-
   </div>
-  
-
-  <script type="text/javascript">
+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
-  </script>
-
-  
-  
-    
-   
+  </script> 
 
 </body>
 </html>
\ No newline at end of file
diff --git a/docs/api/index.html b/docs/api/index.html
index cfe4cbcb..03ea807d 100644
--- a/docs/api/index.html
+++ b/docs/api/index.html
@@ -1,70 +1,35 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>Welcome to Singularity Python API’s documentation! &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
-  
+      <link rel="stylesheet" href="assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="./" src="assets/documentation_options.js"></script>
+        <script data-url_root="./" id="documentation_options" src="assets/documentation_options.js"></script>
         <script src="assets/jquery.js"></script>
         <script src="assets/underscore.js"></script>
         <script src="assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="assets/js/theme.js"></script>
-
-    
+    <script src="assets/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="spython package" href="source/spython.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="#" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="#" class="icon icon-home"> Singularity Python API
           </a>
-
-          
-            
-            
               <div class="version">
                 0.0
               </div>
-            
-          
-
-          
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -72,87 +37,37 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
-          
-        </div>
-
-        
-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-          
-            
-            
-              
-            
-            
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="source/spython.html">spython package</a></li>
 </ul>
 
-            
-          
         </div>
-        
       </div>
     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
-
-      
-      <nav class="wy-nav-top" aria-label="top navigation">
-        
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
           <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
           <a href="#">Singularity Python API</a>
-        
       </nav>
 
-
       <div class="wy-nav-content">
-        
         <div class="rst-content">
-        
-          
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-
-
-
-
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-
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-
-
-
-
-
-
-<div role="navigation" aria-label="breadcrumbs navigation">
-
+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="#" class="icon icon-home"></a> &raquo;</li>
-        
       <li>Welcome to Singularity Python API’s documentation!</li>
-    
-    
       <li class="wy-breadcrumbs-aside">
-        
-            
             <a href="_sources/index.rst.txt" rel="nofollow"> View page source</a>
-          
-        
       </li>
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   </ul>
-
-  
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <div class="section" id="welcome-to-singularity-python-api-s-documentation">
-<h1>Welcome to Singularity Python API’s documentation!<a class="headerlink" href="#welcome-to-singularity-python-api-s-documentation" title="Permalink to this headline">¶</a></h1>
+<h1>Welcome to Singularity Python API’s documentation!<a class="headerlink" href="#welcome-to-singularity-python-api-s-documentation" title="Permalink to this headline"></a></h1>
 <p>Singularity Python is the Python API for working with Singularity containers. The module is licensed
 under the MPL 2.0 LICENSE.</p>
 <p>Contents:</p>
@@ -176,65 +91,41 @@ <h1>Welcome to Singularity Python API’s documentation!<a class="headerlink" hr
 </ul>
 </div>
 <div class="section" id="indices-and-tables">
-<h2>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this headline">¶</a></h2>
+<h2>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this headline"></a></h2>
 <ul class="simple">
-<li><p><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li>
+<li><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></li>
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-  
 
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   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
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-    
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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diff --git a/docs/api/modules/index.html b/docs/api/modules/index.html
index d20d3e79..b505e24d 100644
--- a/docs/api/modules/index.html
+++ b/docs/api/modules/index.html
@@ -1,69 +1,34 @@
-
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+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>Overview: module code &mdash; Singularity Python API 1 documentation</title>
-  
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-  <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
-
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+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
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+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
         <script src="../assets/jquery.js"></script>
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-
-    
+    <script src="../assets/js/theme.js"></script>
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     <link rel="search" title="Search" href="../search.html" /> 
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-<body class="wy-body-for-nav">
-
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+<body class="wy-body-for-nav"> 
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+            <a href="../index.html" class="icon icon-home"> Singularity Python API
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   </form>
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       </nav>
 
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       <div class="wy-nav-content">
-        
         <div class="rst-content">
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-
-
-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../index.html" class="icon icon-home"></a> &raquo;</li>
-        
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       <li class="wy-breadcrumbs-aside">
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-
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>All modules for which code is available</h1>
 <ul><li><a href="spython/client.html">spython.client</a></li>
 <ul><li><a href="spython/client/recipe.html">spython.client.recipe</a></li>
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-<li><a href="spython/image/cmd/export.html">spython.image.cmd.export</a></li>
-<li><a href="spython/image/cmd/importcmd.html">spython.image.cmd.importcmd</a></li>
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-</ul></ul><li><a href="spython/instance.html">spython.instance</a></li>
+<li><a href="spython/instance.html">spython.instance</a></li>
 <ul><li><a href="spython/instance/cmd.html">spython.instance.cmd</a></li>
-<ul><li><a href="spython/instance/cmd/iutils.html">spython.instance.cmd.iutils</a></li>
-<li><a href="spython/instance/cmd/logs.html">spython.instance.cmd.logs</a></li>
-<li><a href="spython/instance/cmd/start.html">spython.instance.cmd.start</a></li>
+<ul><li><a href="spython/instance/cmd/start.html">spython.instance.cmd.start</a></li>
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 <li><a href="spython/main/execute.html">spython.main.execute</a></li>
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-<li><a href="spython/utils/fileio.html">spython.utils.fileio</a></li>
+</ul><li><a href="spython/utils/fileio.html">spython.utils.fileio</a></li>
 <li><a href="spython/utils/terminal.html">spython.utils.terminal</a></li>
 </ul>
 
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-           
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           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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diff --git a/docs/api/modules/spython/client.html b/docs/api/modules/spython/client.html
index d7c76e01..842693e0 100644
--- a/docs/api/modules/spython/client.html
+++ b/docs/api/modules/spython/client.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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-  <link rel="stylesheet" href="../../assets/pygments.css" type="text/css" />
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+        <script data-url_root="../../" id="documentation_options" src="../../assets/documentation_options.js"></script>
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
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       <li><a href="../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
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-        
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
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-            
+             
   <h1>Source code for spython.client</h1><div class="highlight"><pre>
 <span></span><span class="ch">#!/usr/bin/env python</span>
 
-<span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -352,49 +269,30 @@ <h1>Source code for spython.client</h1><div class="highlight"><pre>
 </pre></div>
 
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-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
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-    
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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diff --git a/docs/api/modules/spython/client/recipe.html b/docs/api/modules/spython/client/recipe.html
index bf0e2cef..617d71de 100644
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+++ b/docs/api/modules/spython/client/recipe.html
@@ -1,69 +1,34 @@
-
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 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
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-  <meta charset="utf-8">
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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-  
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+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+  <meta charset="utf-8" />
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
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-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
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-           
           </div>
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-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
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+          <div role="navigation" aria-label="Page navigation">
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-        
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            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.client.test</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -165,49 +81,30 @@ <h1>Source code for spython.client.test</h1><div class="highlight"><pre>
 </pre></div>
 
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-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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+++ b/docs/api/modules/spython/image.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
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+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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-  <link rel="stylesheet" href="../../assets/pygments.css" type="text/css" />
-
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+      <link rel="stylesheet" href="../../assets/pygments.css" type="text/css" />
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+        <script data-url_root="../../" id="documentation_options" src="../../assets/documentation_options.js"></script>
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+<body class="wy-body-for-nav"> 
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+            <a href="../../index.html" class="icon icon-home"> Singularity Python API
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
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-        
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-
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   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.image</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -161,7 +78,7 @@ <h1>Source code for spython.image</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">split_uri</span>
 
 
-<div class="viewcode-block" id="ImageBase"><a class="viewcode-back" href="../../source/spython.image.html#spython.image.ImageBase">[docs]</a><span class="k">class</span> <span class="nc">ImageBase</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<div class="viewcode-block" id="ImageBase"><a class="viewcode-back" href="../../source/spython.image.html#spython.image.ImageBase">[docs]</a><span class="k">class</span> <span class="nc">ImageBase</span><span class="p">:</span>
     <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
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         <span class="k">if</span> <span class="n">protocol</span><span class="p">:</span>
@@ -224,49 +141,30 @@ <h1>Source code for spython.image</h1><div class="highlight"><pre>
 </pre></div>
 
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           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
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   </div>
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diff --git a/docs/api/modules/spython/image/cmd.html b/docs/api/modules/spython/image/cmd.html
deleted file mode 100644
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--- a/docs/api/modules/spython/image/cmd.html
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-        
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-        
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-           <div itemprop="articleBody">
-            
-  <h1>Source code for spython.image.cmd</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-
-<div class="viewcode-block" id="generate_image_commands"><a class="viewcode-back" href="../../../source/spython.image.cmd.html#spython.image.cmd.generate_image_commands">[docs]</a><span class="k">def</span> <span class="nf">generate_image_commands</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;The Image client holds the Singularity image command group, mainly</span>
-<span class="sd">    deprecated commands (image.import) and additional command helpers</span>
-<span class="sd">    that are commonly use but not provided by Singularity</span>
-
-<span class="sd">    The levels of verbosity (debug and quiet) are passed from the main</span>
-<span class="sd">    client via the environment variable MESSAGELEVEL.</span>
-
-<span class="sd">    These commands are added to Client.image under main/__init__.py to</span>
-<span class="sd">    expose subcommands:</span>
-
-<span class="sd">        Client.image.export</span>
-<span class="sd">        Client.image.imprt</span>
-<span class="sd">        Client.image.decompress</span>
-<span class="sd">        Client.image.create</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">class</span> <span class="nc">ImageClient</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-        <span class="n">group</span> <span class="o">=</span> <span class="s2">&quot;image&quot;</span>
-
-    <span class="kn">from</span> <span class="nn">spython.main.base.logger</span> <span class="kn">import</span> <span class="n">println</span>
-    <span class="kn">from</span> <span class="nn">spython.main.base.command</span> <span class="kn">import</span> <span class="n">init_command</span><span class="p">,</span> <span class="n">run_command</span>
-    <span class="kn">from</span> <span class="nn">.utils</span> <span class="kn">import</span> <span class="n">compress</span><span class="p">,</span> <span class="n">decompress</span>
-    <span class="kn">from</span> <span class="nn">.create</span> <span class="kn">import</span> <span class="n">create</span>
-    <span class="kn">from</span> <span class="nn">.importcmd</span> <span class="kn">import</span> <span class="n">importcmd</span>
-    <span class="kn">from</span> <span class="nn">.export</span> <span class="kn">import</span> <span class="n">export</span>
-
-    <span class="n">ImageClient</span><span class="o">.</span><span class="n">create</span> <span class="o">=</span> <span class="n">create</span>
-    <span class="n">ImageClient</span><span class="o">.</span><span class="n">imprt</span> <span class="o">=</span> <span class="n">importcmd</span>
-    <span class="n">ImageClient</span><span class="o">.</span><span class="n">export</span> <span class="o">=</span> <span class="n">export</span>
-    <span class="n">ImageClient</span><span class="o">.</span><span class="n">decompress</span> <span class="o">=</span> <span class="n">decompress</span>
-    <span class="n">ImageClient</span><span class="o">.</span><span class="n">compress</span> <span class="o">=</span> <span class="n">compress</span>
-    <span class="n">ImageClient</span><span class="o">.</span><span class="n">println</span> <span class="o">=</span> <span class="n">println</span>
-    <span class="n">ImageClient</span><span class="o">.</span><span class="n">init_command</span> <span class="o">=</span> <span class="n">init_command</span>
-    <span class="n">ImageClient</span><span class="o">.</span><span class="n">run_command</span> <span class="o">=</span> <span class="n">run_command</span>
-
-    <span class="n">cli</span> <span class="o">=</span> <span class="n">ImageClient</span><span class="p">()</span>
-    <span class="k">return</span> <span class="n">cli</span></div>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
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diff --git a/docs/api/modules/spython/image/cmd/create.html b/docs/api/modules/spython/image/cmd/create.html
deleted file mode 100644
index 89d0f798..00000000
--- a/docs/api/modules/spython/image/cmd/create.html
+++ /dev/null
@@ -1,239 +0,0 @@
-
-
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
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-            
-  <h1>Source code for spython.image.cmd.create</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">bot</span>
-
-
-<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../../../source/spython.image.cmd.html#spython.image.cmd.create.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">image_path</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">1024</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">singularity_options</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;create will create a a new image</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ==========</span>
-<span class="sd">    image_path: full path to image</span>
-<span class="sd">    size: image sizein MiB, default is 1024MiB</span>
-<span class="sd">    filesystem: supported file systems ext3/ext4 (ext[2/3]: default ext3</span>
-<span class="sd">    singularity_options: a list of options to provide to the singularity client</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">check_install</span>
-
-    <span class="n">check_install</span><span class="p">()</span>
-
-    <span class="n">cmd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">init_command</span><span class="p">(</span><span class="s2">&quot;image.create&quot;</span><span class="p">,</span> <span class="n">singularity_options</span><span class="p">)</span>
-    <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span> <span class="o">+</span> <span class="p">[</span><span class="s2">&quot;--size&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">size</span><span class="p">),</span> <span class="n">image_path</span><span class="p">]</span>
-
-    <span class="n">output</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="n">sudo</span><span class="p">)</span>
-    <span class="bp">self</span><span class="o">.</span><span class="n">println</span><span class="p">(</span><span class="n">output</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">image_path</span><span class="p">):</span>
-        <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;Could not create image </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">image_path</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">image_path</span></div>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
-  </div>
-    
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-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
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diff --git a/docs/api/modules/spython/image/cmd/export.html b/docs/api/modules/spython/image/cmd/export.html
deleted file mode 100644
index 09e709b7..00000000
--- a/docs/api/modules/spython/image/cmd/export.html
+++ /dev/null
@@ -1,238 +0,0 @@
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-      <li class="wy-breadcrumbs-aside">
-        
-      </li>
-    
-  </ul>
-
-  
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-</div>
-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-            
-  <h1>Source code for spython.image.cmd.export</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-
-<span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">bot</span>
-<span class="kn">import</span> <span class="nn">tempfile</span>
-
-
-<div class="viewcode-block" id="export"><a class="viewcode-back" href="../../../../source/spython.image.cmd.html#spython.image.cmd.export.export">[docs]</a><span class="k">def</span> <span class="nf">export</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">image_path</span><span class="p">,</span> <span class="n">tmptar</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;export will export an image, sudo must be used.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ==========</span>
-
-<span class="sd">    image_path: full path to image</span>
-<span class="sd">    tmptar: if defined, use custom temporary path for tar export</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">check_install</span>
-
-    <span class="n">check_install</span><span class="p">()</span>
-
-    <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-        <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;export is deprecated after Singularity 2.*&quot;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">tmptar</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">tmptar</span> <span class="o">=</span> <span class="s2">&quot;/</span><span class="si">%s</span><span class="s2">/tmptar.tar&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">tempfile</span><span class="o">.</span><span class="n">mkdtemp</span><span class="p">())</span>
-    <span class="n">cmd</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;singularity&quot;</span><span class="p">,</span> <span class="s2">&quot;image.export&quot;</span><span class="p">,</span> <span class="s2">&quot;-f&quot;</span><span class="p">,</span> <span class="n">tmptar</span><span class="p">,</span> <span class="n">image_path</span><span class="p">]</span>
-
-    <span class="bp">self</span><span class="o">.</span><span class="n">run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">tmptar</span></div>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
-  </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
-
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-
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-
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-
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-
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-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
-  </script>
-
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-  
-    
-   
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-</body>
-</html>
\ No newline at end of file
diff --git a/docs/api/modules/spython/image/cmd/importcmd.html b/docs/api/modules/spython/image/cmd/importcmd.html
deleted file mode 100644
index 79ea44b6..00000000
--- a/docs/api/modules/spython/image/cmd/importcmd.html
+++ /dev/null
@@ -1,229 +0,0 @@
-
-
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
-  <title>spython.image.cmd.importcmd &mdash; Singularity Python API 1 documentation</title>
-  
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-  
-  <link rel="stylesheet" href="../../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../../assets/pygments.css" type="text/css" />
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-    <script src="../../../../assets/js/html5shiv.min.js"></script>
-  <![endif]-->
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-      <script type="text/javascript" id="documentation_options" data-url_root="../../../../" src="../../../../assets/documentation_options.js"></script>
-        <script src="../../../../assets/jquery.js"></script>
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-          
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-    
-      <li><a href="../../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
-          <li><a href="../../../index.html">Module code</a> &raquo;</li>
-        
-          <li><a href="../../image.html">spython.image</a> &raquo;</li>
-        
-          <li><a href="../cmd.html">spython.image.cmd</a> &raquo;</li>
-        
-      <li>spython.image.cmd.importcmd</li>
-    
-    
-      <li class="wy-breadcrumbs-aside">
-        
-      </li>
-    
-  </ul>
-
-  
-  <hr/>
-</div>
-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-            
-  <h1>Source code for spython.image.cmd.importcmd</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-
-<div class="viewcode-block" id="importcmd"><a class="viewcode-back" href="../../../../source/spython.image.cmd.html#spython.image.cmd.importcmd.importcmd">[docs]</a><span class="k">def</span> <span class="nf">importcmd</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">image_path</span><span class="p">,</span> <span class="n">input_source</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;import will import (stdin) to the image</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ==========</span>
-<span class="sd">    image_path: path to image to import to.</span>
-<span class="sd">    input_source: input source or file</span>
-<span class="sd">    import_type: if not specified, imports whatever function is given</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">check_install</span>
-
-    <span class="n">check_install</span><span class="p">()</span>
-
-    <span class="n">cmd</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;singularity&quot;</span><span class="p">,</span> <span class="s2">&quot;image.import&quot;</span><span class="p">,</span> <span class="n">image_path</span><span class="p">,</span> <span class="n">input_source</span><span class="p">]</span>
-    <span class="n">output</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
-    <span class="bp">self</span><span class="o">.</span><span class="n">println</span><span class="p">(</span><span class="n">output</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">image_path</span></div>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
-  </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
-
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-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
-  </script>
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-    
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-</body>
-</html>
\ No newline at end of file
diff --git a/docs/api/modules/spython/image/cmd/utils.html b/docs/api/modules/spython/image/cmd/utils.html
deleted file mode 100644
index 6df8a6da..00000000
--- a/docs/api/modules/spython/image/cmd/utils.html
+++ /dev/null
@@ -1,235 +0,0 @@
-
-
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
-  <title>spython.image.cmd.utils &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../../assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
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-  <!--[if lt IE 9]>
-    <script src="../../../../assets/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../../../" src="../../../../assets/documentation_options.js"></script>
-        <script src="../../../../assets/jquery.js"></script>
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-    <link rel="index" title="Index" href="../../../../genindex.html" />
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-            <a href="../../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
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-          </a>
-
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-              <div class="version">
-                0.0
-              </div>
-            
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-<div role="search">
-  <form id="rtd-search-form" class="wy-form" action="../../../../search.html" method="get">
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-    <input type="hidden" name="check_keywords" value="yes" />
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-  </form>
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-<li class="toctree-l1"><a class="reference internal" href="../../../../source/spython.html">spython package</a></li>
-</ul>
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-        
-          <li><a href="../../image.html">spython.image</a> &raquo;</li>
-        
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-      <li class="wy-breadcrumbs-aside">
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-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-            
-  <h1>Source code for spython.image.cmd.utils</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">bot</span>
-
-
-<div class="viewcode-block" id="compress"><a class="viewcode-back" href="../../../../source/spython.image.cmd.html#spython.image.cmd.utils.compress">[docs]</a><span class="k">def</span> <span class="nf">compress</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">image_path</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;compress will (properly) compress an image&quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">image_path</span><span class="p">):</span>
-        <span class="n">compressed_image</span> <span class="o">=</span> <span class="s2">&quot;</span><span class="si">%s</span><span class="s2">.gz&quot;</span> <span class="o">%</span> <span class="n">image_path</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">system</span><span class="p">(</span><span class="s2">&quot;gzip -c -6 </span><span class="si">%s</span><span class="s2"> &gt; </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">image_path</span><span class="p">,</span> <span class="n">compressed_image</span><span class="p">))</span>
-        <span class="k">return</span> <span class="n">compressed_image</span>
-
-    <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;Cannot find image </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">image_path</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="decompress"><a class="viewcode-back" href="../../../../source/spython.image.cmd.html#spython.image.cmd.utils.decompress">[docs]</a><span class="k">def</span> <span class="nf">decompress</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">image_path</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;decompress will (properly) decompress an image&quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">image_path</span><span class="p">):</span>
-        <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;Cannot find image </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">image_path</span><span class="p">)</span>
-
-    <span class="n">extracted_file</span> <span class="o">=</span> <span class="n">image_path</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;.gz&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
-    <span class="n">cmd</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;gzip&quot;</span><span class="p">,</span> <span class="s2">&quot;-d&quot;</span><span class="p">,</span> <span class="s2">&quot;-f&quot;</span><span class="p">,</span> <span class="n">image_path</span><span class="p">]</span>
-    <span class="bp">self</span><span class="o">.</span><span class="n">run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="n">quiet</span><span class="p">)</span>  <span class="c1"># exits if return code != 0</span>
-    <span class="k">return</span> <span class="n">extracted_file</span></div>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
-  </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
-
-</footer>
-
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-      </div>
-
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-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
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\ No newline at end of file
diff --git a/docs/api/modules/spython/instance.html b/docs/api/modules/spython/instance.html
index ff413619..05bc37aa 100644
--- a/docs/api/modules/spython/instance.html
+++ b/docs/api/modules/spython/instance.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
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       <li>spython.instance</li>
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.instance</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -161,7 +78,7 @@ <h1>Source code for spython.instance</h1><div class="highlight"><pre>
 
 
 <div class="viewcode-block" id="Instance"><a class="viewcode-back" href="../../source/spython.instance.html#spython.instance.Instance">[docs]</a><span class="k">class</span> <span class="nc">Instance</span><span class="p">(</span><span class="n">ImageBase</span><span class="p">):</span>
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">image</span><span class="p">,</span> <span class="n">start</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">image</span><span class="p">,</span> <span class="n">start</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;An instance is an image running as an instance with services.</span>
 <span class="sd">        This class has functions appended under cmd/__init__ and is</span>
 <span class="sd">        instantiated when the user calls Client.</span>
@@ -179,12 +96,14 @@ <h1>Source code for spython.instance</h1><div class="highlight"><pre>
 
         <span class="c1"># Update metadats from arguments</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_update_metadata</span><span class="p">(</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">options</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">options</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;options&quot;</span><span class="p">,</span> <span class="p">[])</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">args</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;args&quot;</span><span class="p">,</span> <span class="p">[])</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">cmd</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span> <span class="o">=</span> <span class="n">quiet</span>
 
         <span class="c1"># Start the instance</span>
         <span class="k">if</span> <span class="n">start</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">start</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">start</span><span class="p">(</span><span class="n">quiet</span><span class="o">=</span><span class="n">quiet</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
 
     <span class="c1"># Unique resource identifier</span>
 
@@ -262,49 +181,30 @@ <h1>Source code for spython.instance</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-    
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-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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\ No newline at end of file
diff --git a/docs/api/modules/spython/instance/cmd.html b/docs/api/modules/spython/instance/cmd.html
index 37156c21..db58a795 100644
--- a/docs/api/modules/spython/instance/cmd.html
+++ b/docs/api/modules/spython/instance/cmd.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.instance.cmd &mdash; Singularity Python API 1 documentation</title>
-  
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-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
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   <![endif]-->
   
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+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
         <script src="../../../assets/underscore.js"></script>
         <script src="../../../assets/doctools.js"></script>
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-    <script type="text/javascript" src="../../../assets/js/theme.js"></script>
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+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
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@@ -71,87 +36,38 @@
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   </form>
 </div>
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
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               <ul>
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 </ul>
 
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-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
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   <ul class="wy-breadcrumbs">
-    
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-        
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-        
           <li><a href="../instance.html">spython.instance</a> &raquo;</li>
-        
       <li>spython.instance.cmd</li>
-    
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       <li class="wy-breadcrumbs-aside">
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-
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.instance.cmd</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -196,49 +112,30 @@ <h1>Source code for spython.instance.cmd</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
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-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
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+  <script>
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           SphinxRtdTheme.Navigation.enable(true);
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-   
+  </script> 
 
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\ No newline at end of file
diff --git a/docs/api/modules/spython/instance/cmd/iutils.html b/docs/api/modules/spython/instance/cmd/iutils.html
deleted file mode 100644
index a079ae56..00000000
--- a/docs/api/modules/spython/instance/cmd/iutils.html
+++ /dev/null
@@ -1,301 +0,0 @@
-
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-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
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-  
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-  
-  <link rel="stylesheet" href="../../../../assets/css/theme.css" type="text/css" />
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-    <script src="../../../../assets/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
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-        <script src="../../../../assets/jquery.js"></script>
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-          
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-                0.0
-              </div>
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-        
-          <li><a href="../../instance.html">spython.instance</a> &raquo;</li>
-        
-          <li><a href="../cmd.html">spython.instance.cmd</a> &raquo;</li>
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-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-            
-  <h1>Source code for spython.instance.cmd.iutils</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-<span class="kn">from</span> <span class="nn">spython.instance</span> <span class="kn">import</span> <span class="n">Instance</span>
-<span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">bot</span>
-
-
-<div class="viewcode-block" id="parse_table"><a class="viewcode-back" href="../../../../source/spython.instance.cmd.html#spython.instance.cmd.iutils.parse_table">[docs]</a><span class="k">def</span> <span class="nf">parse_table</span><span class="p">(</span><span class="n">table_string</span><span class="p">,</span> <span class="n">header</span><span class="p">,</span> <span class="n">remove_rows</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;parse a table to json from a string, where a header is expected by default.</span>
-<span class="sd">    Return a jsonified table.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ==========</span>
-<span class="sd">    table_string: the string table, ideally with a header</span>
-<span class="sd">    header: header of expected table, must match dimension (number columns)</span>
-<span class="sd">    remove_rows: an integer to indicate a number of rows to remove from top</span>
-<span class="sd">                 the default is 1 assuming we don&#39;t want the header</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">rows</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">table_string</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span> <span class="k">if</span> <span class="n">x</span><span class="p">]</span>
-    <span class="n">rows</span> <span class="o">=</span> <span class="n">rows</span><span class="p">[</span><span class="mi">0</span> <span class="o">+</span> <span class="n">remove_rows</span> <span class="p">:]</span>
-
-    <span class="c1"># Parse into json dictionary</span>
-    <span class="n">parsed</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">rows</span><span class="p">:</span>
-        <span class="n">item</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="c1"># This assumes no white spaces in each entry, which should be the case</span>
-        <span class="n">row</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">row</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">)</span> <span class="k">if</span> <span class="n">x</span><span class="p">]</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">row</span><span class="p">):</span>
-            <span class="n">item</span><span class="p">[</span><span class="n">header</span><span class="p">[</span><span class="n">i</span><span class="p">]]</span> <span class="o">=</span> <span class="n">r</span>
-        <span class="n">parsed</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">parsed</span></div>
-
-
-<div class="viewcode-block" id="get"><a class="viewcode-back" href="../../../../source/spython.instance.cmd.html#spython.instance.cmd.iutils.get">[docs]</a><span class="k">def</span> <span class="nf">get</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">return_json</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">singularity_options</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;get is a list for a single instance. It is assumed to be running,</span>
-<span class="sd">    and we need to look up the PID, etc.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">check_install</span>
-
-    <span class="n">check_install</span><span class="p">()</span>
-
-    <span class="c1"># Ensure compatible for singularity prior to 3.0, and after 3.0</span>
-    <span class="n">subgroup</span> <span class="o">=</span> <span class="s2">&quot;instance.list&quot;</span>
-
-    <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-        <span class="n">subgroup</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;instance&quot;</span><span class="p">,</span> <span class="s2">&quot;list&quot;</span><span class="p">]</span>
-
-    <span class="n">cmd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_init_command</span><span class="p">(</span><span class="n">subgroup</span><span class="p">,</span> <span class="n">singularity_options</span><span class="p">)</span>
-
-    <span class="n">cmd</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-    <span class="n">output</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-
-    <span class="c1"># Success, we have instances</span>
-
-    <span class="k">if</span> <span class="n">output</span><span class="p">[</span><span class="s2">&quot;return_code&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-
-        <span class="c1"># Only print the table if we are returning json</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">quiet</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">output</span><span class="p">[</span><span class="s2">&quot;message&quot;</span><span class="p">]))</span>
-
-        <span class="c1"># Prepare json result from table</span>
-
-        <span class="n">header</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;daemon_name&quot;</span><span class="p">,</span> <span class="s2">&quot;pid&quot;</span><span class="p">,</span> <span class="s2">&quot;container_image&quot;</span><span class="p">]</span>
-        <span class="n">instances</span> <span class="o">=</span> <span class="n">parse_table</span><span class="p">(</span><span class="n">output</span><span class="p">[</span><span class="s2">&quot;message&quot;</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">header</span><span class="p">)</span>
-
-        <span class="c1"># Does the user want instance objects instead?</span>
-        <span class="n">listing</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">return_json</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">instances</span><span class="p">:</span>
-                <span class="n">new_instance</span> <span class="o">=</span> <span class="n">Instance</span><span class="p">(</span>
-                    <span class="n">pid</span><span class="o">=</span><span class="n">i</span><span class="p">[</span><span class="s2">&quot;pid&quot;</span><span class="p">],</span>
-                    <span class="n">name</span><span class="o">=</span><span class="n">i</span><span class="p">[</span><span class="s2">&quot;daemon_name&quot;</span><span class="p">],</span>
-                    <span class="n">image</span><span class="o">=</span><span class="n">i</span><span class="p">[</span><span class="s2">&quot;container_image&quot;</span><span class="p">],</span>
-                    <span class="n">start</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
-                <span class="p">)</span>
-
-                <span class="n">listing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">new_instance</span><span class="p">)</span>
-            <span class="n">instances</span> <span class="o">=</span> <span class="n">listing</span>
-
-    <span class="c1"># Couldn&#39;t get UID</span>
-
-    <span class="k">elif</span> <span class="n">output</span><span class="p">[</span><span class="s2">&quot;return_code&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">255</span><span class="p">:</span>
-        <span class="n">bot</span><span class="o">.</span><span class="n">error</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t get UID&quot;</span><span class="p">)</span>
-
-    <span class="c1"># Return code of 0</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;No instances found.&quot;</span><span class="p">)</span>
-
-    <span class="c1"># If we are given a name, return just one</span>
-    <span class="k">if</span> <span class="n">name</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">instances</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="n">instances</span> <span class="o">=</span> <span class="n">instances</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-
-    <span class="k">return</span> <span class="n">instances</span></div>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
-  </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
-
-</footer>
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-
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-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
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\ No newline at end of file
diff --git a/docs/api/modules/spython/instance/cmd/logs.html b/docs/api/modules/spython/instance/cmd/logs.html
deleted file mode 100644
index 7af3073b..00000000
--- a/docs/api/modules/spython/instance/cmd/logs.html
+++ /dev/null
@@ -1,271 +0,0 @@
-
-
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
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-          
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-        
-          <li><a href="../../../index.html">Module code</a> &raquo;</li>
-        
-          <li><a href="../../instance.html">spython.instance</a> &raquo;</li>
-        
-          <li><a href="../cmd.html">spython.instance.cmd</a> &raquo;</li>
-        
-      <li>spython.instance.cmd.logs</li>
-    
-    
-      <li class="wy-breadcrumbs-aside">
-        
-      </li>
-    
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-
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-  <hr/>
-</div>
-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-            
-  <h1>Source code for spython.instance.cmd.logs</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2019-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-
-<span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">get_userhome</span><span class="p">,</span> <span class="n">get_username</span>
-<span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">bot</span>
-<span class="kn">import</span> <span class="nn">platform</span>
-<span class="kn">import</span> <span class="nn">os</span>
-
-
-<span class="k">def</span> <span class="nf">error_logs</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">print_logs</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;For Singularity 3.5 and later, we are able to programatically</span>
-<span class="sd">    derive the name of the log. In this case, return the content</span>
-<span class="sd">    to the user. See</span>
-<span class="sd">    https://github.com/sylabs/singularity/issues/1115#issuecomment-560457918</span>
-<span class="sd">    for when this was added.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ==========</span>
-<span class="sd">    print_logs: boolean to indicate to print to the screen along with</span>
-<span class="sd">                return (defaults to False to just return log string)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_logs</span><span class="p">(</span><span class="n">print_logs</span><span class="p">,</span> <span class="s2">&quot;err&quot;</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">output_logs</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">print_logs</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Get output logs for the user, if they exist.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ==========</span>
-<span class="sd">    print_logs: boolean to indicate to print to the screen along with</span>
-<span class="sd">                return (defaults to False to just return log string)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_logs</span><span class="p">(</span><span class="n">print_logs</span><span class="p">,</span> <span class="s2">&quot;out&quot;</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">_logs</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">print_logs</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">ext</span><span class="o">=</span><span class="s2">&quot;out&quot;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;A shared function to print log files. The only differing element is</span>
-<span class="sd">    the extension (err or out)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">check_install</span>
-
-    <span class="n">check_install</span><span class="p">()</span>
-
-    <span class="c1"># Formulate the path of the logs</span>
-    <span class="n">hostname</span> <span class="o">=</span> <span class="n">platform</span><span class="o">.</span><span class="n">node</span><span class="p">()</span>
-    <span class="n">logpath</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-        <span class="n">get_userhome</span><span class="p">(),</span>
-        <span class="s2">&quot;.singularity&quot;</span><span class="p">,</span>
-        <span class="s2">&quot;instances&quot;</span><span class="p">,</span>
-        <span class="s2">&quot;logs&quot;</span><span class="p">,</span>
-        <span class="n">hostname</span><span class="p">,</span>
-        <span class="n">get_username</span><span class="p">(),</span>
-        <span class="s2">&quot;</span><span class="si">%s</span><span class="s2">.</span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">ext</span><span class="p">),</span>
-    <span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">logpath</span><span class="p">):</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">logpath</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">filey</span><span class="p">:</span>
-            <span class="n">logs</span> <span class="o">=</span> <span class="n">filey</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
-        <span class="k">if</span> <span class="n">print_logs</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="n">logs</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">bot</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="s2">&quot;No log files have been produced.&quot;</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">logs</span>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
-  </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
-
-</footer>
-
-        </div>
-      </div>
-
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-
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-  
-
-  <script type="text/javascript">
-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
-  </script>
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diff --git a/docs/api/modules/spython/instance/cmd/start.html b/docs/api/modules/spython/instance/cmd/start.html
index 4f54279d..6526b251 100644
--- a/docs/api/modules/spython/instance/cmd/start.html
+++ b/docs/api/modules/spython/instance/cmd/start.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
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   <h1>Source code for spython.instance.cmd.start</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -163,7 +78,7 @@ <h1>Source code for spython.instance.cmd.start</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">bot</span>
 
 
-<div class="viewcode-block" id="start"><a class="viewcode-back" href="../../../../source/spython.instance.cmd.html#spython.instance.start">[docs]</a><span class="k">def</span> <span class="nf">start</span><span class="p">(</span>
+<div class="viewcode-block" id="start"><a class="viewcode-back" href="../../../../source/spython.instance.cmd.html#spython.instance.cmd.start.start">[docs]</a><span class="k">def</span> <span class="nf">start</span><span class="p">(</span>
     <span class="bp">self</span><span class="p">,</span>
     <span class="n">image</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">name</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
@@ -174,6 +89,7 @@ <h1>Source code for spython.instance.cmd.start</h1><div class="highlight"><pre>
     <span class="n">capture</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
     <span class="n">singularity_options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">environ</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
 <span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;start an instance. This is done by default when an instance is created.</span>
 
@@ -185,6 +101,7 @@ <h1>Source code for spython.instance.cmd.start</h1><div class="highlight"><pre>
 <span class="sd">    capture: capture output, default is False. With True likely to hang.</span>
 <span class="sd">    args: arguments to provide to the instance (supported Singularity 3.1+)</span>
 <span class="sd">    singularity_options: a list of options to provide to the singularity client</span>
+<span class="sd">    quiet: Do not print verbose output.</span>
 <span class="sd">    options: a list of tuples, each an option to give to the start command</span>
 <span class="sd">             [(&quot;--bind&quot;, &quot;/tmp&quot;),...]</span>
 
@@ -209,12 +126,11 @@ <h1>Source code for spython.instance.cmd.start</h1><div class="highlight"><pre>
 
         <span class="n">image</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_image</span>
 
-    <span class="c1"># Derive subgroup command based on singularity version</span>
-    <span class="n">subgroup</span> <span class="o">=</span> <span class="s2">&quot;instance.start&quot;</span>
-    <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-        <span class="n">subgroup</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;instance&quot;</span><span class="p">,</span> <span class="s2">&quot;start&quot;</span><span class="p">]</span>
+    <span class="n">cmd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_init_command</span><span class="p">([</span><span class="s2">&quot;instance&quot;</span><span class="p">,</span> <span class="s2">&quot;start&quot;</span><span class="p">],</span> <span class="n">singularity_options</span><span class="p">)</span>
 
-    <span class="n">cmd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_init_command</span><span class="p">(</span><span class="n">subgroup</span><span class="p">,</span> <span class="n">singularity_options</span><span class="p">)</span>
+    <span class="c1"># Set options and args</span>
+    <span class="n">args</span> <span class="o">=</span> <span class="n">args</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">args</span>
+    <span class="n">options</span> <span class="o">=</span> <span class="n">options</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">options</span>
 
     <span class="c1"># Add options, if they are provided</span>
     <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">options</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
@@ -229,6 +145,10 @@ <h1>Source code for spython.instance.cmd.start</h1><div class="highlight"><pre>
             <span class="n">args</span> <span class="o">=</span> <span class="p">[</span><span class="n">args</span><span class="p">]</span>
         <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span> <span class="o">+</span> <span class="n">args</span>
 
+    <span class="c1"># Print verbose output</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span><span class="p">):</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
     <span class="c1"># Save the options and cmd, if the user wants to see them later</span>
     <span class="bp">self</span><span class="o">.</span><span class="n">options</span> <span class="o">=</span> <span class="n">options</span>
     <span class="bp">self</span><span class="o">.</span><span class="n">args</span> <span class="o">=</span> <span class="n">args</span>
@@ -254,49 +174,30 @@ <h1>Source code for spython.instance.cmd.start</h1><div class="highlight"><pre>
 </pre></div>
 
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           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
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diff --git a/docs/api/modules/spython/instance/cmd/stop.html b/docs/api/modules/spython/instance/cmd/stop.html
index c9deacfd..c4817847 100644
--- a/docs/api/modules/spython/instance/cmd/stop.html
+++ b/docs/api/modules/spython/instance/cmd/stop.html
@@ -1,69 +1,34 @@
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-  <link rel="stylesheet" href="../../../../assets/pygments.css" type="text/css" />
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+      <link rel="stylesheet" href="../../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../../assets/css/theme.css" type="text/css" />
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+        <script data-url_root="../../../../" id="documentation_options" src="../../../../assets/documentation_options.js"></script>
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   <ul class="wy-breadcrumbs">
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           <li><a href="../../instance.html">spython.instance</a> &raquo;</li>
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.instance.cmd.stop</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -163,13 +78,14 @@ <h1>Source code for spython.instance.cmd.stop</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">bot</span>
 
 
-<div class="viewcode-block" id="stop"><a class="viewcode-back" href="../../../../source/spython.instance.cmd.html#spython.instance.stop">[docs]</a><span class="k">def</span> <span class="nf">stop</span><span class="p">(</span>
+<div class="viewcode-block" id="stop"><a class="viewcode-back" href="../../../../source/spython.instance.cmd.html#spython.instance.cmd.stop.stop">[docs]</a><span class="k">def</span> <span class="nf">stop</span><span class="p">(</span>
     <span class="bp">self</span><span class="p">,</span>
     <span class="n">name</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
     <span class="n">sudo_options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">timeout</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">singularity_options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
 <span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;stop an instance. This is done by default when an instance is created.</span>
 
@@ -178,6 +94,7 @@ <h1>Source code for spython.instance.cmd.stop</h1><div class="highlight"><pre>
 <span class="sd">    name: a name for the instance</span>
 <span class="sd">    sudo: if the user wants to run the command with sudo</span>
 <span class="sd">    singularity_options: a list of options to provide to the singularity client</span>
+<span class="sd">    quiet: Do not print verbose output.</span>
 <span class="sd">    timeout: forcebly kill non-stopped instance after the</span>
 <span class="sd">             timeout specified in seconds</span>
 
@@ -189,12 +106,9 @@ <h1>Source code for spython.instance.cmd.stop</h1><div class="highlight"><pre>
 
     <span class="n">check_install</span><span class="p">()</span>
 
-    <span class="n">subgroup</span> <span class="o">=</span> <span class="s2">&quot;instance.stop&quot;</span>
-
-    <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-        <span class="n">subgroup</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;instance&quot;</span><span class="p">,</span> <span class="s2">&quot;stop&quot;</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">timeout</span><span class="p">:</span>
-            <span class="n">subgroup</span> <span class="o">+=</span> <span class="p">[</span><span class="s2">&quot;-t&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">timeout</span><span class="p">)]</span>
+    <span class="n">subgroup</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;instance&quot;</span><span class="p">,</span> <span class="s2">&quot;stop&quot;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">timeout</span><span class="p">:</span>
+        <span class="n">subgroup</span> <span class="o">+=</span> <span class="p">[</span><span class="s2">&quot;-t&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">timeout</span><span class="p">)]</span>
 
     <span class="n">cmd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_init_command</span><span class="p">(</span><span class="n">subgroup</span><span class="p">,</span> <span class="n">singularity_options</span><span class="p">)</span>
 
@@ -204,6 +118,10 @@ <h1>Source code for spython.instance.cmd.stop</h1><div class="highlight"><pre>
         <span class="n">instance_name</span> <span class="o">=</span> <span class="n">name</span>
     <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span> <span class="o">+</span> <span class="p">[</span><span class="n">instance_name</span><span class="p">]</span>
 
+    <span class="c1"># Print verbose output</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span><span class="p">):</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
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 </pre></div>
 
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           </div>
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-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
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   </div>
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-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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+  <script>
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
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-            <a href="../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
           </a>
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 </ul>
 
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           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.logger.message</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
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@@ -486,49 +403,30 @@ <h1>Source code for spython.logger.message</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
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   </div>
-    
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-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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         </div>
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-
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-
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+  <script>
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+<html class="writer-html4" lang="en" >
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-  <meta charset="utf-8">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
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   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../../" src="../../../assets/documentation_options.js"></script>
+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
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+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
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-<body class="wy-body-for-nav">
-
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       <div class="wy-side-scroll">
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-          
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-          
-            <a href="../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
-          
-            
-            
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                 0.0
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-          
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 </ul>
 
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-          
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-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
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-    
       <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
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       <li class="wy-breadcrumbs-aside">
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            <div itemprop="articleBody">
-            
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   <h1>Source code for spython.logger.progress</h1><div class="highlight"><pre>
 <span></span><span class="c1"># -*- coding: utf-8 -*-</span>
 
@@ -176,7 +93,7 @@ <h1>Source code for spython.logger.progress</h1><div class="highlight"><pre>
 <span class="n">ETA_SMA_WINDOW</span> <span class="o">=</span> <span class="mi">9</span>
 
 
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+<div class="viewcode-block" id="ProgressBar"><a class="viewcode-back" href="../../../source/spython.logger.html#spython.logger.progress.ProgressBar">[docs]</a><span class="k">class</span> <span class="nc">ProgressBar</span><span class="p">:</span>
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@@ -303,49 +220,30 @@ <h1>Source code for spython.logger.progress</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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+  <script>
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-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
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   <![endif]-->
   
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+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
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     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
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+<body class="wy-body-for-nav"> 
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-    
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       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
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-          
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
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                 0.0
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 <li class="toctree-l1"><a class="reference internal" href="../../../source/spython.html">spython package</a></li>
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   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
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           <li><a href="../../index.html">Module code</a> &raquo;</li>
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           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.logger.spinner</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -225,49 +142,30 @@ <h1>Source code for spython.logger.spinner</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
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-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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diff --git a/docs/api/modules/spython/main.html b/docs/api/modules/spython/main.html
index c50d81e9..f152d22f 100644
--- a/docs/api/modules/spython/main.html
+++ b/docs/api/modules/spython/main.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main &mdash; Singularity Python API 1 documentation</title>
-  
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-  <link rel="stylesheet" href="../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../assets/pygments.css" type="text/css" />
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+      <link rel="stylesheet" href="../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../" src="../../assets/documentation_options.js"></script>
+        <script data-url_root="../../" id="documentation_options" src="../../assets/documentation_options.js"></script>
         <script src="../../assets/jquery.js"></script>
         <script src="../../assets/underscore.js"></script>
         <script src="../../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../../assets/js/theme.js"></script>
-
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+    <script src="../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
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+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
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     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
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-          
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-          
-            <a href="../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
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+            <a href="../../index.html" class="icon icon-home"> Singularity Python API
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -71,85 +36,37 @@
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   </form>
 </div>
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
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 <li class="toctree-l1"><a class="reference internal" href="../../source/spython.html">spython package</a></li>
 </ul>
 
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-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
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-      <nav class="wy-nav-top" aria-label="top navigation">
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
           <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
           <a href="../../index.html">Singularity Python API</a>
-        
       </nav>
 
-
       <div class="wy-nav-content">
-        
         <div class="rst-content">
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-
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="../index.html">Module code</a> &raquo;</li>
-        
       <li>spython.main</li>
-    
-    
       <li class="wy-breadcrumbs-aside">
-        
       </li>
-    
   </ul>
-
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -167,7 +84,6 @@ <h1>Source code for spython.main</h1><div class="highlight"><pre>
 <span class="sd">    debug: turn on debugging mode</span>
 
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">get_singularity_version</span>
     <span class="kn">from</span> <span class="nn">.base</span> <span class="kn">import</span> <span class="n">Client</span> <span class="k">as</span> <span class="n">client</span>
 
     <span class="n">client</span><span class="o">.</span><span class="n">quiet</span> <span class="o">=</span> <span class="n">quiet</span>
@@ -182,14 +98,13 @@ <h1>Source code for spython.main</h1><div class="highlight"><pre>
     <span class="kn">from</span> <span class="nn">.instances</span> <span class="kn">import</span> <span class="n">list_instances</span><span class="p">,</span> <span class="n">stopall</span>  <span class="c1"># global instance commands</span>
     <span class="kn">from</span> <span class="nn">.run</span> <span class="kn">import</span> <span class="n">run</span>
     <span class="kn">from</span> <span class="nn">.pull</span> <span class="kn">import</span> <span class="n">pull</span>
-    <span class="kn">from</span> <span class="nn">.export</span> <span class="kn">import</span> <span class="n">export</span><span class="p">,</span> <span class="n">_export</span>
+    <span class="kn">from</span> <span class="nn">.export</span> <span class="kn">import</span> <span class="n">export</span>
 
     <span class="c1"># Actions</span>
     <span class="n">client</span><span class="o">.</span><span class="n">apps</span> <span class="o">=</span> <span class="n">apps</span>
     <span class="n">client</span><span class="o">.</span><span class="n">build</span> <span class="o">=</span> <span class="n">build</span>
     <span class="n">client</span><span class="o">.</span><span class="n">execute</span> <span class="o">=</span> <span class="n">execute</span>
     <span class="n">client</span><span class="o">.</span><span class="n">export</span> <span class="o">=</span> <span class="n">export</span>
-    <span class="n">client</span><span class="o">.</span><span class="n">_export</span> <span class="o">=</span> <span class="n">_export</span>
     <span class="n">client</span><span class="o">.</span><span class="n">help</span> <span class="o">=</span> <span class="n">helpcmd</span>
     <span class="n">client</span><span class="o">.</span><span class="n">inspect</span> <span class="o">=</span> <span class="n">inspect</span>
     <span class="n">client</span><span class="o">.</span><span class="n">instances</span> <span class="o">=</span> <span class="n">list_instances</span>
@@ -197,11 +112,6 @@ <h1>Source code for spython.main</h1><div class="highlight"><pre>
     <span class="n">client</span><span class="o">.</span><span class="n">shell</span> <span class="o">=</span> <span class="n">shell</span>
     <span class="n">client</span><span class="o">.</span><span class="n">pull</span> <span class="o">=</span> <span class="n">pull</span>
 
-    <span class="c1"># Command Groups, Images</span>
-    <span class="kn">from</span> <span class="nn">spython.image.cmd</span> <span class="kn">import</span> <span class="n">generate_image_commands</span>  <span class="c1"># deprecated</span>
-
-    <span class="n">client</span><span class="o">.</span><span class="n">image</span> <span class="o">=</span> <span class="n">generate_image_commands</span><span class="p">()</span>
-
     <span class="c1"># Commands Groups, Instances</span>
     <span class="kn">from</span> <span class="nn">spython.instance.cmd</span> <span class="kn">import</span> <span class="p">(</span>
         <span class="n">generate_instance_commands</span><span class="p">,</span>
@@ -212,24 +122,22 @@ <h1>Source code for spython.main</h1><div class="highlight"><pre>
     <span class="n">client</span><span class="o">.</span><span class="n">instance</span><span class="o">.</span><span class="n">version</span> <span class="o">=</span> <span class="n">client</span><span class="o">.</span><span class="n">version</span>
 
     <span class="c1"># Commands Groups, OCI (Singularity version 3 and up)</span>
-    <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="n">get_singularity_version</span><span class="p">():</span>
-        <span class="kn">from</span> <span class="nn">spython.oci.cmd</span> <span class="kn">import</span> <span class="n">generate_oci_commands</span>
+    <span class="kn">from</span> <span class="nn">spython.oci.cmd</span> <span class="kn">import</span> <span class="n">generate_oci_commands</span>
 
-        <span class="n">client</span><span class="o">.</span><span class="n">oci</span> <span class="o">=</span> <span class="n">generate_oci_commands</span><span class="p">()()</span>  <span class="c1"># first () runs function, second</span>
-        <span class="c1"># initializes OciImage class</span>
-        <span class="n">client</span><span class="o">.</span><span class="n">oci</span><span class="o">.</span><span class="n">debug</span> <span class="o">=</span> <span class="n">client</span><span class="o">.</span><span class="n">debug</span>
-        <span class="n">client</span><span class="o">.</span><span class="n">oci</span><span class="o">.</span><span class="n">quiet</span> <span class="o">=</span> <span class="n">client</span><span class="o">.</span><span class="n">quiet</span>
-        <span class="n">client</span><span class="o">.</span><span class="n">oci</span><span class="o">.</span><span class="n">OciImage</span><span class="o">.</span><span class="n">quiet</span> <span class="o">=</span> <span class="n">client</span><span class="o">.</span><span class="n">quiet</span>
-        <span class="n">client</span><span class="o">.</span><span class="n">oci</span><span class="o">.</span><span class="n">OciImage</span><span class="o">.</span><span class="n">debug</span> <span class="o">=</span> <span class="n">client</span><span class="o">.</span><span class="n">debug</span>
+    <span class="n">client</span><span class="o">.</span><span class="n">oci</span> <span class="o">=</span> <span class="n">generate_oci_commands</span><span class="p">()()</span>  <span class="c1"># first () runs function, second</span>
+    <span class="c1"># initializes OciImage class</span>
+    <span class="n">client</span><span class="o">.</span><span class="n">oci</span><span class="o">.</span><span class="n">debug</span> <span class="o">=</span> <span class="n">client</span><span class="o">.</span><span class="n">debug</span>
+    <span class="n">client</span><span class="o">.</span><span class="n">oci</span><span class="o">.</span><span class="n">quiet</span> <span class="o">=</span> <span class="n">client</span><span class="o">.</span><span class="n">quiet</span>
+    <span class="n">client</span><span class="o">.</span><span class="n">oci</span><span class="o">.</span><span class="n">OciImage</span><span class="o">.</span><span class="n">quiet</span> <span class="o">=</span> <span class="n">client</span><span class="o">.</span><span class="n">quiet</span>
+    <span class="n">client</span><span class="o">.</span><span class="n">oci</span><span class="o">.</span><span class="n">OciImage</span><span class="o">.</span><span class="n">debug</span> <span class="o">=</span> <span class="n">client</span><span class="o">.</span><span class="n">debug</span>
 
     <span class="c1"># Initialize</span>
     <span class="n">cli</span> <span class="o">=</span> <span class="n">client</span><span class="p">()</span>
 
     <span class="c1"># Pass on verbosity</span>
-    <span class="k">for</span> <span class="n">subclient</span> <span class="ow">in</span> <span class="p">[</span><span class="n">cli</span><span class="o">.</span><span class="n">image</span><span class="p">,</span> <span class="n">cli</span><span class="o">.</span><span class="n">instance</span><span class="p">]:</span>
-        <span class="n">subclient</span><span class="o">.</span><span class="n">debug</span> <span class="o">=</span> <span class="n">cli</span><span class="o">.</span><span class="n">debug</span>
-        <span class="n">subclient</span><span class="o">.</span><span class="n">quiet</span> <span class="o">=</span> <span class="n">cli</span><span class="o">.</span><span class="n">quiet</span>
-        <span class="n">subclient</span><span class="o">.</span><span class="n">version</span> <span class="o">=</span> <span class="n">cli</span><span class="o">.</span><span class="n">version</span>
+    <span class="n">cli</span><span class="o">.</span><span class="n">instance</span><span class="o">.</span><span class="n">debug</span> <span class="o">=</span> <span class="n">cli</span><span class="o">.</span><span class="n">debug</span>
+    <span class="n">cli</span><span class="o">.</span><span class="n">instance</span><span class="o">.</span><span class="n">quiet</span> <span class="o">=</span> <span class="n">cli</span><span class="o">.</span><span class="n">quiet</span>
+    <span class="n">cli</span><span class="o">.</span><span class="n">instance</span><span class="o">.</span><span class="n">version</span> <span class="o">=</span> <span class="n">cli</span><span class="o">.</span><span class="n">version</span>
 
     <span class="k">return</span> <span class="n">cli</span></div>
 
@@ -238,49 +146,30 @@ <h1>Source code for spython.main</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
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-  
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-  <script type="text/javascript">
+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
 
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diff --git a/docs/api/modules/spython/main/apps.html b/docs/api/modules/spython/main/apps.html
index 52524877..794c46c1 100644
--- a/docs/api/modules/spython/main/apps.html
+++ b/docs/api/modules/spython/main/apps.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.apps &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
-  
+      <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../../../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../../" src="../../../assets/documentation_options.js"></script>
+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
         <script src="../../../assets/underscore.js"></script>
         <script src="../../../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../../../assets/js/theme.js"></script>
-
-    
+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
-          
-            
-            
               <div class="version">
                 0.0
               </div>
-            
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-
-          
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -71,87 +36,38 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
-          
-        </div>
-
-        
-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-          
-            
-            
-              
-            
-            
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../source/spython.html">spython package</a></li>
 </ul>
 
-            
-          
         </div>
-        
       </div>
     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
-
-      
-      <nav class="wy-nav-top" aria-label="top navigation">
-        
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
           <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
           <a href="../../../index.html">Singularity Python API</a>
-        
       </nav>
 
-
       <div class="wy-nav-content">
-        
         <div class="rst-content">
-        
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-
-
-
-
-
-
-
-
-
-
-<div role="navigation" aria-label="breadcrumbs navigation">
-
+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
           <li><a href="../main.html">spython.main</a> &raquo;</li>
-        
       <li>spython.main.apps</li>
-    
-    
       <li class="wy-breadcrumbs-aside">
-        
       </li>
-    
   </ul>
-
-  
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.apps</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -194,49 +110,30 @@ <h1>Source code for spython.main.apps</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
-
     </section>
-
   </div>
-  
-
-  <script type="text/javascript">
+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
-  </script>
-
-  
-  
-    
-   
+  </script> 
 
 </body>
 </html>
\ No newline at end of file
diff --git a/docs/api/modules/spython/main/base.html b/docs/api/modules/spython/main/base.html
index cb1a0496..3e0dec69 100644
--- a/docs/api/modules/spython/main/base.html
+++ b/docs/api/modules/spython/main/base.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
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-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
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@@ -172,7 +88,7 @@ <h1>Source code for spython.main.base</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">.generate</span> <span class="kn">import</span> <span class="n">RobotNamer</span>
 
 
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+<div class="viewcode-block" id="Client"><a class="viewcode-back" href="../../../source/spython.main.base.html#spython.main.base.Client">[docs]</a><span class="k">class</span> <span class="nc">Client</span><span class="p">:</span>
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@@ -189,11 +105,11 @@ <h1>Source code for spython.main.base</h1><div class="highlight"><pre>
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+<div class="viewcode-block" id="Client.version"><a class="viewcode-back" href="../../../source/spython.main.base.html#spython.main.base.Client.version">[docs]</a>    <span class="k">def</span> <span class="nf">version</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
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+<div class="viewcode-block" id="Client.version_info"><a class="viewcode-back" href="../../../source/spython.main.base.html#spython.main.base.Client.version_info">[docs]</a>    <span class="k">def</span> <span class="nf">version_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
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@@ -222,49 +138,30 @@ <h1>Source code for spython.main.base</h1><div class="highlight"><pre>
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-            
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   <h1>Source code for spython.main.base.command</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -310,49 +225,30 @@ <h1>Source code for spython.main.base.command</h1><div class="highlight"><pre>
 </pre></div>
 
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-           
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-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
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-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
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-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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index b0d480d8..ffc627af 100644
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-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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-  <link rel="stylesheet" href="../../../../assets/pygments.css" type="text/css" />
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+      <link rel="stylesheet" href="../../../../assets/css/theme.css" type="text/css" />
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   <![endif]-->
   
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+        <script data-url_root="../../../../" id="documentation_options" src="../../../../assets/documentation_options.js"></script>
         <script src="../../../../assets/jquery.js"></script>
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         <script src="../../../../assets/doctools.js"></script>
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-
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+    <script src="../../../../assets/js/theme.js"></script>
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     <link rel="search" title="Search" href="../../../../search.html" /> 
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+<body class="wy-body-for-nav"> 
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+            <a href="../../../../index.html" class="icon icon-home"> Singularity Python API
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   <h1>Source code for spython.main.base.flags</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -225,49 +140,30 @@ <h1>Source code for spython.main.base.flags</h1><div class="highlight"><pre>
 </pre></div>
 
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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diff --git a/docs/api/modules/spython/main/base/generate.html b/docs/api/modules/spython/main/base/generate.html
index 98144d57..76551754 100644
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+++ b/docs/api/modules/spython/main/base/generate.html
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.base.generate &mdash; Singularity Python API 1 documentation</title>
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         <script src="../../../../assets/doctools.js"></script>
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 </head>
 
-<body class="wy-body-for-nav">
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-        
           <li><a href="../../../index.html">Module code</a> &raquo;</li>
-        
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-        
           <li><a href="../base.html">spython.main.base</a> &raquo;</li>
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       <li class="wy-breadcrumbs-aside">
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       </li>
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-
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.base.generate</h1><div class="highlight"><pre>
 <span></span><span class="ch">#!/usr/bin/env python</span>
 
-<span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -165,7 +80,7 @@ <h1>Source code for spython.main.base.generate</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">random</span> <span class="kn">import</span> <span class="n">choice</span>
 
 
-<div class="viewcode-block" id="RobotNamer"><a class="viewcode-back" href="../../../../source/spython.main.base.html#spython.instance.RobotNamer">[docs]</a><span class="k">class</span> <span class="nc">RobotNamer</span><span class="p">:</span>
+<div class="viewcode-block" id="RobotNamer"><a class="viewcode-back" href="../../../../source/spython.main.base.html#spython.main.base.generate.RobotNamer">[docs]</a><span class="k">class</span> <span class="nc">RobotNamer</span><span class="p">:</span>
 
     <span class="n">_descriptors</span> <span class="o">=</span> <span class="p">[</span>
         <span class="s2">&quot;chunky&quot;</span><span class="p">,</span>
@@ -175,7 +90,7 @@ <h1>Source code for spython.main.base.generate</h1><div class="highlight"><pre>
         <span class="s2">&quot;dinosaur&quot;</span><span class="p">,</span>
         <span class="s2">&quot;boopy&quot;</span><span class="p">,</span>
         <span class="s2">&quot;lovely&quot;</span><span class="p">,</span>
-        <span class="s2">&quot;carniverous&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;carnivorous&quot;</span><span class="p">,</span>
         <span class="s2">&quot;hanky&quot;</span><span class="p">,</span>
         <span class="s2">&quot;loopy&quot;</span><span class="p">,</span>
         <span class="s2">&quot;doopy&quot;</span><span class="p">,</span>
@@ -338,7 +253,7 @@ <h1>Source code for spython.main.base.generate</h1><div class="highlight"><pre>
         <span class="s2">&quot;chip&quot;</span><span class="p">,</span>
     <span class="p">]</span>
 
-<div class="viewcode-block" id="RobotNamer.generate"><a class="viewcode-back" href="../../../../source/spython.main.base.html#spython.instance.RobotNamer.generate">[docs]</a>    <span class="k">def</span> <span class="nf">generate</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">delim</span><span class="o">=</span><span class="s2">&quot;-&quot;</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mi">4</span><span class="p">,</span> <span class="n">chars</span><span class="o">=</span><span class="s2">&quot;0123456789&quot;</span><span class="p">):</span>
+<div class="viewcode-block" id="RobotNamer.generate"><a class="viewcode-back" href="../../../../source/spython.main.base.html#spython.main.base.generate.RobotNamer.generate">[docs]</a>    <span class="k">def</span> <span class="nf">generate</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">delim</span><span class="o">=</span><span class="s2">&quot;-&quot;</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mi">4</span><span class="p">,</span> <span class="n">chars</span><span class="o">=</span><span class="s2">&quot;0123456789&quot;</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Generate a robot name. Inspiration from Haikunator, but much more</span>
 <span class="sd">                 poorly implemented ;)</span>
@@ -368,7 +283,7 @@ <h1>Source code for spython.main.base.generate</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">choice</span><span class="p">(</span><span class="n">select_from</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="main"><a class="viewcode-back" href="../../../../source/spython.main.base.html#spython.instance.main">[docs]</a><span class="k">def</span> <span class="nf">main</span><span class="p">():</span>
+<div class="viewcode-block" id="main"><a class="viewcode-back" href="../../../../source/spython.main.base.html#spython.main.base.generate.main">[docs]</a><span class="k">def</span> <span class="nf">main</span><span class="p">():</span>
     <span class="n">bot</span> <span class="o">=</span> <span class="n">RobotNamer</span><span class="p">()</span>
     <span class="nb">print</span><span class="p">(</span><span class="n">bot</span><span class="o">.</span><span class="n">generate</span><span class="p">())</span></div>
 
@@ -378,49 +293,30 @@ <h1>Source code for spython.main.base.generate</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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diff --git a/docs/api/modules/spython/main/base/logger.html b/docs/api/modules/spython/main/base/logger.html
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+<html class="writer-html4" lang="en" >
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.base.logger &mdash; Singularity Python API 1 documentation</title>
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-  <link rel="stylesheet" href="../../../../assets/pygments.css" type="text/css" />
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         <script src="../../../../assets/doctools.js"></script>
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+    <script src="../../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
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-        
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-        
           <li><a href="../base.html">spython.main.base</a> &raquo;</li>
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       <li class="wy-breadcrumbs-aside">
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.base.logger</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -169,7 +84,7 @@ <h1>Source code for spython.main.base.logger</h1><div class="highlight"><pre>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ==========</span>
-<span class="sd">    quiet: boolean if True, set to quiet. Gets overriden by environment</span>
+<span class="sd">    quiet: boolean if True, set to quiet. Gets overridden by environment</span>
 <span class="sd">           setting, and only exists to define default</span>
 
 <span class="sd">    &quot;&quot;&quot;</span>
@@ -195,49 +110,30 @@ <h1>Source code for spython.main.base.logger</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
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-</footer>
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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diff --git a/docs/api/modules/spython/main/base/sutils.html b/docs/api/modules/spython/main/base/sutils.html
index 2abfcec4..b24cda29 100644
--- a/docs/api/modules/spython/main/base/sutils.html
+++ b/docs/api/modules/spython/main/base/sutils.html
@@ -1,69 +1,34 @@
-
-
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-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
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-  <meta charset="utf-8">
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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-  
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-  <link rel="stylesheet" href="../../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../../assets/pygments.css" type="text/css" />
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+        <script data-url_root="../../../../" id="documentation_options" src="../../../../assets/documentation_options.js"></script>
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           <li><a href="../../../index.html">Module code</a> &raquo;</li>
-        
           <li><a href="../../main.html">spython.main</a> &raquo;</li>
-        
           <li><a href="../base.html">spython.main.base</a> &raquo;</li>
-        
       <li>spython.main.base.sutils</li>
-    
-    
       <li class="wy-breadcrumbs-aside">
-        
       </li>
-    
   </ul>
-
-  
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.base.sutils</h1><div class="highlight"><pre>
 <span></span><span class="c1"># Singularity Image utils for interacting with the Image/Instance</span>
 <span class="c1">#           classes from the client</span>
 
-<span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -228,49 +143,30 @@ <h1>Source code for spython.main.base.sutils</h1><div class="highlight"><pre>
 </pre></div>
 
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-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-    
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-</footer>
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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diff --git a/docs/api/modules/spython/main/build.html b/docs/api/modules/spython/main/build.html
index 76f2cfa7..c71e5bd7 100644
--- a/docs/api/modules/spython/main/build.html
+++ b/docs/api/modules/spython/main/build.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.build &mdash; Singularity Python API 1 documentation</title>
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-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
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+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
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         <script src="../../../assets/doctools.js"></script>
-    
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+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
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+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
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@@ -71,87 +36,38 @@
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
           <li><a href="../main.html">spython.main</a> &raquo;</li>
-        
       <li>spython.main.build</li>
-    
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       <li class="wy-breadcrumbs-aside">
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       </li>
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   </ul>
-
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   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.build</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -195,7 +111,7 @@ <h1>Source code for spython.main.build</h1><div class="highlight"><pre>
 
 <span class="sd">    recipe: the path to the recipe file (or source to build from). If not</span>
 <span class="sd">               defined, we look for &quot;Singularity&quot; file in $PWD</span>
-<span class="sd">    image: the image to build (if None, will use arbitary name</span>
+<span class="sd">    image: the image to build (if None, will use arbitrary name</span>
 <span class="sd">    isolated: if True, run build with --isolated flag</span>
 <span class="sd">    sandbox: if True, create a writable sandbox</span>
 <span class="sd">    writable: if True, use writable ext3 (sandbox takes preference)</span>
@@ -220,9 +136,6 @@ <h1>Source code for spython.main.build</h1><div class="highlight"><pre>
     <span class="c1"># If no extra options</span>
     <span class="n">options</span> <span class="o">=</span> <span class="n">options</span> <span class="ow">or</span> <span class="p">[]</span>
 
-    <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-        <span class="n">ext</span> <span class="o">=</span> <span class="s2">&quot;sif&quot;</span>
-
     <span class="c1"># Force the build if the image / sandbox exists</span>
     <span class="k">if</span> <span class="n">force</span><span class="p">:</span>
         <span class="n">cmd</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;--force&quot;</span><span class="p">)</span>
@@ -262,6 +175,10 @@ <h1>Source code for spython.main.build</h1><div class="highlight"><pre>
 
     <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span> <span class="o">+</span> <span class="n">options</span> <span class="o">+</span> <span class="p">[</span><span class="n">image</span><span class="p">,</span> <span class="n">recipe</span><span class="p">]</span>
 
+    <span class="c1"># Does the user want to see the command printed?</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span><span class="p">):</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
     <span class="k">if</span> <span class="ow">not</span> <span class="n">stream</span><span class="p">:</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_run_command</span><span class="p">(</span>
             <span class="n">cmd</span><span class="p">,</span>
@@ -282,49 +199,30 @@ <h1>Source code for spython.main.build</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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diff --git a/docs/api/modules/spython/main/execute.html b/docs/api/modules/spython/main/execute.html
index ce9cdca6..555182d5 100644
--- a/docs/api/modules/spython/main/execute.html
+++ b/docs/api/modules/spython/main/execute.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
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-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.execute &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
-  
+      <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../../../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../../" src="../../../assets/documentation_options.js"></script>
+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
         <script src="../../../assets/underscore.js"></script>
         <script src="../../../assets/doctools.js"></script>
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-    <script type="text/javascript" src="../../../assets/js/theme.js"></script>
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+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
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+<body class="wy-body-for-nav"> 
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
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@@ -71,87 +36,38 @@
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   </form>
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-        
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-    
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-
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   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.execute</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -201,6 +117,8 @@ <h1>Source code for spython.main.execute</h1><div class="highlight"><pre>
 <span class="sd">    nv: if True, load Nvidia Drivers in runtime (default False)</span>
 <span class="sd">    return_result: if True, return entire json object with return code</span>
 <span class="sd">                   and message result not (default)</span>
+<span class="sd">    quiet: Do not print verbose output.</span>
+<span class="sd">    environ: extra environment to add.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">check_install</span>
 
@@ -252,6 +170,10 @@ <h1>Source code for spython.main.execute</h1><div class="highlight"><pre>
 
         <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span> <span class="o">+</span> <span class="p">[</span><span class="n">image</span><span class="p">]</span> <span class="o">+</span> <span class="n">command</span>
 
+        <span class="c1"># Does the user want to see the command printed?</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span><span class="p">):</span>
+            <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
         <span class="k">if</span> <span class="ow">not</span> <span class="n">stream</span><span class="p">:</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_run_command</span><span class="p">(</span>
                 <span class="n">cmd</span><span class="p">,</span>
@@ -277,6 +199,7 @@ <h1>Source code for spython.main.execute</h1><div class="highlight"><pre>
     <span class="n">options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">singularity_options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+    <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
 <span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;shell into a container. A user is advised to use singularity to do</span>
 <span class="sd">    this directly, however this function is useful for supporting tools.</span>
@@ -325,6 +248,10 @@ <h1>Source code for spython.main.execute</h1><div class="highlight"><pre>
     <span class="n">cmd</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">image</span><span class="p">)</span>
     <span class="n">singularity</span> <span class="o">=</span> <span class="n">which</span><span class="p">(</span><span class="s2">&quot;singularity&quot;</span><span class="p">)</span>
 
+    <span class="c1"># Does the user want to see the command printed?</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span><span class="p">):</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
     <span class="k">if</span> <span class="n">writable</span> <span class="ow">or</span> <span class="n">sudo</span><span class="p">:</span>
         <span class="n">os</span><span class="o">.</span><span class="n">execvp</span><span class="p">(</span><span class="s2">&quot;sudo&quot;</span><span class="p">,</span> <span class="p">[</span><span class="s2">&quot;sudo&quot;</span><span class="p">]</span> <span class="o">+</span> <span class="n">cmd</span><span class="p">)</span>
 
@@ -333,49 +260,30 @@ <h1>Source code for spython.main.execute</h1><div class="highlight"><pre>
 </pre></div>
 
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-  
 
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   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
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-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-    
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-</footer>
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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 </html>
\ No newline at end of file
diff --git a/docs/api/modules/spython/main/export.html b/docs/api/modules/spython/main/export.html
deleted file mode 100644
index 6a2f0d51..00000000
--- a/docs/api/modules/spython/main/export.html
+++ /dev/null
@@ -1,324 +0,0 @@
-
-
-<!DOCTYPE html>
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-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
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-  
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-        
-          <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
-          <li><a href="../main.html">spython.main</a> &raquo;</li>
-        
-      <li>spython.main.export</li>
-    
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-           <div itemprop="articleBody">
-            
-  <h1>Source code for spython.main.export</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-
-<span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">bot</span>
-<span class="kn">import</span> <span class="nn">tempfile</span>
-<span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">os</span>
-
-
-<span class="k">def</span> <span class="nf">export</span><span class="p">(</span>
-    <span class="bp">self</span><span class="p">,</span>
-    <span class="n">image_path</span><span class="p">,</span>
-    <span class="n">pipe</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
-    <span class="n">output_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-    <span class="n">command</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-    <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
-    <span class="n">singularity_options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-<span class="p">):</span>
-
-    <span class="sd">&quot;&quot;&quot;export will export an image, sudo must be used. If we have Singularity</span>
-<span class="sd">    versions after 3, export is replaced with building into a sandbox.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ==========</span>
-<span class="sd">    image_path: full path to image</span>
-<span class="sd">    pipe: export to pipe and not file (default, False)</span>
-<span class="sd">    singularity_options: a list of options to provide to the singularity client</span>
-<span class="sd">    output_file: if pipe=False, export tar to this file. If not specified,</span>
-<span class="sd">    will generate temporary directory.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">check_install</span>
-
-    <span class="n">check_install</span><span class="p">()</span>
-
-    <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">()</span> <span class="ow">or</span> <span class="s2">&quot;2.6&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-
-        <span class="c1"># If export is deprecated, we run a build</span>
-        <span class="n">bot</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span>
-            <span class="s2">&quot;Export is not supported for Singularity 3.x. Building to sandbox instead.&quot;</span>
-        <span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">output_file</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">basename</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">image_path</span><span class="p">)</span>
-            <span class="n">output_file</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_get_filename</span><span class="p">(</span><span class="n">basename</span><span class="p">,</span> <span class="s2">&quot;sandbox&quot;</span><span class="p">,</span> <span class="n">pwd</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">build</span><span class="p">(</span>
-            <span class="n">recipe</span><span class="o">=</span><span class="n">image_path</span><span class="p">,</span>
-            <span class="n">image</span><span class="o">=</span><span class="n">output_file</span><span class="p">,</span>
-            <span class="n">sandbox</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
-            <span class="n">force</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
-            <span class="n">sudo</span><span class="o">=</span><span class="n">sudo</span><span class="p">,</span>
-            <span class="n">singularity_options</span><span class="o">=</span><span class="n">singularity_options</span><span class="p">,</span>
-        <span class="p">)</span>
-
-    <span class="c1"># If not version 3, run deprecated command</span>
-    <span class="k">elif</span> <span class="s2">&quot;2.5&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_export</span><span class="p">(</span>
-            <span class="n">image_path</span><span class="o">=</span><span class="n">image_path</span><span class="p">,</span>
-            <span class="n">pipe</span><span class="o">=</span><span class="n">pipe</span><span class="p">,</span>
-            <span class="n">output_file</span><span class="o">=</span><span class="n">output_file</span><span class="p">,</span>
-            <span class="n">command</span><span class="o">=</span><span class="n">command</span><span class="p">,</span>
-            <span class="n">singularity_options</span><span class="o">=</span><span class="n">singularity_options</span><span class="p">,</span>
-        <span class="p">)</span>
-
-    <span class="n">bot</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="s2">&quot;Unsupported version of Singularity, </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">())</span>
-
-
-<span class="k">def</span> <span class="nf">_export</span><span class="p">(</span>
-    <span class="bp">self</span><span class="p">,</span>
-    <span class="n">image_path</span><span class="p">,</span>
-    <span class="n">pipe</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
-    <span class="n">output_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-    <span class="n">command</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-    <span class="n">singularity_options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-<span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;the older deprecated function, running export for previous</span>
-<span class="sd">        versions of Singularity that support it</span>
-
-<span class="sd">    USAGE: singularity [...] export [export options...] &lt;container path&gt;</span>
-<span class="sd">    Export will dump a tar stream of the container image contents to standard</span>
-<span class="sd">    out (stdout).</span>
-<span class="sd">    note: This command must be executed as root.</span>
-<span class="sd">    EXPORT OPTIONS:</span>
-<span class="sd">        -f/--file       Output to a file instead of a pipe</span>
-<span class="sd">           --command    Replace the tar command (DEFAULT: &#39;tar cf - .&#39;)</span>
-<span class="sd">    EXAMPLES:</span>
-<span class="sd">        $ sudo singularity export /tmp/Debian.img &gt; /tmp/Debian.tar</span>
-<span class="sd">        $ sudo singularity export /tmp/Debian.img | gzip -9 &gt; /tmp/Debian.tar.gz</span>
-<span class="sd">        $ sudo singularity export -f Debian.tar /tmp/Debian.img</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">sudo</span> <span class="o">=</span> <span class="kc">True</span>
-    <span class="n">cmd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_init_command</span><span class="p">(</span><span class="s2">&quot;export&quot;</span><span class="p">,</span> <span class="n">singularity_options</span><span class="p">)</span>
-
-    <span class="c1"># If the user has specified export to pipe, we don&#39;t need a file</span>
-    <span class="k">if</span> <span class="n">pipe</span><span class="p">:</span>
-        <span class="n">cmd</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">image_path</span><span class="p">)</span>
-
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">_</span><span class="p">,</span> <span class="n">tmptar</span> <span class="o">=</span> <span class="n">tempfile</span><span class="o">.</span><span class="n">mkstemp</span><span class="p">(</span><span class="n">suffix</span><span class="o">=</span><span class="s2">&quot;.tar&quot;</span><span class="p">)</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">tmptar</span><span class="p">)</span>
-        <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span> <span class="o">+</span> <span class="p">[</span><span class="s2">&quot;-f&quot;</span><span class="p">,</span> <span class="n">tmptar</span><span class="p">,</span> <span class="n">image_path</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="n">sudo</span><span class="p">)</span>
-
-        <span class="c1"># Was there an error?</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">tmptar</span><span class="p">):</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Error generating image tar&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="kc">None</span>
-
-        <span class="c1"># if user has specified output file, move it there, return path</span>
-        <span class="k">if</span> <span class="n">output_file</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">shutil</span><span class="o">.</span><span class="n">copyfile</span><span class="p">(</span><span class="n">tmptar</span><span class="p">,</span> <span class="n">output_file</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">output_file</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">tmptar</span>
-
-    <span class="c1"># Otherwise, return output of pipe</span>
-    <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="n">sudo</span><span class="p">)</span>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
-  </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
-
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-  <script type="text/javascript">
-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
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diff --git a/docs/api/modules/spython/main/help.html b/docs/api/modules/spython/main/help.html
index a6a90a22..b7080823 100644
--- a/docs/api/modules/spython/main/help.html
+++ b/docs/api/modules/spython/main/help.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.help &mdash; Singularity Python API 1 documentation</title>
-  
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-  
-  <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
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+      <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
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   <![endif]-->
   
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-      <script type="text/javascript" id="documentation_options" data-url_root="../../../" src="../../../assets/documentation_options.js"></script>
+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
         <script src="../../../assets/underscore.js"></script>
         <script src="../../../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../../../assets/js/theme.js"></script>
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+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
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+<body class="wy-body-for-nav"> 
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-    
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-          
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-            <a href="../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -71,87 +36,38 @@
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
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-        
           <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
           <li><a href="../main.html">spython.main</a> &raquo;</li>
-        
       <li>spython.main.help</li>
-    
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       <li class="wy-breadcrumbs-aside">
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   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.help</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -177,49 +93,30 @@ <h1>Source code for spython.main.help</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
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-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
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diff --git a/docs/api/modules/spython/main/inspect.html b/docs/api/modules/spython/main/inspect.html
index b41172b6..8ec024fa 100644
--- a/docs/api/modules/spython/main/inspect.html
+++ b/docs/api/modules/spython/main/inspect.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.inspect &mdash; Singularity Python API 1 documentation</title>
-  
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-  
-  <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
-
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+      <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
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-      <script type="text/javascript" id="documentation_options" data-url_root="../../../" src="../../../assets/documentation_options.js"></script>
+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
         <script src="../../../assets/underscore.js"></script>
         <script src="../../../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../../../assets/js/theme.js"></script>
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+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
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+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
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-          
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-          
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -71,87 +36,38 @@
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   </form>
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
           <li><a href="../main.html">spython.main</a> &raquo;</li>
-        
       <li>spython.main.inspect</li>
-    
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       <li class="wy-breadcrumbs-aside">
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-
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   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.inspect</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -191,13 +107,7 @@ <h1>Source code for spython.main.inspect</h1><div class="highlight"><pre>
     <span class="k">if</span> <span class="n">app</span><span class="p">:</span>
         <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span> <span class="o">+</span> <span class="p">[</span><span class="s2">&quot;--app&quot;</span><span class="p">,</span> <span class="n">app</span><span class="p">]</span>
 
-    <span class="n">options</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;e&quot;</span><span class="p">,</span> <span class="s2">&quot;d&quot;</span><span class="p">,</span> <span class="s2">&quot;l&quot;</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">,</span> <span class="s2">&quot;hf&quot;</span><span class="p">,</span> <span class="s2">&quot;t&quot;</span><span class="p">]</span>
-
-    <span class="c1"># After Singularity 3.0, helpfile was changed to H from</span>
-
-    <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-        <span class="n">options</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;e&quot;</span><span class="p">,</span> <span class="s2">&quot;d&quot;</span><span class="p">,</span> <span class="s2">&quot;l&quot;</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">,</span> <span class="s2">&quot;H&quot;</span><span class="p">,</span> <span class="s2">&quot;t&quot;</span><span class="p">]</span>
-
+    <span class="n">options</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;e&quot;</span><span class="p">,</span> <span class="s2">&quot;d&quot;</span><span class="p">,</span> <span class="s2">&quot;l&quot;</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">,</span> <span class="s2">&quot;H&quot;</span><span class="p">,</span> <span class="s2">&quot;t&quot;</span><span class="p">]</span>
     <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">options</span><span class="p">:</span>
         <span class="n">cmd</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;-</span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">x</span><span class="p">)</span>
 
@@ -205,6 +115,11 @@ <h1>Source code for spython.main.inspect</h1><div class="highlight"><pre>
         <span class="n">cmd</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">&quot;--json&quot;</span><span class="p">)</span>
 
     <span class="n">cmd</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">image</span><span class="p">)</span>
+
+    <span class="c1"># Does the user want to see the command printed?</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span><span class="p">):</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
     <span class="n">result</span> <span class="o">=</span> <span class="n">run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="n">quiet</span><span class="p">)</span>
 
     <span class="k">if</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;return_code&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
@@ -244,49 +159,30 @@ <h1>Source code for spython.main.inspect</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
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-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
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-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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diff --git a/docs/api/modules/spython/main/instances.html b/docs/api/modules/spython/main/instances.html
index bf0850d2..cb7fe810 100644
--- a/docs/api/modules/spython/main/instances.html
+++ b/docs/api/modules/spython/main/instances.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.instances &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
-
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+      <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../../../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
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+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
         <script src="../../../assets/underscore.js"></script>
         <script src="../../../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../../../assets/js/theme.js"></script>
-
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+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
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+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
           </a>
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -71,87 +36,38 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
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-        </div>
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
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               <ul>
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 </ul>
 
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-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
           <li><a href="../main.html">spython.main</a> &raquo;</li>
-        
       <li>spython.main.instances</li>
-    
-    
       <li class="wy-breadcrumbs-aside">
-        
       </li>
-    
   </ul>
-
-  
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.instances</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -198,16 +114,16 @@ <h1>Source code for spython.main.instances</h1><div class="highlight"><pre>
     <span class="n">check_install</span><span class="p">()</span>
 
     <span class="n">subgroup</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;instance&quot;</span><span class="p">,</span> <span class="s2">&quot;list&quot;</span><span class="p">,</span> <span class="s2">&quot;--json&quot;</span><span class="p">]</span>
-
-    <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-        <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;This version of Singularity Python does not support &lt; 3.0.&quot;</span><span class="p">)</span>
-
     <span class="n">cmd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_init_command</span><span class="p">(</span><span class="n">subgroup</span><span class="p">,</span> <span class="n">singularity_options</span><span class="p">)</span>
 
     <span class="c1"># If the user has provided a name, we want to see a particular instance</span>
     <span class="k">if</span> <span class="n">name</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
         <span class="n">cmd</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
 
+    <span class="c1"># Does the user want to see the command printed?</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span><span class="p">):</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
     <span class="n">output</span> <span class="o">=</span> <span class="n">run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="n">sudo</span><span class="p">,</span> <span class="n">sudo_options</span><span class="o">=</span><span class="n">sudo_options</span><span class="p">)</span>
     <span class="n">instances</span> <span class="o">=</span> <span class="p">[]</span>
 
@@ -230,12 +146,12 @@ <h1>Source code for spython.main.instances</h1><div class="highlight"><pre>
 
                 <span class="c1"># Otherwise, add instances to the listing</span>
                 <span class="n">new_instance</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">instance</span><span class="p">(</span>
-                    <span class="n">pid</span><span class="o">=</span><span class="n">i</span><span class="p">[</span><span class="s2">&quot;pid&quot;</span><span class="p">],</span>
-                    <span class="n">ip_address</span><span class="o">=</span><span class="n">i</span><span class="p">[</span><span class="s2">&quot;ip&quot;</span><span class="p">],</span>
-                    <span class="n">name</span><span class="o">=</span><span class="n">i</span><span class="p">[</span><span class="s2">&quot;instance&quot;</span><span class="p">],</span>
-                    <span class="n">log_err_path</span><span class="o">=</span><span class="n">i</span><span class="p">[</span><span class="s2">&quot;logErrPath&quot;</span><span class="p">],</span>
-                    <span class="n">log_out_path</span><span class="o">=</span><span class="n">i</span><span class="p">[</span><span class="s2">&quot;logOutPath&quot;</span><span class="p">],</span>
-                    <span class="n">image</span><span class="o">=</span><span class="n">i</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;img&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">),</span>
+                    <span class="n">pid</span><span class="o">=</span><span class="n">i</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;pid&quot;</span><span class="p">),</span>
+                    <span class="n">ip_address</span><span class="o">=</span><span class="n">i</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;ip&quot;</span><span class="p">),</span>
+                    <span class="n">name</span><span class="o">=</span><span class="n">i</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;instance&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">i</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;daemon_name&quot;</span><span class="p">),</span>
+                    <span class="n">log_err_path</span><span class="o">=</span><span class="n">i</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;logErrPath&quot;</span><span class="p">),</span>
+                    <span class="n">log_out_path</span><span class="o">=</span><span class="n">i</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;logOutPath&quot;</span><span class="p">),</span>
+                    <span class="n">image</span><span class="o">=</span><span class="n">i</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;img&quot;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">i</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;container_image&quot;</span><span class="p">),</span>
                     <span class="n">start</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                 <span class="p">)</span>
 
@@ -279,6 +195,11 @@ <h1>Source code for spython.main.instances</h1><div class="highlight"><pre>
 
     <span class="n">cmd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_init_command</span><span class="p">(</span><span class="n">subgroup</span><span class="p">,</span> <span class="n">singularity_options</span><span class="p">)</span>
     <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span> <span class="o">+</span> <span class="p">[</span><span class="s2">&quot;--all&quot;</span><span class="p">]</span>
+
+    <span class="c1"># Does the user want to see the command printed?</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span><span class="p">):</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
     <span class="n">output</span> <span class="o">=</span> <span class="n">run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="n">sudo</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="n">quiet</span><span class="p">)</span>
 
     <span class="k">if</span> <span class="n">output</span><span class="p">[</span><span class="s2">&quot;return_code&quot;</span><span class="p">]</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
@@ -290,49 +211,30 @@ <h1>Source code for spython.main.instances</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
-
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-
   </div>
-  
-
-  <script type="text/javascript">
+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
-  </script>
-
-  
-  
-    
-   
+  </script> 
 
 </body>
 </html>
\ No newline at end of file
diff --git a/docs/api/modules/spython/main/parse/recipe.html b/docs/api/modules/spython/main/parse/recipe.html
index 37eac738..48528276 100644
--- a/docs/api/modules/spython/main/parse/recipe.html
+++ b/docs/api/modules/spython/main/parse/recipe.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.parse.recipe &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../../assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
-  
+      <link rel="stylesheet" href="../../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../../../../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../../../" src="../../../../assets/documentation_options.js"></script>
+        <script data-url_root="../../../../" id="documentation_options" src="../../../../assets/documentation_options.js"></script>
         <script src="../../../../assets/jquery.js"></script>
         <script src="../../../../assets/underscore.js"></script>
         <script src="../../../../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../../../../assets/js/theme.js"></script>
-
-    
+    <script src="../../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="../../../../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
-          
-            
-            
               <div class="version">
                 0.0
               </div>
-            
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-          
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -71,95 +36,47 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
-          
-        </div>
-
-        
-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-          
-            
-            
-              
-            
-            
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../../source/spython.html">spython package</a></li>
 </ul>
 
-            
-          
         </div>
-        
       </div>
     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
-
-      
-      <nav class="wy-nav-top" aria-label="top navigation">
-        
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
           <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
           <a href="../../../../index.html">Singularity Python API</a>
-        
       </nav>
 
-
       <div class="wy-nav-content">
-        
         <div class="rst-content">
-        
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-
-
-
-
-
-
-
-
-
-
-<div role="navigation" aria-label="breadcrumbs navigation">
-
+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="../../../index.html">Module code</a> &raquo;</li>
-        
           <li><a href="../../main.html">spython.main</a> &raquo;</li>
-        
       <li>spython.main.parse.recipe</li>
-    
-    
       <li class="wy-breadcrumbs-aside">
-        
       </li>
-    
   </ul>
-
-  
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.parse.recipe</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
 <span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
 
 
-<div class="viewcode-block" id="Recipe"><a class="viewcode-back" href="../../../../source/spython.main.parse.html#spython.main.parse.recipe.Recipe">[docs]</a><span class="k">class</span> <span class="nc">Recipe</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;a recipe includes an environment, labels, runscript or command,</span>
+<div class="viewcode-block" id="Recipe"><a class="viewcode-back" href="../../../../source/spython.main.parse.html#spython.main.parse.recipe.Recipe">[docs]</a><span class="k">class</span> <span class="nc">Recipe</span><span class="p">:</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    a recipe includes an environment, labels, runscript or command,</span>
 <span class="sd">    and install sequence. This object is interacted with by a Parser</span>
 <span class="sd">    (intended to popualte the recipe with content) and a Writer (intended</span>
 <span class="sd">    to write a recipe to file). The parsers and writers are located in</span>
@@ -244,49 +161,30 @@ <h1>Source code for spython.main.parse.recipe</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
-
     </section>
-
   </div>
-  
-
-  <script type="text/javascript">
+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
-  </script>
-
-  
-  
-    
-   
+  </script> 
 
 </body>
 </html>
\ No newline at end of file
diff --git a/docs/api/modules/spython/main/pull.html b/docs/api/modules/spython/main/pull.html
index a7768424..4c65f2b8 100644
--- a/docs/api/modules/spython/main/pull.html
+++ b/docs/api/modules/spython/main/pull.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.pull &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
-  
+      <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../../../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../../" src="../../../assets/documentation_options.js"></script>
+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
         <script src="../../../assets/underscore.js"></script>
         <script src="../../../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../../../assets/js/theme.js"></script>
-
-    
+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
-          
-            
-            
               <div class="version">
                 0.0
               </div>
-            
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-          
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -71,87 +36,38 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
-          
-        </div>
-
-        
-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-          
-            
-            
-              
-            
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../source/spython.html">spython package</a></li>
 </ul>
 
-            
-          
         </div>
-        
       </div>
     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
-
-      
-      <nav class="wy-nav-top" aria-label="top navigation">
-        
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
           <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
           <a href="../../../index.html">Singularity Python API</a>
-        
       </nav>
 
-
       <div class="wy-nav-content">
-        
         <div class="rst-content">
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-
-<div role="navigation" aria-label="breadcrumbs navigation">
-
+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
           <li><a href="../main.html">spython.main</a> &raquo;</li>
-        
       <li>spython.main.pull</li>
-    
-    
       <li class="wy-breadcrumbs-aside">
-        
       </li>
-    
   </ul>
-
-  
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.pull</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span></span><span class="c1"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="c1"># This Source Code Form is subject to the terms of the</span>
 <span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -169,7 +85,7 @@ <h1>Source code for spython.main.pull</h1><div class="highlight"><pre>
     <span class="n">image</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">name</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">pull_folder</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span>
-    <span class="n">ext</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">ext</span><span class="o">=</span><span class="s2">&quot;sif&quot;</span><span class="p">,</span>
     <span class="n">force</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
     <span class="n">capture</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
     <span class="n">stream</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
@@ -201,9 +117,6 @@ <h1>Source code for spython.main.pull</h1><div class="highlight"><pre>
     <span class="c1"># Quiet is honored if set by the client, or user</span>
     <span class="n">quiet</span> <span class="o">=</span> <span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span>
 
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">ext</span><span class="p">:</span>
-        <span class="n">ext</span> <span class="o">=</span> <span class="s2">&quot;sif&quot;</span> <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">()</span> <span class="k">else</span> <span class="s2">&quot;simg&quot;</span>
-
     <span class="c1"># No image provided, default to use the client&#39;s loaded image</span>
     <span class="k">if</span> <span class="n">image</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
         <span class="n">image</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_get_uri</span><span class="p">()</span>
@@ -213,8 +126,8 @@ <h1>Source code for spython.main.pull</h1><div class="highlight"><pre>
         <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;You must provide an image uri, or use client.load() first.&quot;</span><span class="p">)</span>
 
     <span class="c1"># Singularity Only supports shub, docker and library pull</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s2">&quot;^(shub|docker|library)://&quot;</span><span class="p">,</span> <span class="n">image</span><span class="p">):</span>
-        <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;pull only valid for docker, shub and library. Use sregistry client.&quot;</span><span class="p">)</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s2">&quot;^(shub|docker|library|https|oras)://&quot;</span><span class="p">,</span> <span class="n">image</span><span class="p">):</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;pull only valid for docker, oras, https, shub and library.&quot;</span><span class="p">)</span>
 
     <span class="c1"># If we still don&#39;t have a custom name, base off of image uri.</span>
     <span class="k">if</span> <span class="n">name</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
@@ -225,9 +138,8 @@ <h1>Source code for spython.main.pull</h1><div class="highlight"><pre>
 
         <span class="c1"># Regression Singularity 3.* onward, PULLFOLDER not honored</span>
         <span class="c1"># https://github.com/sylabs/singularity/issues/2788</span>
-        <span class="k">if</span> <span class="s2">&quot;version 3&quot;</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">version</span><span class="p">():</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="n">final_image</span>
-            <span class="n">pull_folder</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># Don&#39;t use pull_folder</span>
+        <span class="n">name</span> <span class="o">=</span> <span class="n">final_image</span>
+        <span class="n">pull_folder</span> <span class="o">=</span> <span class="kc">None</span>  <span class="c1"># Don&#39;t use pull_folder</span>
     <span class="k">else</span><span class="p">:</span>
         <span class="n">final_image</span> <span class="o">=</span> <span class="n">name</span>
 
@@ -248,7 +160,9 @@ <h1>Source code for spython.main.pull</h1><div class="highlight"><pre>
 
         <span class="c1"># Option 3: A custom name we can predict (not commit/hash) and can also show</span>
         <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">final_image</span><span class="p">,</span> <span class="n">stream_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
+
+            <span class="c1"># As of Singularity 3.x (at least 3.8) output goes to stderr</span>
+            <span class="k">return</span> <span class="n">final_image</span><span class="p">,</span> <span class="n">stream_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">output_type</span><span class="o">=</span><span class="s2">&quot;stderr&quot;</span><span class="p">)</span>
 
     <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">final_image</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">quiet</span><span class="p">:</span>
         <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="n">final_image</span><span class="p">)</span>
@@ -256,49 +170,30 @@ <h1>Source code for spython.main.pull</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
-
     </section>
-
   </div>
-  
-
-  <script type="text/javascript">
+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
-  </script>
-
-  
-  
-    
-   
+  </script> 
 
 </body>
 </html>
\ No newline at end of file
diff --git a/docs/api/modules/spython/main/run.html b/docs/api/modules/spython/main/run.html
index 5fe202dc..9b335f85 100644
--- a/docs/api/modules/spython/main/run.html
+++ b/docs/api/modules/spython/main/run.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.run &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
-  
+      <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../../../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../../" src="../../../assets/documentation_options.js"></script>
+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
         <script src="../../../assets/underscore.js"></script>
         <script src="../../../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../../../assets/js/theme.js"></script>
-
-    
+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
-          
-            
-            
               <div class="version">
                 0.0
               </div>
-            
-          
-
-          
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -71,85 +36,36 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
-          
-        </div>
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-          
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../source/spython.html">spython package</a></li>
 </ul>
 
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         </div>
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     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
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-      <nav class="wy-nav-top" aria-label="top navigation">
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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           <a href="../../../index.html">Singularity Python API</a>
-        
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-        
         <div class="rst-content">
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-
-
-
-<div role="navigation" aria-label="breadcrumbs navigation">
-
+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
           <li><a href="../main.html">spython.main</a> &raquo;</li>
-        
       <li>spython.main.run</li>
-    
-    
       <li class="wy-breadcrumbs-aside">
-        
       </li>
-    
   </ul>
-
-  
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.main.run</h1><div class="highlight"><pre>
 <span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
 
@@ -177,6 +93,7 @@ <h1>Source code for spython.main.run</h1><div class="highlight"><pre>
     <span class="n">options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">singularity_options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
     <span class="n">return_result</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+    <span class="n">quiet</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
 <span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    run will run the container, with or withour arguments (which</span>
@@ -199,7 +116,7 @@ <h1>Source code for spython.main.run</h1><div class="highlight"><pre>
 <span class="sd">    nv: if True, load Nvidia Drivers in runtime (default False)</span>
 <span class="sd">    return_result: if True, return entire json object with return code</span>
 <span class="sd">         and message result (default is False)</span>
-
+<span class="sd">    quiet: print the command to the user</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">check_install</span>
 
@@ -207,6 +124,9 @@ <h1>Source code for spython.main.run</h1><div class="highlight"><pre>
 
     <span class="n">cmd</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_init_command</span><span class="p">(</span><span class="s2">&quot;run&quot;</span><span class="p">,</span> <span class="n">singularity_options</span><span class="p">)</span>
 
+    <span class="c1"># Does the user want to see the command printed?</span>
+    <span class="n">quiet</span> <span class="o">=</span> <span class="n">quiet</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span>
+
     <span class="c1"># nv option leverages any GPU cards</span>
     <span class="k">if</span> <span class="n">nv</span><span class="p">:</span>
         <span class="n">cmd</span> <span class="o">+=</span> <span class="p">[</span><span class="s2">&quot;--nv&quot;</span><span class="p">]</span>
@@ -246,6 +166,9 @@ <h1>Source code for spython.main.run</h1><div class="highlight"><pre>
             <span class="n">args</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">)</span>
         <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span> <span class="o">+</span> <span class="n">args</span>
 
+    <span class="k">if</span> <span class="ow">not</span> <span class="n">quiet</span><span class="p">:</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
     <span class="k">if</span> <span class="ow">not</span> <span class="n">stream</span><span class="p">:</span>
         <span class="n">result</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="n">sudo</span><span class="p">,</span> <span class="n">return_result</span><span class="o">=</span><span class="n">return_result</span><span class="p">)</span>
     <span class="k">else</span><span class="p">:</span>
@@ -267,49 +190,30 @@ <h1>Source code for spython.main.run</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
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-  
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+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
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+  </script> 
 
 </body>
 </html>
\ No newline at end of file
diff --git a/docs/api/modules/spython/oci.html b/docs/api/modules/spython/oci.html
deleted file mode 100644
index a6d2d272..00000000
--- a/docs/api/modules/spython/oci.html
+++ /dev/null
@@ -1,335 +0,0 @@
-
-
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
-  <title>spython.oci &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../assets/pygments.css" type="text/css" />
-
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-  <!--[if lt IE 9]>
-    <script src="../../assets/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../" src="../../assets/documentation_options.js"></script>
-        <script src="../../assets/jquery.js"></script>
-        <script src="../../assets/underscore.js"></script>
-        <script src="../../assets/doctools.js"></script>
-    
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-    <link rel="search" title="Search" href="../../search.html" /> 
-</head>
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-<body class="wy-body-for-nav">
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-    <input type="text" name="q" placeholder="Search docs" />
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-<li class="toctree-l1"><a class="reference internal" href="../../source/spython.html">spython package</a></li>
-</ul>
-
-            
-          
-        </div>
-        
-      </div>
-    </nav>
-
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
-
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-      <nav class="wy-nav-top" aria-label="top navigation">
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-          <a href="../../index.html">Singularity Python API</a>
-        
-      </nav>
-
-
-      <div class="wy-nav-content">
-        
-        <div class="rst-content">
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-
-
-<div role="navigation" aria-label="breadcrumbs navigation">
-
-  <ul class="wy-breadcrumbs">
-    
-      <li><a href="../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
-          <li><a href="../index.html">Module code</a> &raquo;</li>
-        
-      <li>spython.oci</li>
-    
-    
-      <li class="wy-breadcrumbs-aside">
-        
-      </li>
-    
-  </ul>
-
-  
-  <hr/>
-</div>
-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-            
-  <h1>Source code for spython.oci</h1><div class="highlight"><pre>
-<span></span><span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-<span class="kn">from</span> <span class="nn">spython.image</span> <span class="kn">import</span> <span class="n">ImageBase</span>
-<span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">bot</span>
-
-
-<span class="k">class</span> <span class="nc">OciImage</span><span class="p">(</span><span class="n">ImageBase</span><span class="p">):</span>
-
-    <span class="c1"># Default functions of client don&#39;t use sudo</span>
-    <span class="n">sudo</span> <span class="o">=</span> <span class="kc">False</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span>
-        <span class="bp">self</span><span class="p">,</span> <span class="n">container_id</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">bundle</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">create</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span>
-    <span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;An Oci Image is an Image Base with OCI functions appended</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ==========</span>
-<span class="sd">        container_id: image uri to parse (required)</span>
-<span class="sd">        bundle: a bundle directory to create a container from.</span>
-<span class="sd">                the bundle should have a config.json at the root</span>
-<span class="sd">        create: if the bundle is provided, create a container (default True)</span>
-<span class="sd">        sudo: if init is called with or without sudo, keep a record and use</span>
-<span class="sd">              for following commands unless sudo is provided to function.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">super</span><span class="p">(</span><span class="n">OciImage</span><span class="p">,</span> <span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__init__</span><span class="p">()</span>
-
-        <span class="c1"># Will typically be None, unless used outside of Client</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">container_id</span> <span class="o">=</span> <span class="n">container_id</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">protocol</span> <span class="o">=</span> <span class="s2">&quot;oci&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sudo</span> <span class="o">=</span> <span class="n">sudo</span>
-
-        <span class="c1"># If bundle is provided, create it</span>
-        <span class="k">if</span> <span class="n">bundle</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">container_id</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">create</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">bundle</span> <span class="o">=</span> <span class="n">bundle</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">bundle</span><span class="p">,</span> <span class="n">container_id</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="c1"># Unique resource identifier</span>
-
-    <span class="k">def</span> <span class="nf">get_container_id</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">container_id</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;a helper function shared between functions that will return a</span>
-<span class="sd">        container_id. First preference goes to a container_id provided by</span>
-<span class="sd">        the user at runtime. Second preference goes to the container_id</span>
-<span class="sd">        instantiated with the client.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ==========</span>
-<span class="sd">        container_id: image uri to parse (required)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="c1"># The user must provide a container_id, or have one with the client</span>
-        <span class="k">if</span> <span class="n">container_id</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">container_id</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;You must provide a container_id.&quot;</span><span class="p">)</span>
-
-        <span class="c1"># Choose whichever is not None, with preference for function provided</span>
-        <span class="n">container_id</span> <span class="o">=</span> <span class="n">container_id</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">container_id</span>
-        <span class="k">return</span> <span class="n">container_id</span>
-
-    <span class="k">def</span> <span class="nf">get_uri</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;return the image uri (oci://) along with it&#39;s name&quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__str__</span><span class="p">()</span>
-
-    <span class="c1"># Naming</span>
-
-    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">container_id</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">return</span> <span class="s2">&quot;[singularity-python-oci:</span><span class="si">%s</span><span class="s2">]&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">container_id</span>
-        <span class="k">return</span> <span class="s2">&quot;[singularity-python-oci]&quot;</span>
-
-    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__str__</span><span class="p">()</span>
-
-    <span class="c1"># Commands</span>
-
-    <span class="k">def</span> <span class="nf">_get_sudo</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;if the client was initialized with sudo, remember this choice for</span>
-<span class="sd">        later communication with the Oci Images. However, if the user provides</span>
-<span class="sd">        a sudo argument (True or False) and not the default None, take</span>
-<span class="sd">        preference to this argument.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ==========</span>
-<span class="sd">        sudo: if None, use self.sudo. Otherwise return sudo.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">sudo</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">sudo</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sudo</span>
-        <span class="k">return</span> <span class="n">sudo</span>
-
-    <span class="k">def</span> <span class="nf">_run_and_return</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Run a command, show the message to the user if quiet isn&#39;t set,</span>
-<span class="sd">        and return the return code. This is a wrapper for the OCI client</span>
-<span class="sd">        to run a command and easily return the return code value (what</span>
-<span class="sd">        the user is ultimately interested in).</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ==========</span>
-<span class="sd">        cmd: the command (list) to run.</span>
-<span class="sd">        sudo: whether to add sudo or not.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">sudo</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_get_sudo</span><span class="p">(</span><span class="n">sudo</span><span class="p">)</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="n">sudo</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">return_result</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-
-        <span class="c1"># Successful return with no output</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">result</span><span class="p">:</span>
-            <span class="k">return</span>
-
-        <span class="c1"># Show the response to the user, only if not quiet.</span>
-        <span class="k">elif</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">quiet</span><span class="p">:</span>
-            <span class="n">bot</span><span class="o">.</span><span class="n">println</span><span class="p">(</span><span class="n">result</span><span class="p">[</span><span class="s2">&quot;message&quot;</span><span class="p">])</span>
-
-        <span class="c1"># Return the state object to the user</span>
-        <span class="k">return</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;return_code&quot;</span><span class="p">]</span>
-
-    <span class="k">def</span> <span class="nf">_init_command</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">action</span><span class="p">,</span> <span class="n">flags</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;a wrapper to the base init_command, ensuring that &quot;oci&quot; is added</span>
-<span class="sd">        to each command</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ==========</span>
-<span class="sd">        action: the main action to perform (e.g., build)</span>
-<span class="sd">        flags: one or more additional flags (e.g, volumes)</span>
-<span class="sd">               not implemented yet.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="kn">from</span> <span class="nn">spython.main.base.command</span> <span class="kn">import</span> <span class="n">init_command</span>
-
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">action</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="n">action</span> <span class="o">=</span> <span class="p">[</span><span class="n">action</span><span class="p">]</span>
-        <span class="n">cmd</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;oci&quot;</span><span class="p">]</span> <span class="o">+</span> <span class="n">action</span>
-        <span class="k">return</span> <span class="n">init_command</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cmd</span><span class="p">,</span> <span class="n">flags</span><span class="p">)</span>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
-  </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
-
-</footer>
-
-        </div>
-      </div>
-
-    </section>
-
-  </div>
-  
-
-  <script type="text/javascript">
-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
-  </script>
-
-  
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-</body>
-</html>
\ No newline at end of file
diff --git a/docs/api/modules/spython/tests/test_client.html b/docs/api/modules/spython/tests/test_client.html
deleted file mode 100644
index b85c07ed..00000000
--- a/docs/api/modules/spython/tests/test_client.html
+++ /dev/null
@@ -1,289 +0,0 @@
-
-
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
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-  
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-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
-
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-  <!--[if lt IE 9]>
-    <script src="../../../assets/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
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-<li class="toctree-l1"><a class="reference internal" href="../../../source/spython.html">spython package</a></li>
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-    
-      <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
-          <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
-      <li>spython.tests.test_client</li>
-    
-    
-      <li class="wy-breadcrumbs-aside">
-        
-      </li>
-    
-  </ul>
-
-  
-  <hr/>
-</div>
-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-            
-  <h1>Source code for spython.tests.test_client</h1><div class="highlight"><pre>
-<span></span><span class="ch">#!/usr/bin/python</span>
-
-<span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-<span class="kn">from</span> <span class="nn">spython.main</span> <span class="kn">import</span> <span class="n">Client</span>
-<span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">write_file</span>
-<span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">pytest</span>
-<span class="kn">from</span> <span class="nn">subprocess</span> <span class="kn">import</span> <span class="n">CalledProcessError</span>
-
-
-<div class="viewcode-block" id="test_build_from_docker"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_client.test_build_from_docker">[docs]</a><span class="k">def</span> <span class="nf">test_build_from_docker</span><span class="p">(</span><span class="n">tmp_path</span><span class="p">):</span>
-    <span class="n">container</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">tmp_path</span> <span class="o">/</span> <span class="s2">&quot;container.sif&quot;</span><span class="p">)</span>
-
-    <span class="n">created_container</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">build</span><span class="p">(</span>
-        <span class="s2">&quot;docker://busybox:1.30.1&quot;</span><span class="p">,</span> <span class="n">image</span><span class="o">=</span><span class="n">container</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span>
-    <span class="p">)</span>
-    <span class="k">assert</span> <span class="n">created_container</span> <span class="o">==</span> <span class="n">container</span>
-    <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">created_container</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_export"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_client.test_export">[docs]</a><span class="k">def</span> <span class="nf">test_export</span><span class="p">():</span>
-    <span class="n">sandbox</span> <span class="o">=</span> <span class="s2">&quot;busybox:1.30.sandbox&quot;</span>
-    <span class="n">created_sandbox</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">export</span><span class="p">(</span><span class="s2">&quot;docker://busybox:1.30.1&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">created_sandbox</span> <span class="o">==</span> <span class="n">sandbox</span>
-    <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">created_sandbox</span><span class="p">)</span>
-    <span class="n">shutil</span><span class="o">.</span><span class="n">rmtree</span><span class="p">(</span><span class="n">created_sandbox</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_docker_pull"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_client.test_docker_pull">[docs]</a><span class="k">def</span> <span class="nf">test_docker_pull</span><span class="p">(</span><span class="n">docker_container</span><span class="p">):</span>
-    <span class="n">tmp_path</span><span class="p">,</span> <span class="n">container</span> <span class="o">=</span> <span class="n">docker_container</span>
-    <span class="nb">print</span><span class="p">(</span><span class="n">container</span><span class="p">)</span>
-    <span class="n">ext</span> <span class="o">=</span> <span class="s2">&quot;sif&quot;</span> <span class="k">if</span> <span class="n">Client</span><span class="o">.</span><span class="n">version_info</span><span class="p">()</span><span class="o">.</span><span class="n">major</span> <span class="o">&gt;=</span> <span class="mi">3</span> <span class="k">else</span> <span class="s2">&quot;simg&quot;</span>
-    <span class="k">assert</span> <span class="n">container</span> <span class="o">==</span> <span class="nb">str</span><span class="p">(</span><span class="n">tmp_path</span> <span class="o">/</span> <span class="p">(</span><span class="s2">&quot;busybox:1.30.1.&quot;</span> <span class="o">+</span> <span class="n">ext</span><span class="p">))</span>
-    <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">container</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_execute"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_client.test_execute">[docs]</a><span class="k">def</span> <span class="nf">test_execute</span><span class="p">(</span><span class="n">docker_container</span><span class="p">):</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span><span class="n">docker_container</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s2">&quot;ls /&quot;</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="s2">&quot;tmp</span><span class="se">\n</span><span class="s2">usr</span><span class="se">\n</span><span class="s2">var&quot;</span> <span class="ow">in</span> <span class="n">result</span></div>
-
-
-<div class="viewcode-block" id="test_execute_with_return_code"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_client.test_execute_with_return_code">[docs]</a><span class="k">def</span> <span class="nf">test_execute_with_return_code</span><span class="p">(</span><span class="n">docker_container</span><span class="p">):</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span><span class="n">docker_container</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s2">&quot;ls /&quot;</span><span class="p">,</span> <span class="n">return_result</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="s2">&quot;tmp</span><span class="se">\n</span><span class="s2">usr</span><span class="se">\n</span><span class="s2">var&quot;</span> <span class="ow">in</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;message&quot;</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;return_code&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span></div>
-
-
-<div class="viewcode-block" id="test_execute_with_called_process_error"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_client.test_execute_with_called_process_error">[docs]</a><span class="nd">@pytest</span><span class="o">.</span><span class="n">mark</span><span class="o">.</span><span class="n">parametrize</span><span class="p">(</span><span class="s2">&quot;return_code&quot;</span><span class="p">,</span> <span class="p">[</span><span class="kc">True</span><span class="p">,</span> <span class="kc">False</span><span class="p">])</span>
-<span class="k">def</span> <span class="nf">test_execute_with_called_process_error</span><span class="p">(</span>
-    <span class="n">capsys</span><span class="p">,</span> <span class="n">docker_container</span><span class="p">,</span> <span class="n">return_code</span><span class="p">,</span> <span class="n">tmp_path</span>
-<span class="p">):</span>
-    <span class="n">tmp_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">tmp_path</span><span class="p">,</span> <span class="s2">&quot;CalledProcessError.sh&quot;</span><span class="p">)</span>
-    <span class="c1"># &quot;This is stdout&quot; to stdout, &quot;This is stderr&quot; to stderr</span>
-    <span class="n">script</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;&quot;&quot;#!/bin/bash</span>
-<span class="s2">echo &quot;This is stdout&quot;</span>
-<span class="s2">&gt;&amp;2 echo &quot;This is stderr&quot;</span>
-<span class="si">{</span><span class="s2">&quot;exit 1&quot;</span> <span class="k">if</span> <span class="n">return_code</span> <span class="k">else</span> <span class="s2">&quot;&quot;</span><span class="si">}</span><span class="s2"></span>
-<span class="s2">&quot;&quot;&quot;</span>
-    <span class="n">write_file</span><span class="p">(</span><span class="n">tmp_file</span><span class="p">,</span> <span class="n">script</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">return_code</span><span class="p">:</span>
-        <span class="k">with</span> <span class="n">pytest</span><span class="o">.</span><span class="n">raises</span><span class="p">(</span><span class="n">CalledProcessError</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">Client</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
-                <span class="n">docker_container</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="sa">f</span><span class="s2">&quot;/bin/sh </span><span class="si">{</span><span class="n">tmp_file</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">stream</span><span class="o">=</span><span class="kc">True</span>
-            <span class="p">):</span>
-                <span class="nb">print</span><span class="p">(</span><span class="n">line</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">Client</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span>
-            <span class="n">docker_container</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="sa">f</span><span class="s2">&quot;/bin/sh </span><span class="si">{</span><span class="n">tmp_file</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="n">stream</span><span class="o">=</span><span class="kc">True</span>
-        <span class="p">):</span>
-            <span class="nb">print</span><span class="p">(</span><span class="n">line</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">)</span>
-    <span class="n">captured</span> <span class="o">=</span> <span class="n">capsys</span><span class="o">.</span><span class="n">readouterr</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="s2">&quot;stdout&quot;</span> <span class="ow">in</span> <span class="n">captured</span><span class="o">.</span><span class="n">out</span>
-    <span class="k">if</span> <span class="n">return_code</span><span class="p">:</span>
-        <span class="k">assert</span> <span class="s2">&quot;stderr&quot;</span> <span class="ow">in</span> <span class="n">captured</span><span class="o">.</span><span class="n">err</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">assert</span> <span class="s2">&quot;stderr&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">captured</span><span class="o">.</span><span class="n">err</span></div>
-
-
-<div class="viewcode-block" id="test_inspect"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_client.test_inspect">[docs]</a><span class="k">def</span> <span class="nf">test_inspect</span><span class="p">(</span><span class="n">docker_container</span><span class="p">):</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">inspect</span><span class="p">(</span><span class="n">docker_container</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-    <span class="k">assert</span> <span class="s2">&quot;attributes&quot;</span> <span class="ow">in</span> <span class="n">result</span> <span class="ow">or</span> <span class="s2">&quot;data&quot;</span> <span class="ow">in</span> <span class="n">result</span></div>
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diff --git a/docs/api/modules/spython/tests/test_instances.html b/docs/api/modules/spython/tests/test_instances.html
deleted file mode 100644
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--- a/docs/api/modules/spython/tests/test_instances.html
+++ /dev/null
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-            
-  <h1>Source code for spython.tests.test_instances</h1><div class="highlight"><pre>
-<span></span><span class="ch">#!/usr/bin/python</span>
-
-<span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-<span class="kn">import</span> <span class="nn">pytest</span>
-<span class="kn">from</span> <span class="nn">spython.main</span> <span class="kn">import</span> <span class="n">Client</span>
-
-
-<div class="viewcode-block" id="test_instance_class"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_instances.test_instance_class">[docs]</a><span class="k">def</span> <span class="nf">test_instance_class</span><span class="p">():</span>
-    <span class="n">instance</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instance</span><span class="p">(</span><span class="s2">&quot;docker://ubuntu&quot;</span><span class="p">,</span> <span class="n">start</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">instance</span><span class="o">.</span><span class="n">get_uri</span><span class="p">()</span> <span class="o">==</span> <span class="s2">&quot;instance://&quot;</span> <span class="o">+</span> <span class="n">instance</span><span class="o">.</span><span class="n">name</span>
-    <span class="k">assert</span> <span class="n">instance</span><span class="o">.</span><span class="n">name</span> <span class="o">!=</span> <span class="s2">&quot;&quot;</span>
-
-    <span class="n">name</span> <span class="o">=</span> <span class="s2">&quot;coolName&quot;</span>
-    <span class="n">instance</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instance</span><span class="p">(</span><span class="s2">&quot;docker://busybox:1.30.1&quot;</span><span class="p">,</span> <span class="n">start</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">name</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">instance</span><span class="o">.</span><span class="n">get_uri</span><span class="p">()</span> <span class="o">==</span> <span class="s2">&quot;instance://&quot;</span> <span class="o">+</span> <span class="n">instance</span><span class="o">.</span><span class="n">name</span>
-    <span class="k">assert</span> <span class="n">instance</span><span class="o">.</span><span class="n">name</span> <span class="o">==</span> <span class="n">name</span></div>
-
-
-<div class="viewcode-block" id="test_has_no_instances"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_instances.test_has_no_instances">[docs]</a><span class="k">def</span> <span class="nf">test_has_no_instances</span><span class="p">():</span>
-    <span class="n">instances</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instances</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">instances</span> <span class="o">==</span> <span class="p">[]</span></div>
-
-
-<div class="viewcode-block" id="TestInstanceFuncs"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_instances.TestInstanceFuncs">[docs]</a><span class="k">class</span> <span class="nc">TestInstanceFuncs</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-<div class="viewcode-block" id="TestInstanceFuncs.cleanup"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_instances.TestInstanceFuncs.cleanup">[docs]</a>    <span class="nd">@pytest</span><span class="o">.</span><span class="n">fixture</span><span class="p">(</span><span class="n">autouse</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-    <span class="k">def</span> <span class="nf">cleanup</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">yield</span>
-        <span class="n">Client</span><span class="o">.</span><span class="n">instance_stopall</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="TestInstanceFuncs.test_instance_cmds"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_instances.TestInstanceFuncs.test_instance_cmds">[docs]</a>    <span class="k">def</span> <span class="nf">test_instance_cmds</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">docker_container</span><span class="p">):</span>
-        <span class="n">image</span> <span class="o">=</span> <span class="n">docker_container</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-        <span class="n">myinstance</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instance</span><span class="p">(</span><span class="n">image</span><span class="p">)</span>
-        <span class="k">assert</span> <span class="n">myinstance</span><span class="o">.</span><span class="n">get_uri</span><span class="p">()</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;instance://&quot;</span><span class="p">)</span>
-
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;...Case 2: List instances&quot;</span><span class="p">)</span>
-        <span class="n">instances</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instances</span><span class="p">()</span>
-        <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">instances</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span>
-        <span class="n">instances</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instances</span><span class="p">(</span><span class="n">return_json</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-        <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">instances</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span>
-        <span class="k">assert</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">instances</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">dict</span><span class="p">)</span>
-
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;...Case 3: Commands to instances&quot;</span><span class="p">)</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span><span class="n">myinstance</span><span class="p">,</span> <span class="p">[</span><span class="s2">&quot;echo&quot;</span><span class="p">,</span> <span class="s2">&quot;hello&quot;</span><span class="p">])</span>
-        <span class="k">assert</span> <span class="n">result</span> <span class="o">==</span> <span class="s2">&quot;hello</span><span class="se">\n</span><span class="s2">&quot;</span>
-
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;...Case 4: Return value from instance&quot;</span><span class="p">)</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">execute</span><span class="p">(</span><span class="n">myinstance</span><span class="p">,</span> <span class="s2">&quot;ls /&quot;</span><span class="p">,</span> <span class="n">return_result</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="n">result</span><span class="p">)</span>
-        <span class="k">assert</span> <span class="s2">&quot;tmp</span><span class="se">\n</span><span class="s2">usr</span><span class="se">\n</span><span class="s2">var&quot;</span> <span class="ow">in</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;message&quot;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">result</span><span class="p">[</span><span class="s2">&quot;return_code&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span>
-
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;...Case 5: Stop instances&quot;</span><span class="p">)</span>
-        <span class="n">myinstance</span><span class="o">.</span><span class="n">stop</span><span class="p">()</span>
-        <span class="n">instances</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instances</span><span class="p">()</span>
-        <span class="k">assert</span> <span class="n">instances</span> <span class="o">==</span> <span class="p">[]</span>
-        <span class="n">myinstance1</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instance</span><span class="p">(</span><span class="n">image</span><span class="p">)</span>
-        <span class="n">myinstance2</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instance</span><span class="p">(</span><span class="n">image</span><span class="p">)</span>
-        <span class="k">assert</span> <span class="n">myinstance1</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span>
-        <span class="k">assert</span> <span class="n">myinstance2</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span>
-        <span class="n">instances</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instances</span><span class="p">()</span>
-        <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">instances</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span>
-        <span class="n">Client</span><span class="o">.</span><span class="n">instance_stopall</span><span class="p">()</span>
-        <span class="n">instances</span> <span class="o">=</span> <span class="n">Client</span><span class="o">.</span><span class="n">instances</span><span class="p">()</span>
-        <span class="k">assert</span> <span class="n">instances</span> <span class="o">==</span> <span class="p">[]</span></div></div>
-</pre></div>
-
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diff --git a/docs/api/modules/spython/tests/test_utils.html b/docs/api/modules/spython/tests/test_utils.html
deleted file mode 100644
index 62a0fcd8..00000000
--- a/docs/api/modules/spython/tests/test_utils.html
+++ /dev/null
@@ -1,375 +0,0 @@
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-  <h1>Source code for spython.tests.test_utils</h1><div class="highlight"><pre>
-<span></span><span class="ch">#!/usr/bin/python</span>
-
-<span class="c1"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
-
-<span class="c1"># This Source Code Form is subject to the terms of the</span>
-<span class="c1"># Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
-<span class="c1"># with this file, You can obtain one at http://mozilla.org/MPL/2.0/.</span>
-
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">pytest</span>
-<span class="kn">from</span> <span class="nn">semver</span> <span class="kn">import</span> <span class="n">VersionInfo</span>
-<span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">ScopedEnvVar</span>
-
-
-<div class="viewcode-block" id="test_write_read_files"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_write_read_files">[docs]</a><span class="k">def</span> <span class="nf">test_write_read_files</span><span class="p">(</span><span class="n">tmp_path</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;test_write_read_files will test the functions write_file and read_file&quot;&quot;&quot;</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Testing utils.write_file...&quot;</span><span class="p">)</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">write_file</span>
-
-    <span class="n">tmpfile</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">tmp_path</span> <span class="o">/</span> <span class="s2">&quot;written_file.txt&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">)</span>
-    <span class="n">write_file</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="s2">&quot;hello!&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">)</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Testing utils.read_file...&quot;</span><span class="p">)</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">read_file</span>
-
-    <span class="n">content</span> <span class="o">=</span> <span class="n">read_file</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">content</span> <span class="o">==</span> <span class="s2">&quot;hello!&quot;</span></div>
-
-
-<div class="viewcode-block" id="test_write_bad_json"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_write_bad_json">[docs]</a><span class="k">def</span> <span class="nf">test_write_bad_json</span><span class="p">(</span><span class="n">tmp_path</span><span class="p">):</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">write_json</span>
-
-    <span class="n">bad_json</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;Wakkawakkawakka&#39;}&quot;</span><span class="p">:</span> <span class="p">[{</span><span class="kc">True</span><span class="p">},</span> <span class="s2">&quot;2&quot;</span><span class="p">,</span> <span class="mi">3</span><span class="p">]}</span>
-    <span class="n">tmpfile</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">tmp_path</span> <span class="o">/</span> <span class="s2">&quot;json_file.txt&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">)</span>
-    <span class="k">with</span> <span class="n">pytest</span><span class="o">.</span><span class="n">raises</span><span class="p">(</span><span class="ne">TypeError</span><span class="p">):</span>
-        <span class="n">write_json</span><span class="p">(</span><span class="n">bad_json</span><span class="p">,</span> <span class="n">tmpfile</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_write_json"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_write_json">[docs]</a><span class="k">def</span> <span class="nf">test_write_json</span><span class="p">(</span><span class="n">tmp_path</span><span class="p">):</span>
-    <span class="kn">import</span> <span class="nn">json</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">write_json</span>
-
-    <span class="n">good_json</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;Wakkawakkawakka&quot;</span><span class="p">:</span> <span class="p">[</span><span class="kc">True</span><span class="p">,</span> <span class="s2">&quot;2&quot;</span><span class="p">,</span> <span class="mi">3</span><span class="p">]}</span>
-    <span class="n">tmpfile</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">tmp_path</span> <span class="o">/</span> <span class="s2">&quot;good_json_file.txt&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">)</span>
-    <span class="n">write_json</span><span class="p">(</span><span class="n">good_json</span><span class="p">,</span> <span class="n">tmpfile</span><span class="p">)</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
-        <span class="n">content</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
-    <span class="k">assert</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="nb">dict</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="s2">&quot;Wakkawakkawakka&quot;</span> <span class="ow">in</span> <span class="n">content</span></div>
-
-
-<div class="viewcode-block" id="test_check_install"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_check_install">[docs]</a><span class="k">def</span> <span class="nf">test_check_install</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;check install is used to check if a particular software is installed.</span>
-<span class="sd">    If no command is provided, singularity is assumed to be the test case&quot;&quot;&quot;</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Testing utils.check_install&quot;</span><span class="p">)</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">check_install</span>
-
-    <span class="n">is_installed</span> <span class="o">=</span> <span class="n">check_install</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">is_installed</span>
-    <span class="n">is_not_installed</span> <span class="o">=</span> <span class="n">check_install</span><span class="p">(</span><span class="s2">&quot;fakesoftwarename&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="ow">not</span> <span class="n">is_not_installed</span></div>
-
-
-<div class="viewcode-block" id="test_check_get_singularity_version"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_check_get_singularity_version">[docs]</a><span class="k">def</span> <span class="nf">test_check_get_singularity_version</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;check that the singularity version is found to be that installed&quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">get_singularity_version</span>
-
-    <span class="n">version</span> <span class="o">=</span> <span class="n">get_singularity_version</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">!=</span> <span class="s2">&quot;&quot;</span>
-    <span class="k">with</span> <span class="n">ScopedEnvVar</span><span class="p">(</span><span class="s2">&quot;SPYTHON_SINGULARITY_VERSION&quot;</span><span class="p">,</span> <span class="s2">&quot;3.0&quot;</span><span class="p">):</span>
-        <span class="n">version</span> <span class="o">=</span> <span class="n">get_singularity_version</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;3.0&quot;</span></div>
-
-
-<div class="viewcode-block" id="test_check_get_singularity_version_info"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_check_get_singularity_version_info">[docs]</a><span class="k">def</span> <span class="nf">test_check_get_singularity_version_info</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Check that the version_info is correct&quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">get_singularity_version_info</span>
-
-    <span class="k">with</span> <span class="n">ScopedEnvVar</span><span class="p">(</span><span class="s2">&quot;SPYTHON_SINGULARITY_VERSION&quot;</span><span class="p">,</span> <span class="s2">&quot;2.3.1&quot;</span><span class="p">):</span>
-        <span class="n">version</span> <span class="o">=</span> <span class="n">get_singularity_version_info</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">==</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">&gt;</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">&lt;</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
-
-    <span class="k">with</span> <span class="n">ScopedEnvVar</span><span class="p">(</span><span class="s2">&quot;SPYTHON_SINGULARITY_VERSION&quot;</span><span class="p">,</span> <span class="s2">&quot;singularity version 3.2.1-1&quot;</span><span class="p">):</span>
-        <span class="n">version</span> <span class="o">=</span> <span class="n">get_singularity_version_info</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">==</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;1&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">&gt;</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">&lt;</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">&gt;</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">&lt;</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-
-    <span class="k">with</span> <span class="n">ScopedEnvVar</span><span class="p">(</span><span class="s2">&quot;SPYTHON_SINGULARITY_VERSION&quot;</span><span class="p">,</span> <span class="s2">&quot;2.6.1-pull/124.1d068a7&quot;</span><span class="p">):</span>
-        <span class="n">version</span> <span class="o">=</span> <span class="n">get_singularity_version_info</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">==</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">6</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="s2">&quot;pull&quot;</span><span class="p">,</span> <span class="s2">&quot;124.1d068a7&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">&gt;</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">6</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">version</span> <span class="o">&lt;</span> <span class="n">VersionInfo</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">7</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_get_installdir"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_get_installdir">[docs]</a><span class="k">def</span> <span class="nf">test_get_installdir</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;get install directory should return the base of where singularity</span>
-<span class="sd">    is installed</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Testing utils.get_installdir&quot;</span><span class="p">)</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">get_installdir</span>
-
-    <span class="n">whereami</span> <span class="o">=</span> <span class="n">get_installdir</span><span class="p">()</span>
-    <span class="nb">print</span><span class="p">(</span><span class="n">whereami</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">whereami</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;spython&quot;</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_split_uri"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_split_uri">[docs]</a><span class="k">def</span> <span class="nf">test_split_uri</span><span class="p">():</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">split_uri</span>
-
-    <span class="n">protocol</span><span class="p">,</span> <span class="n">image</span> <span class="o">=</span> <span class="n">split_uri</span><span class="p">(</span><span class="s2">&quot;docker://ubuntu&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">protocol</span> <span class="o">==</span> <span class="s2">&quot;docker&quot;</span>
-    <span class="k">assert</span> <span class="n">image</span> <span class="o">==</span> <span class="s2">&quot;ubuntu&quot;</span>
-
-    <span class="n">protocol</span><span class="p">,</span> <span class="n">image</span> <span class="o">=</span> <span class="n">split_uri</span><span class="p">(</span><span class="s2">&quot;http://image/path/with/slash/&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">protocol</span> <span class="o">==</span> <span class="s2">&quot;http&quot;</span>
-    <span class="k">assert</span> <span class="n">image</span> <span class="o">==</span> <span class="s2">&quot;image/path/with/slash&quot;</span>
-
-    <span class="n">protocol</span><span class="p">,</span> <span class="n">image</span> <span class="o">=</span> <span class="n">split_uri</span><span class="p">(</span><span class="s2">&quot;no/proto/&quot;</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">protocol</span> <span class="o">==</span> <span class="s2">&quot;&quot;</span>
-    <span class="k">assert</span> <span class="n">image</span> <span class="o">==</span> <span class="s2">&quot;no/proto&quot;</span></div>
-
-
-<div class="viewcode-block" id="test_remove_uri"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_remove_uri">[docs]</a><span class="k">def</span> <span class="nf">test_remove_uri</span><span class="p">():</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Testing utils.remove_uri&quot;</span><span class="p">)</span>
-    <span class="kn">from</span> <span class="nn">spython.utils</span> <span class="kn">import</span> <span class="n">remove_uri</span>
-
-    <span class="k">assert</span> <span class="n">remove_uri</span><span class="p">(</span><span class="s2">&quot;docker://ubuntu&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;ubuntu&quot;</span>
-    <span class="k">assert</span> <span class="p">(</span>
-        <span class="n">remove_uri</span><span class="p">(</span><span class="s2">&quot;shub://vanessa/singularity-images&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;vanessa/singularity-images&quot;</span>
-    <span class="p">)</span>
-    <span class="k">assert</span> <span class="n">remove_uri</span><span class="p">(</span><span class="s2">&quot;library://library/default/alpine&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;library/default/alpine&quot;</span>
-    <span class="k">assert</span> <span class="n">remove_uri</span><span class="p">(</span><span class="s2">&quot;vanessa/singularity-images&quot;</span><span class="p">)</span> <span class="o">==</span> <span class="s2">&quot;vanessa/singularity-images&quot;</span></div>
-
-
-<div class="viewcode-block" id="test_decode"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_decode">[docs]</a><span class="k">def</span> <span class="nf">test_decode</span><span class="p">():</span>
-    <span class="kn">from</span> <span class="nn">spython.logger</span> <span class="kn">import</span> <span class="n">decodeUtf8String</span>
-
-    <span class="n">out</span> <span class="o">=</span> <span class="n">decodeUtf8String</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="s2">&quot;Hello&quot;</span><span class="p">))</span>
-    <span class="k">assert</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">out</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">out</span> <span class="o">==</span> <span class="s2">&quot;Hello&quot;</span>
-    <span class="n">out</span> <span class="o">=</span> <span class="n">decodeUtf8String</span><span class="p">(</span><span class="nb">bytes</span><span class="p">(</span><span class="sa">b</span><span class="s2">&quot;Hello&quot;</span><span class="p">))</span>
-    <span class="k">assert</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">out</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">out</span> <span class="o">==</span> <span class="s2">&quot;Hello&quot;</span></div>
-
-
-<div class="viewcode-block" id="test_ScopedEnvVar"><a class="viewcode-back" href="../../../source/spython.tests.html#spython.tests.test_utils.test_ScopedEnvVar">[docs]</a><span class="k">def</span> <span class="nf">test_ScopedEnvVar</span><span class="p">():</span>
-    <span class="k">assert</span> <span class="s2">&quot;FOO&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span>
-    <span class="k">with</span> <span class="n">ScopedEnvVar</span><span class="p">(</span><span class="s2">&quot;FOO&quot;</span><span class="p">,</span> <span class="s2">&quot;bar&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
-        <span class="k">assert</span> <span class="n">e</span><span class="o">.</span><span class="n">name</span> <span class="o">==</span> <span class="s2">&quot;FOO&quot;</span>
-        <span class="k">assert</span> <span class="n">e</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="s2">&quot;bar&quot;</span>
-        <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s2">&quot;FOO&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;bar&quot;</span>
-        <span class="k">with</span> <span class="n">ScopedEnvVar</span><span class="p">(</span><span class="s2">&quot;FOO&quot;</span><span class="p">,</span> <span class="s2">&quot;baz&quot;</span><span class="p">):</span>
-            <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s2">&quot;FOO&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;baz&quot;</span>
-        <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s2">&quot;FOO&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;bar&quot;</span>
-        <span class="c1"># None removes it</span>
-        <span class="k">with</span> <span class="n">ScopedEnvVar</span><span class="p">(</span><span class="s2">&quot;FOO&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">):</span>
-            <span class="k">assert</span> <span class="s2">&quot;FOO&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span>
-        <span class="c1"># But empty string is allowed</span>
-        <span class="k">with</span> <span class="n">ScopedEnvVar</span><span class="p">(</span><span class="s2">&quot;FOO&quot;</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">):</span>
-            <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s2">&quot;FOO&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;&quot;</span>
-        <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s2">&quot;FOO&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;bar&quot;</span>
-    <span class="k">assert</span> <span class="s2">&quot;FOO&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span>
-    <span class="c1"># Unset a non-existing variable</span>
-    <span class="k">with</span> <span class="n">ScopedEnvVar</span><span class="p">(</span><span class="s2">&quot;FOO&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">):</span>
-        <span class="k">assert</span> <span class="s2">&quot;FOO&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span>
-    <span class="k">assert</span> <span class="s2">&quot;FOO&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span></div>
-</pre></div>
-
-           </div>
-           
-          </div>
-          <footer>
-  
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
-  </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
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-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
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diff --git a/docs/api/modules/spython/utils/fileio.html b/docs/api/modules/spython/utils/fileio.html
index da12634d..bddb10d8 100644
--- a/docs/api/modules/spython/utils/fileio.html
+++ b/docs/api/modules/spython/utils/fileio.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
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-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.utils.fileio &mdash; Singularity Python API 1 documentation</title>
-  
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-  
-  <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
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-  
+      <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../../../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../../../" src="../../../assets/documentation_options.js"></script>
+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
         <script src="../../../assets/underscore.js"></script>
         <script src="../../../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../../../assets/js/theme.js"></script>
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+    <script src="../../../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
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+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
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-          
-            <a href="../../../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
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+            <a href="../../../index.html" class="icon icon-home"> Singularity Python API
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-
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -71,87 +36,39 @@
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
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-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../../../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="../../index.html">Module code</a> &raquo;</li>
-        
       <li>spython.utils.fileio</li>
-    
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       <li class="wy-breadcrumbs-aside">
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       </li>
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   </ul>
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.utils.fileio</h1><div class="highlight"><pre>
 <span></span><span class="sd">&quot;&quot;&quot;</span>
 
-<span class="sd"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span class="sd"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="sd">This Source Code Form is subject to the terms of the</span>
 <span class="sd">Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -200,7 +117,8 @@ <h1>Source code for spython.utils.fileio</h1><div class="highlight"><pre>
 
 
 <div class="viewcode-block" id="write_json"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.fileio.write_json">[docs]</a><span class="k">def</span> <span class="nf">write_json</span><span class="p">(</span><span class="n">json_obj</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s2">&quot;w&quot;</span><span class="p">,</span> <span class="n">print_pretty</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;write_json will (optionally,pretty print) a json object to file</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    write_json will (optionally,pretty print) a json object to file</span>
 <span class="sd">    :param json_obj: the dict to print to json</span>
 <span class="sd">    :param filename: the output file to write to</span>
 <span class="sd">    :param pretty_print: if True, will use nicer formatting</span>
@@ -214,7 +132,8 @@ <h1>Source code for spython.utils.fileio</h1><div class="highlight"><pre>
 
 
 <div class="viewcode-block" id="read_file"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.fileio.read_file">[docs]</a><span class="k">def</span> <span class="nf">read_file</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s2">&quot;r&quot;</span><span class="p">,</span> <span class="n">readlines</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;write_file will open a file, &quot;filename&quot; and write content, &quot;content&quot;</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    write_file will open a file, &quot;filename&quot; and write content, &quot;content&quot;</span>
 <span class="sd">    and properly close the file</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">mode</span><span class="p">)</span> <span class="k">as</span> <span class="n">filey</span><span class="p">:</span>
@@ -226,7 +145,8 @@ <h1>Source code for spython.utils.fileio</h1><div class="highlight"><pre>
 
 
 <div class="viewcode-block" id="read_json"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.fileio.read_json">[docs]</a><span class="k">def</span> <span class="nf">read_json</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s2">&quot;r&quot;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;read_json reads in a json file and returns</span>
+    <span class="sd">&quot;&quot;&quot;</span>
+<span class="sd">    read_json reads in a json file and returns</span>
 <span class="sd">    the data structure as dict.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">mode</span><span class="p">)</span> <span class="k">as</span> <span class="n">filey</span><span class="p">:</span>
@@ -235,49 +155,30 @@ <h1>Source code for spython.utils.fileio</h1><div class="highlight"><pre>
 </pre></div>
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-    
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-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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diff --git a/docs/api/modules/spython/utils/terminal.html b/docs/api/modules/spython/utils/terminal.html
index 2003624d..91fbfdfe 100644
--- a/docs/api/modules/spython/utils/terminal.html
+++ b/docs/api/modules/spython/utils/terminal.html
@@ -1,69 +1,34 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.utils.terminal &mdash; Singularity Python API 1 documentation</title>
-  
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-  
-  <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
-
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+      <link rel="stylesheet" href="../../../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../../assets/css/theme.css" type="text/css" />
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+        <script data-url_root="../../../" id="documentation_options" src="../../../assets/documentation_options.js"></script>
         <script src="../../../assets/jquery.js"></script>
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     <link rel="index" title="Index" href="../../../genindex.html" />
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@@ -71,87 +36,39 @@
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-        
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       <li class="wy-breadcrumbs-aside">
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-
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   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
 <span></span><span class="sd">&quot;&quot;&quot;</span>
 
-<span class="sd"># Copyright (C) 2017-2021 Vanessa Sochat.</span>
+<span class="sd"># Copyright (C) 2017-2022 Vanessa Sochat.</span>
 
 <span class="sd">This Source Code Form is subject to the terms of the</span>
 <span class="sd">Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed</span>
@@ -184,7 +101,7 @@ <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">cmd</span>
 
 
-<div class="viewcode-block" id="check_install"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.check_install">[docs]</a><span class="k">def</span> <span class="nf">check_install</span><span class="p">(</span><span class="n">software</span><span class="o">=</span><span class="s2">&quot;singularity&quot;</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+<div class="viewcode-block" id="check_install"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.check_install">[docs]</a><span class="k">def</span> <span class="nf">check_install</span><span class="p">(</span><span class="n">software</span><span class="o">=</span><span class="s2">&quot;singularity&quot;</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;check_install will attempt to run the singularity command, and</span>
 <span class="sd">    return True if installed. The command line utils will not run</span>
 <span class="sd">    without this check.</span>
@@ -209,14 +126,14 @@ <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">found</span></div>
 
 
-<div class="viewcode-block" id="which"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.which">[docs]</a><span class="k">def</span> <span class="nf">which</span><span class="p">(</span><span class="n">software</span><span class="o">=</span><span class="s2">&quot;singularity&quot;</span><span class="p">):</span>
+<div class="viewcode-block" id="which"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.which">[docs]</a><span class="k">def</span> <span class="nf">which</span><span class="p">(</span><span class="n">software</span><span class="o">=</span><span class="s2">&quot;singularity&quot;</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;which returns the full path to where software is installed.&quot;&quot;&quot;</span>
     <span class="n">cmd</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;which&quot;</span><span class="p">,</span> <span class="n">software</span><span class="p">]</span>
     <span class="n">result</span> <span class="o">=</span> <span class="n">run_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">quiet</span><span class="o">=</span><span class="kc">True</span><span class="p">)[</span><span class="s2">&quot;message&quot;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
     <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">strip</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="get_singularity_version"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.get_singularity_version">[docs]</a><span class="k">def</span> <span class="nf">get_singularity_version</span><span class="p">():</span>
+<div class="viewcode-block" id="get_singularity_version"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.get_singularity_version">[docs]</a><span class="k">def</span> <span class="nf">get_singularity_version</span><span class="p">():</span>
     <span class="sd">&quot;&quot;&quot;get the full singularity client version as reported by</span>
 <span class="sd">    singularity --version [...]. For Singularity 3.x, this means:</span>
 <span class="sd">    &quot;singularity version 3.0.1-1&quot;</span>
@@ -235,17 +152,17 @@ <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">version</span></div>
 
 
-<div class="viewcode-block" id="get_userhome"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.get_userhome">[docs]</a><span class="k">def</span> <span class="nf">get_userhome</span><span class="p">():</span>
+<div class="viewcode-block" id="get_userhome"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.get_userhome">[docs]</a><span class="k">def</span> <span class="nf">get_userhome</span><span class="p">():</span>
     <span class="sd">&quot;&quot;&quot;get the user home based on the effective uid&quot;&quot;&quot;</span>
     <span class="k">return</span> <span class="n">pwd</span><span class="o">.</span><span class="n">getpwuid</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">getuid</span><span class="p">())[</span><span class="mi">5</span><span class="p">]</span></div>
 
 
-<div class="viewcode-block" id="get_username"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.get_username">[docs]</a><span class="k">def</span> <span class="nf">get_username</span><span class="p">():</span>
+<div class="viewcode-block" id="get_username"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.get_username">[docs]</a><span class="k">def</span> <span class="nf">get_username</span><span class="p">():</span>
     <span class="sd">&quot;&quot;&quot;get the user name based on the effective uid&quot;&quot;&quot;</span>
     <span class="k">return</span> <span class="n">pwd</span><span class="o">.</span><span class="n">getpwuid</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">getuid</span><span class="p">())[</span><span class="mi">0</span><span class="p">]</span></div>
 
 
-<div class="viewcode-block" id="get_singularity_version_info"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.get_singularity_version_info">[docs]</a><span class="k">def</span> <span class="nf">get_singularity_version_info</span><span class="p">():</span>
+<div class="viewcode-block" id="get_singularity_version_info"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.get_singularity_version_info">[docs]</a><span class="k">def</span> <span class="nf">get_singularity_version_info</span><span class="p">():</span>
     <span class="sd">&quot;&quot;&quot;get the full singularity client version as a semantic version&quot; &quot;&quot;&quot;</span>
     <span class="n">version_string</span> <span class="o">=</span> <span class="n">get_singularity_version</span><span class="p">()</span>
     <span class="n">prefix</span> <span class="o">=</span> <span class="s2">&quot;singularity version &quot;</span>
@@ -253,15 +170,21 @@ <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
         <span class="n">version_string</span> <span class="o">=</span> <span class="n">version_string</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">)</span> <span class="p">:]</span>
     <span class="k">elif</span> <span class="s2">&quot;/&quot;</span> <span class="ow">in</span> <span class="n">version_string</span><span class="p">:</span>  <span class="c1"># Handle old stuff like &quot;x.y.z-pull/123-0a5d&quot;</span>
         <span class="n">version_string</span> <span class="o">=</span> <span class="n">version_string</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">&quot;/&quot;</span><span class="p">,</span> <span class="s2">&quot;+&quot;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">semver</span><span class="o">.</span><span class="n">parse_version_info</span><span class="p">(</span><span class="n">version_string</span><span class="p">)</span></div>
+    <span class="k">return</span> <span class="n">semver</span><span class="o">.</span><span class="n">VersionInfo</span><span class="o">.</span><span class="n">parse</span><span class="p">(</span><span class="n">version_string</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="get_installdir"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.get_installdir">[docs]</a><span class="k">def</span> <span class="nf">get_installdir</span><span class="p">():</span>
+<div class="viewcode-block" id="get_installdir"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.get_installdir">[docs]</a><span class="k">def</span> <span class="nf">get_installdir</span><span class="p">():</span>
     <span class="sd">&quot;&quot;&quot;get_installdir returns the installation directory of the application&quot;&quot;&quot;</span>
     <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)))</span></div>
 
 
-<div class="viewcode-block" id="stream_command"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.stream_command">[docs]</a><span class="k">def</span> <span class="nf">stream_command</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">no_newline_regexp</span><span class="o">=</span><span class="s2">&quot;Progess&quot;</span><span class="p">,</span> <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">sudo_options</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<div class="viewcode-block" id="stream_command"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.stream_command">[docs]</a><span class="k">def</span> <span class="nf">stream_command</span><span class="p">(</span>
+    <span class="n">cmd</span><span class="p">,</span>
+    <span class="n">no_newline_regexp</span><span class="o">=</span><span class="s2">&quot;Progess&quot;</span><span class="p">,</span>
+    <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+    <span class="n">sudo_options</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">output_type</span><span class="o">=</span><span class="s2">&quot;stdout&quot;</span><span class="p">,</span>
+<span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;stream a command (yield) back to the user, as each line is available.</span>
 
 <span class="sd">    # Example usage:</span>
@@ -278,14 +201,25 @@ <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
 <span class="sd">    sudo_options: string or list of strings that will be passed as options to sudo</span>
 
 <span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="n">output_type</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;stdout&quot;</span><span class="p">,</span> <span class="s2">&quot;stderr&quot;</span><span class="p">]:</span>
+        <span class="n">bot</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s2">&quot;Invalid output type </span><span class="si">%s</span><span class="s2">. Must be stderr or stdout.&quot;</span> <span class="o">%</span> <span class="n">output_type</span><span class="p">)</span>
     <span class="n">cmd</span> <span class="o">=</span> <span class="n">_process_sudo_cmd</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">sudo</span><span class="p">,</span> <span class="n">sudo_options</span><span class="p">)</span>
 
     <span class="n">process</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">Popen</span><span class="p">(</span>
         <span class="n">cmd</span><span class="p">,</span> <span class="n">stdout</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span> <span class="n">stderr</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span> <span class="n">universal_newlines</span><span class="o">=</span><span class="kc">True</span>
     <span class="p">)</span>
-    <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">iter</span><span class="p">(</span><span class="n">process</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">readline</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">):</span>
+
+    <span class="c1"># Allow the runner to choose streaming output or error</span>
+    <span class="n">stream</span> <span class="o">=</span> <span class="n">process</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">readline</span>
+    <span class="k">if</span> <span class="n">output_type</span> <span class="o">==</span> <span class="s2">&quot;stderr&quot;</span><span class="p">:</span>
+        <span class="n">stream</span> <span class="o">=</span> <span class="n">process</span><span class="o">.</span><span class="n">stderr</span><span class="o">.</span><span class="n">readline</span>
+
+    <span class="c1"># Stream lines back to the caller</span>
+    <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">iter</span><span class="p">(</span><span class="n">stream</span><span class="p">,</span> <span class="s2">&quot;&quot;</span><span class="p">):</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">no_newline_regexp</span><span class="p">,</span> <span class="n">line</span><span class="p">):</span>
             <span class="k">yield</span> <span class="n">line</span>
+
+    <span class="c1"># If there is an error, raise.</span>
     <span class="n">process</span><span class="o">.</span><span class="n">stdout</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
     <span class="n">return_code</span> <span class="o">=</span> <span class="n">process</span><span class="o">.</span><span class="n">wait</span><span class="p">()</span>
     <span class="k">if</span> <span class="n">return_code</span><span class="p">:</span>
@@ -293,7 +227,7 @@ <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
         <span class="k">raise</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span><span class="p">(</span><span class="n">return_code</span><span class="p">,</span> <span class="n">cmd</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="run_command"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.run_command">[docs]</a><span class="k">def</span> <span class="nf">run_command</span><span class="p">(</span>
+<div class="viewcode-block" id="run_command"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.run_command">[docs]</a><span class="k">def</span> <span class="nf">run_command</span><span class="p">(</span>
     <span class="n">cmd</span><span class="p">,</span>
     <span class="n">sudo</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
     <span class="n">capture</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
@@ -355,7 +289,7 @@ <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
 <span class="c1">################################################################################</span>
 
 
-<div class="viewcode-block" id="format_container_name"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.format_container_name">[docs]</a><span class="k">def</span> <span class="nf">format_container_name</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">special_characters</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<div class="viewcode-block" id="format_container_name"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.format_container_name">[docs]</a><span class="k">def</span> <span class="nf">format_container_name</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">special_characters</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;format_container_name will take a name supplied by the user,</span>
 <span class="sd">    remove all special characters (except for those defined by &quot;special-characters&quot;</span>
 <span class="sd">    and return the new image name.</span>
@@ -365,7 +299,7 @@ <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="s2">&quot;&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">name</span> <span class="k">if</span> <span class="n">e</span><span class="o">.</span><span class="n">isalnum</span><span class="p">()</span> <span class="ow">or</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">special_characters</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="split_uri"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.split_uri">[docs]</a><span class="k">def</span> <span class="nf">split_uri</span><span class="p">(</span><span class="n">container</span><span class="p">):</span>
+<div class="viewcode-block" id="split_uri"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.split_uri">[docs]</a><span class="k">def</span> <span class="nf">split_uri</span><span class="p">(</span><span class="n">container</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Split the uri of a container into the protocol and image part</span>
 
 <span class="sd">    An empty protocol is returned if none found.</span>
@@ -380,55 +314,36 @@ <h1>Source code for spython.utils.terminal</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">protocol</span><span class="p">,</span> <span class="n">image</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s2">&quot;/&quot;</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="remove_uri"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.instance.remove_uri">[docs]</a><span class="k">def</span> <span class="nf">remove_uri</span><span class="p">(</span><span class="n">container</span><span class="p">):</span>
+<div class="viewcode-block" id="remove_uri"><a class="viewcode-back" href="../../../source/spython.utils.html#spython.utils.terminal.remove_uri">[docs]</a><span class="k">def</span> <span class="nf">remove_uri</span><span class="p">(</span><span class="n">container</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;remove_uri will remove docker:// or shub:// or library:// from the uri&quot;&quot;&quot;</span>
     <span class="k">return</span> <span class="n">split_uri</span><span class="p">(</span><span class="n">container</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span></div>
 </pre></div>
 
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-  
 
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   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
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-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
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-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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+  <script>
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\ No newline at end of file
diff --git a/docs/api/objects.inv b/docs/api/objects.inv
index 6272ba7a..29fd2b57 100644
Binary files a/docs/api/objects.inv and b/docs/api/objects.inv differ
diff --git a/docs/api/py-modindex.html b/docs/api/py-modindex.html
index 9746e41b..94253b8f 100644
--- a/docs/api/py-modindex.html
+++ b/docs/api/py-modindex.html
@@ -1,38 +1,20 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>Python Module Index &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
-  
+      <link rel="stylesheet" href="assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="./" src="assets/documentation_options.js"></script>
+        <script data-url_root="./" id="documentation_options" src="assets/documentation_options.js"></script>
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         <script src="assets/underscore.js"></script>
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   <div class="section" id="spython">
-<h1>spython<a class="headerlink" href="#spython" title="Permalink to this headline">¶</a></h1>
+<h1>spython<a class="headerlink" href="#spython" title="Permalink to this headline"></a></h1>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="spython.html">spython package</a><ul>
@@ -216,49 +131,30 @@ <h1>spython<a class="headerlink" href="#spython" title="Permalink to this headli
 
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
-
     </section>
-
   </div>
-  
-
-  <script type="text/javascript">
+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
-  </script>
-
-  
-  
-    
-   
+  </script> 
 
 </body>
 </html>
\ No newline at end of file
diff --git a/docs/api/source/spython.client.html b/docs/api/source/spython.client.html
index 80b25be0..225659b8 100644
--- a/docs/api/source/spython.client.html
+++ b/docs/api/source/spython.client.html
@@ -1,71 +1,36 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.client package &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
-  
+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../" src="../assets/documentation_options.js"></script>
+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
         <script src="../assets/jquery.js"></script>
         <script src="../assets/underscore.js"></script>
         <script src="../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../assets/js/theme.js"></script>
-
-    
+    <script src="../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="spython.image package" href="spython.image.html" />
     <link rel="prev" title="spython package" href="spython.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
-          
-            
-            
               <div class="version">
                 0.0
               </div>
-            
-          
-
-          
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -73,18 +38,7 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
-          
-        </div>
-
-        
-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-          
-            
-            
-              
-            
-            
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="spython.html">spython package</a><ul class="current">
 <li class="toctree-l2 current"><a class="reference internal" href="spython.html#subpackages">Subpackages</a><ul class="current">
@@ -110,81 +64,41 @@
 </li>
 </ul>
 
-            
-          
         </div>
-        
       </div>
     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
-
-      
-      <nav class="wy-nav-top" aria-label="top navigation">
-        
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
           <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
           <a href="../index.html">Singularity Python API</a>
-        
       </nav>
 
-
       <div class="wy-nav-content">
-        
         <div class="rst-content">
-        
-          
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-
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-
-
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-
-
-
-<div role="navigation" aria-label="breadcrumbs navigation">
-
+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../index.html" class="icon icon-home"></a> &raquo;</li>
-        
           <li><a href="spython.html">spython package</a> &raquo;</li>
-        
       <li>spython.client package</li>
-    
-    
       <li class="wy-breadcrumbs-aside">
-        
-            
             <a href="../_sources/source/spython.client.rst.txt" rel="nofollow"> View page source</a>
-          
-        
       </li>
-    
   </ul>
-
-  
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <div class="section" id="spython-client-package">
-<h1>spython.client package<a class="headerlink" href="#spython-client-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.client package<a class="headerlink" href="#spython-client-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.client.recipe">
-<span id="spython-client-recipe-module"></span><h2>spython.client.recipe module<a class="headerlink" href="#module-spython.client.recipe" title="Permalink to this headline">¶</a></h2>
+<span id="spython-client-recipe-module"></span><h2>spython.client.recipe module<a class="headerlink" href="#module-spython.client.recipe" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.client.recipe.main">
-<code class="sig-prename descclassname">spython.client.recipe.</code><code class="sig-name descname">main</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">args</span></em>, <em class="sig-param"><span class="n">options</span></em>, <em class="sig-param"><span class="n">parser</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/recipe.html#main"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.recipe.main" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.recipe.main">
+<code class="sig-prename descclassname"><span class="pre">spython.client.recipe.</span></code><code class="sig-name descname"><span class="pre">main</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">args</span></span></em>, <em><span class="n"><span class="pre">options</span></span></em>, <em><span class="n"><span class="pre">parser</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/recipe.html#main"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.recipe.main" title="Permalink to this definition"></a></dt>
 <dd><p>This function serves as a wrapper around the DockerParser,
 SingularityParser, DockerWriter, and SingularityParser converters.
 We can either save to file if args.outfile is defined, or print
@@ -193,66 +107,66 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 </div>
 <div class="section" id="module-spython.client.shell">
-<span id="spython-client-shell-module"></span><h2>spython.client.shell module<a class="headerlink" href="#module-spython.client.shell" title="Permalink to this headline">¶</a></h2>
+<span id="spython-client-shell-module"></span><h2>spython.client.shell module<a class="headerlink" href="#module-spython.client.shell" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.client.shell.ipython">
-<code class="sig-prename descclassname">spython.client.shell.</code><code class="sig-name descname">ipython</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#ipython"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.shell.ipython" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.shell.ipython">
+<code class="sig-prename descclassname"><span class="pre">spython.client.shell.</span></code><code class="sig-name descname"><span class="pre">ipython</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#ipython"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.shell.ipython" title="Permalink to this definition"></a></dt>
 <dd><p>give the user an ipython shell</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.client.shell.main">
-<code class="sig-prename descclassname">spython.client.shell.</code><code class="sig-name descname">main</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">args</span></em>, <em class="sig-param"><span class="n">options</span></em>, <em class="sig-param"><span class="n">parser</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#main"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.shell.main" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.shell.main">
+<code class="sig-prename descclassname"><span class="pre">spython.client.shell.</span></code><code class="sig-name descname"><span class="pre">main</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">args</span></span></em>, <em><span class="n"><span class="pre">options</span></span></em>, <em><span class="n"><span class="pre">parser</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#main"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.shell.main" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py function">
-<dt id="spython.client.shell.prepare_client">
-<code class="sig-prename descclassname">spython.client.shell.</code><code class="sig-name descname">prepare_client</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#prepare_client"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.shell.prepare_client" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.shell.prepare_client">
+<code class="sig-prename descclassname"><span class="pre">spython.client.shell.</span></code><code class="sig-name descname"><span class="pre">prepare_client</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#prepare_client"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.shell.prepare_client" title="Permalink to this definition"></a></dt>
 <dd><p>prepare a client to embed in a shell with recipe parsers and writers.</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.client.shell.python">
-<code class="sig-prename descclassname">spython.client.shell.</code><code class="sig-name descname">python</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#python"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.shell.python" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.shell.python">
+<code class="sig-prename descclassname"><span class="pre">spython.client.shell.</span></code><code class="sig-name descname"><span class="pre">python</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#python"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.shell.python" title="Permalink to this definition"></a></dt>
 <dd><p>give the user a python shell</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.client.shell.run_bpython">
-<code class="sig-prename descclassname">spython.client.shell.</code><code class="sig-name descname">run_bpython</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#run_bpython"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.shell.run_bpython" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.shell.run_bpython">
+<code class="sig-prename descclassname"><span class="pre">spython.client.shell.</span></code><code class="sig-name descname"><span class="pre">run_bpython</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/shell.html#run_bpython"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.shell.run_bpython" title="Permalink to this definition"></a></dt>
 <dd><p>give the user a bpython shell</p>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.client.test">
-<span id="spython-client-test-module"></span><h2>spython.client.test module<a class="headerlink" href="#module-spython.client.test" title="Permalink to this headline">¶</a></h2>
+<span id="spython-client-test-module"></span><h2>spython.client.test module<a class="headerlink" href="#module-spython.client.test" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.client.test.main">
-<code class="sig-prename descclassname">spython.client.test.</code><code class="sig-name descname">main</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">args</span></em>, <em class="sig-param"><span class="n">options</span></em>, <em class="sig-param"><span class="n">parser</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/test.html#main"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.test.main" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.test.main">
+<code class="sig-prename descclassname"><span class="pre">spython.client.test.</span></code><code class="sig-name descname"><span class="pre">main</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">args</span></span></em>, <em><span class="n"><span class="pre">options</span></span></em>, <em><span class="n"><span class="pre">parser</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client/test.html#main"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.test.main" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 </div>
 <div class="section" id="module-spython.client">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.client" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.client" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.client.get_parser">
-<code class="sig-prename descclassname">spython.client.</code><code class="sig-name descname">get_parser</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client.html#get_parser"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.get_parser" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.get_parser">
+<code class="sig-prename descclassname"><span class="pre">spython.client.</span></code><code class="sig-name descname"><span class="pre">get_parser</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client.html#get_parser"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.get_parser" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py function">
-<dt id="spython.client.main">
-<code class="sig-prename descclassname">spython.client.</code><code class="sig-name descname">main</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client.html#main"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.main" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.main">
+<code class="sig-prename descclassname"><span class="pre">spython.client.</span></code><code class="sig-name descname"><span class="pre">main</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client.html#main"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.main" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py function">
-<dt id="spython.client.set_verbosity">
-<code class="sig-prename descclassname">spython.client.</code><code class="sig-name descname">set_verbosity</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">args</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client.html#set_verbosity"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.set_verbosity" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.set_verbosity">
+<code class="sig-prename descclassname"><span class="pre">spython.client.</span></code><code class="sig-name descname"><span class="pre">set_verbosity</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">args</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client.html#set_verbosity"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.set_verbosity" title="Permalink to this definition"></a></dt>
 <dd><p>determine the message level in the environment to set based on args.</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.client.version">
-<code class="sig-prename descclassname">spython.client.</code><code class="sig-name descname">version</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client.html#version"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.client.version" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.client.version">
+<code class="sig-prename descclassname"><span class="pre">spython.client.</span></code><code class="sig-name descname"><span class="pre">version</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/client.html#version"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.client.version" title="Permalink to this definition"></a></dt>
 <dd><p>version prints the version, both for the user and help output</p>
 </dd></dl>
 
@@ -261,58 +175,33 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 
            </div>
-           
           </div>
-          <footer>
-  
-    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
-      
-        <a href="spython.image.html" class="btn btn-neutral float-right" title="spython.image package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
-      
-      
-        <a href="spython.html" class="btn btn-neutral float-left" title="spython package" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
-      
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="spython.html" class="btn btn-neutral float-left" title="spython package" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="spython.image.html" class="btn btn-neutral float-right" title="spython.image package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
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-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
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-</footer>
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
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\ No newline at end of file
diff --git a/docs/api/source/spython.html b/docs/api/source/spython.html
index d6221f29..d1d5c7a8 100644
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+++ b/docs/api/source/spython.html
@@ -1,71 +1,36 @@
-
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython package &mdash; Singularity Python API 1 documentation</title>
-  
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-  
-  <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
-
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+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
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+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
         <script src="../assets/jquery.js"></script>
         <script src="../assets/underscore.js"></script>
         <script src="../assets/doctools.js"></script>
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-    <script type="text/javascript" src="../assets/js/theme.js"></script>
-
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+    <script src="../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="spython.client package" href="spython.client.html" />
     <link rel="prev" title="Welcome to Singularity Python API’s documentation!" href="../index.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
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+<body class="wy-body-for-nav"> 
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-    
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-          
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-          
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+            <a href="../index.html" class="icon icon-home"> Singularity Python API
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-
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                 0.0
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -73,18 +38,7 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
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-        </div>
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-          
-            
-            
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul class="current">
 <li class="toctree-l1 current"><a class="current reference internal" href="#">spython package</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="#subpackages">Subpackages</a><ul>
@@ -103,73 +57,34 @@
 </li>
 </ul>
 
-            
-          
         </div>
-        
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     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
-
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-      <nav class="wy-nav-top" aria-label="top navigation">
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-        
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
       <li><a href="../index.html" class="icon icon-home"></a> &raquo;</li>
-        
       <li>spython package</li>
-    
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-        
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             <a href="../_sources/source/spython.rst.txt" rel="nofollow"> View page source</a>
-          
-        
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-    
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-
-  
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <div class="section" id="spython-package">
-<h1>spython package<a class="headerlink" href="#spython-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython package<a class="headerlink" href="#spython-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="subpackages">
-<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline">¶</a></h2>
+<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline"></a></h2>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="spython.client.html">spython.client package</a><ul>
@@ -184,11 +99,11 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to thi
 <li class="toctree-l2"><a class="reference internal" href="spython.image.html#subpackages">Subpackages</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="spython.image.cmd.html">spython.image.cmd package</a><ul>
 <li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#submodules">Submodules</a></li>
-<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd.create">spython.image.cmd.create module</a></li>
-<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd.export">spython.image.cmd.export module</a></li>
-<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd.importcmd">spython.image.cmd.importcmd module</a></li>
-<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd.utils">spython.image.cmd.utils module</a></li>
-<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd">Module contents</a></li>
+<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#spython-image-cmd-create-module">spython.image.cmd.create module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#spython-image-cmd-export-module">spython.image.cmd.export module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#spython-image-cmd-importcmd-module">spython.image.cmd.importcmd module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#spython-image-cmd-utils-module">spython.image.cmd.utils module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="spython.image.cmd.html#module-contents">Module contents</a></li>
 </ul>
 </li>
 </ul>
@@ -200,7 +115,7 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to thi
 <li class="toctree-l2"><a class="reference internal" href="spython.instance.html#subpackages">Subpackages</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="spython.instance.cmd.html">spython.instance.cmd package</a><ul>
 <li class="toctree-l4"><a class="reference internal" href="spython.instance.cmd.html#submodules">Submodules</a></li>
-<li class="toctree-l4"><a class="reference internal" href="spython.instance.cmd.html#module-spython.instance.cmd.iutils">spython.instance.cmd.iutils module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="spython.instance.cmd.html#spython-instance-cmd-iutils-module">spython.instance.cmd.iutils module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="spython.instance.cmd.html#module-spython.instance.cmd.start">spython.instance.cmd.start module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="spython.instance.cmd.html#module-spython.instance.cmd.stop">spython.instance.cmd.stop module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="spython.instance.cmd.html#module-spython.instance.cmd">Module contents</a></li>
@@ -266,14 +181,14 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to thi
 </div>
 </div>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.version">
-<span id="spython-version-module"></span><h2>spython.version module<a class="headerlink" href="#module-spython.version" title="Permalink to this headline">¶</a></h2>
+<span id="spython-version-module"></span><h2>spython.version module<a class="headerlink" href="#module-spython.version" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython" title="Permalink to this headline">¶</a></h2>
-<p>Copyright (C) 2017-2021 Vanessa Sochat.</p>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython" title="Permalink to this headline"></a></h2>
+<p>Copyright (C) 2017-2022 Vanessa Sochat.</p>
 <p>This Source Code Form is subject to the terms of the
 Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed
 with this file, You can obtain one at <a class="reference external" href="http://mozilla.org/MPL/2.0/">http://mozilla.org/MPL/2.0/</a>.</p>
@@ -282,58 +197,33 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 
            </div>
-           
           </div>
-          <footer>
-  
-    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
-      
-        <a href="spython.client.html" class="btn btn-neutral float-right" title="spython.client package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
-      
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+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+        <a href="spython.client.html" class="btn btn-neutral float-right" title="spython.client package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
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-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-</footer>
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
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diff --git a/docs/api/source/spython.image.cmd.html b/docs/api/source/spython.image.cmd.html
index 94a7582b..534c04b6 100644
--- a/docs/api/source/spython.image.cmd.html
+++ b/docs/api/source/spython.image.cmd.html
@@ -1,71 +1,36 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.image.cmd package &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
-
-  
-  
-  
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+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
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     <script src="../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
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+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
         <script src="../assets/jquery.js"></script>
         <script src="../assets/underscore.js"></script>
         <script src="../assets/doctools.js"></script>
-    
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+    <script src="../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="spython.instance package" href="spython.instance.html" />
     <link rel="prev" title="spython.image package" href="spython.image.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
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-            
-            
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                 0.0
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-
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -73,18 +38,7 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
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 <li class="toctree-l1 current"><a class="reference internal" href="spython.html">spython package</a><ul class="current">
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@@ -107,224 +61,83 @@
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 </ul>
 
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   <ul class="wy-breadcrumbs">
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           <li><a href="spython.html">spython package</a> &raquo;</li>
-        
           <li><a href="spython.image.html">spython.image package</a> &raquo;</li>
-        
       <li>spython.image.cmd package</li>
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-            
+             
   <div class="section" id="spython-image-cmd-package">
-<h1>spython.image.cmd package<a class="headerlink" href="#spython-image-cmd-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.image.cmd package<a class="headerlink" href="#spython-image-cmd-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
-<div class="section" id="module-spython.image.cmd.create">
-<span id="spython-image-cmd-create-module"></span><h2>spython.image.cmd.create module<a class="headerlink" href="#module-spython.image.cmd.create" title="Permalink to this headline">¶</a></h2>
-<dl class="py function">
-<dt id="spython.image.cmd.create.create">
-<code class="sig-prename descclassname">spython.image.cmd.create.</code><code class="sig-name descname">create</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image_path</span></em>, <em class="sig-param"><span class="n">size</span><span class="o">=</span><span class="default_value">1024</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image/cmd/create.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.cmd.create.create" title="Permalink to this definition">¶</a></dt>
-<dd><p>create will create a a new image</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image_path</strong> (<em>full path to image</em>)</p></li>
-<li><p><strong>size</strong> (<em>image sizein MiB, default is 1024MiB</em>)</p></li>
-<li><p><strong>filesystem</strong> (<em>supported file systems ext3/ext4 (ext[2/3]: default ext3</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
+<div class="section" id="spython-image-cmd-create-module">
+<h2>spython.image.cmd.create module<a class="headerlink" href="#spython-image-cmd-create-module" title="Permalink to this headline"></a></h2>
 </div>
-<div class="section" id="module-spython.image.cmd.export">
-<span id="spython-image-cmd-export-module"></span><h2>spython.image.cmd.export module<a class="headerlink" href="#module-spython.image.cmd.export" title="Permalink to this headline">¶</a></h2>
-<dl class="py function">
-<dt id="spython.image.cmd.export.export">
-<code class="sig-prename descclassname">spython.image.cmd.export.</code><code class="sig-name descname">export</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image_path</span></em>, <em class="sig-param"><span class="n">tmptar</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image/cmd/export.html#export"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.cmd.export.export" title="Permalink to this definition">¶</a></dt>
-<dd><p>export will export an image, sudo must be used.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image_path</strong> (<em>full path to image</em>)</p></li>
-<li><p><strong>tmptar</strong> (<em>if defined, use custom temporary path for tar export</em>)</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
+<div class="section" id="spython-image-cmd-export-module">
+<h2>spython.image.cmd.export module<a class="headerlink" href="#spython-image-cmd-export-module" title="Permalink to this headline"></a></h2>
 </div>
-<div class="section" id="module-spython.image.cmd.importcmd">
-<span id="spython-image-cmd-importcmd-module"></span><h2>spython.image.cmd.importcmd module<a class="headerlink" href="#module-spython.image.cmd.importcmd" title="Permalink to this headline">¶</a></h2>
-<dl class="py function">
-<dt id="spython.image.cmd.importcmd.importcmd">
-<code class="sig-prename descclassname">spython.image.cmd.importcmd.</code><code class="sig-name descname">importcmd</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image_path</span></em>, <em class="sig-param"><span class="n">input_source</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image/cmd/importcmd.html#importcmd"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.cmd.importcmd.importcmd" title="Permalink to this definition">¶</a></dt>
-<dd><p>import will import (stdin) to the image</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image_path</strong> (<em>path to image to import to.</em>)</p></li>
-<li><p><strong>input_source</strong> (<em>input source or file</em>)</p></li>
-<li><p><strong>import_type</strong> (<em>if not specified, imports whatever function is given</em>)</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
+<div class="section" id="spython-image-cmd-importcmd-module">
+<h2>spython.image.cmd.importcmd module<a class="headerlink" href="#spython-image-cmd-importcmd-module" title="Permalink to this headline"></a></h2>
 </div>
-<div class="section" id="module-spython.image.cmd.utils">
-<span id="spython-image-cmd-utils-module"></span><h2>spython.image.cmd.utils module<a class="headerlink" href="#module-spython.image.cmd.utils" title="Permalink to this headline">¶</a></h2>
-<dl class="py function">
-<dt id="spython.image.cmd.utils.compress">
-<code class="sig-prename descclassname">spython.image.cmd.utils.</code><code class="sig-name descname">compress</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image_path</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image/cmd/utils.html#compress"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.cmd.utils.compress" title="Permalink to this definition">¶</a></dt>
-<dd><p>compress will (properly) compress an image</p>
-</dd></dl>
-
-<dl class="py function">
-<dt id="spython.image.cmd.utils.decompress">
-<code class="sig-prename descclassname">spython.image.cmd.utils.</code><code class="sig-name descname">decompress</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image_path</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">True</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image/cmd/utils.html#decompress"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.cmd.utils.decompress" title="Permalink to this definition">¶</a></dt>
-<dd><p>decompress will (properly) decompress an image</p>
-</dd></dl>
-
+<div class="section" id="spython-image-cmd-utils-module">
+<h2>spython.image.cmd.utils module<a class="headerlink" href="#spython-image-cmd-utils-module" title="Permalink to this headline"></a></h2>
 </div>
-<div class="section" id="module-spython.image.cmd">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.image.cmd" title="Permalink to this headline">¶</a></h2>
-<dl class="py function">
-<dt id="spython.image.cmd.generate_image_commands">
-<code class="sig-prename descclassname">spython.image.cmd.</code><code class="sig-name descname">generate_image_commands</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image/cmd.html#generate_image_commands"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.cmd.generate_image_commands" title="Permalink to this definition">¶</a></dt>
-<dd><p>The Image client holds the Singularity image command group, mainly
-deprecated commands (image.import) and additional command helpers
-that are commonly use but not provided by Singularity</p>
-<p>The levels of verbosity (debug and quiet) are passed from the main
-client via the environment variable MESSAGELEVEL.</p>
-<p>These commands are added to Client.image under main/__init__.py to
-expose subcommands:</p>
-<blockquote>
-<div><p>Client.image.export
-Client.image.imprt
-Client.image.decompress
-Client.image.create</p>
-</div></blockquote>
-</dd></dl>
-
+<div class="section" id="module-contents">
+<h2>Module contents<a class="headerlink" href="#module-contents" title="Permalink to this headline"></a></h2>
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diff --git a/docs/api/source/spython.image.html b/docs/api/source/spython.image.html
index 0b29d110..44473a12 100644
--- a/docs/api/source/spython.image.html
+++ b/docs/api/source/spython.image.html
@@ -1,71 +1,36 @@
-
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-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
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-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
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+             
   <div class="section" id="spython-image-package">
-<h1>spython.image package<a class="headerlink" href="#spython-image-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.image package<a class="headerlink" href="#spython-image-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="subpackages">
-<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline">¶</a></h2>
+<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline"></a></h2>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="spython.image.cmd.html">spython.image.cmd package</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#submodules">Submodules</a></li>
-<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd.create">spython.image.cmd.create module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd.export">spython.image.cmd.export module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd.importcmd">spython.image.cmd.importcmd module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd.utils">spython.image.cmd.utils module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#module-spython.image.cmd">Module contents</a></li>
+<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#spython-image-cmd-create-module">spython.image.cmd.create module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#spython-image-cmd-export-module">spython.image.cmd.export module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#spython-image-cmd-importcmd-module">spython.image.cmd.importcmd module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#spython-image-cmd-utils-module">spython.image.cmd.utils module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="spython.image.cmd.html#module-contents">Module contents</a></li>
 </ul>
 </li>
 </ul>
 </div>
 </div>
 <div class="section" id="module-spython.image">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.image" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.image" title="Permalink to this headline"></a></h2>
 <dl class="py class">
-<dt id="spython.image.Image">
-<em class="property">class </em><code class="sig-prename descclassname">spython.image.</code><code class="sig-name descname">Image</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image.html#Image"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.Image" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.image.Image">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><code class="sig-prename descclassname"><span class="pre">spython.image.</span></code><code class="sig-name descname"><span class="pre">Image</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image.html#Image"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.image.Image" title="Permalink to this definition"></a></dt>
 <dd><p>Bases: <a class="reference internal" href="#spython.image.ImageBase" title="spython.image.ImageBase"><code class="xref py py-class docutils literal notranslate"><span class="pre">spython.image.ImageBase</span></code></a></p>
 <dl class="py method">
-<dt id="spython.image.Image.get_hash">
-<code class="sig-name descname">get_hash</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image.html#Image.get_hash"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.Image.get_hash" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.image.Image.get_hash">
+<code class="sig-name descname"><span class="pre">get_hash</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image.html#Image.get_hash"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.image.Image.get_hash" title="Permalink to this definition"></a></dt>
 <dd><p>return an md5 hash of the file based on a criteria level. This
 is intended to give the file a reasonable version. This only is
 useful for actual image files.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>image</strong> (<em>the image path to get hash for (first priority). Second</em>) – priority is image path saved with image object, if exists.</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>image</strong> (<em>the image path to get hash for (first priority). Second</em>) – priority is image path saved with image object, if exists.</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </dd></dl>
 
 <dl class="py class">
-<dt id="spython.image.ImageBase">
-<em class="property">class </em><code class="sig-prename descclassname">spython.image.</code><code class="sig-name descname">ImageBase</code><a class="reference internal" href="../modules/spython/image.html#ImageBase"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.ImageBase" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dt class="sig sig-object py" id="spython.image.ImageBase">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><code class="sig-prename descclassname"><span class="pre">spython.image.</span></code><code class="sig-name descname"><span class="pre">ImageBase</span></code><a class="reference internal" href="../modules/spython/image.html#ImageBase"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.image.ImageBase" title="Permalink to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.10)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <dl class="py method">
-<dt id="spython.image.ImageBase.parse_image_name">
-<code class="sig-name descname">parse_image_name</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image.html#ImageBase.parse_image_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.image.ImageBase.parse_image_name" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.image.ImageBase.parse_image_name">
+<code class="sig-name descname"><span class="pre">parse_image_name</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/image.html#ImageBase.parse_image_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.image.ImageBase.parse_image_name" title="Permalink to this definition"></a></dt>
 <dd><p>simply split the uri from the image. Singularity handles
 parsing of registry, namespace, image.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>image</strong> (<em>the complete image uri to load (e.g., docker://ubuntu)</em>)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>image</strong> (<em>the complete image uri to load (e.g., docker://ubuntu)</em>)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </dd></dl>
@@ -234,58 +154,33 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to thi
 
 
            </div>
-           
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+        <a href="spython.image.cmd.html" class="btn btn-neutral float-right" title="spython.image.cmd package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
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-    <p>
-        
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
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diff --git a/docs/api/source/spython.instance.cmd.html b/docs/api/source/spython.instance.cmd.html
index 3050a2fa..55fd665d 100644
--- a/docs/api/source/spython.instance.cmd.html
+++ b/docs/api/source/spython.instance.cmd.html
@@ -1,71 +1,36 @@
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+<html class="writer-html4" lang="en" >
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+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
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-          
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-          
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+            <a href="../index.html" class="icon icon-home"> Singularity Python API
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     <input type="text" name="q" placeholder="Search docs" />
@@ -73,18 +38,7 @@
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
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            <div itemprop="articleBody">
-            
+             
   <div class="section" id="spython-instance-cmd-package">
-<h1>spython.instance.cmd package<a class="headerlink" href="#spython-instance-cmd-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.instance.cmd package<a class="headerlink" href="#spython-instance-cmd-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
-<div class="section" id="module-spython.instance.cmd.iutils">
-<span id="spython-instance-cmd-iutils-module"></span><h2>spython.instance.cmd.iutils module<a class="headerlink" href="#module-spython.instance.cmd.iutils" title="Permalink to this headline">¶</a></h2>
-<dl class="py function">
-<dt id="spython.instance.cmd.iutils.get">
-<code class="sig-prename descclassname">spython.instance.cmd.iutils.</code><code class="sig-name descname">get</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">name</span></em>, <em class="sig-param"><span class="n">return_json</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance/cmd/iutils.html#get"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.cmd.iutils.get" title="Permalink to this definition">¶</a></dt>
-<dd><p>get is a list for a single instance. It is assumed to be running,
-and we need to look up the PID, etc.</p>
-</dd></dl>
-
-<dl class="py function">
-<dt id="spython.instance.cmd.iutils.parse_table">
-<code class="sig-prename descclassname">spython.instance.cmd.iutils.</code><code class="sig-name descname">parse_table</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">table_string</span></em>, <em class="sig-param"><span class="n">header</span></em>, <em class="sig-param"><span class="n">remove_rows</span><span class="o">=</span><span class="default_value">1</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance/cmd/iutils.html#parse_table"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.cmd.iutils.parse_table" title="Permalink to this definition">¶</a></dt>
-<dd><p>parse a table to json from a string, where a header is expected by default.
-Return a jsonified table.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>table_string</strong> (<em>the string table, ideally with a header</em>)</p></li>
-<li><p><strong>header</strong> (<em>header of expected table, must match dimension (number columns)</em>)</p></li>
-<li><p><strong>remove_rows</strong> (<em>an integer to indicate a number of rows to remove from top</em>) – the default is 1 assuming we don’t want the header</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
+<div class="section" id="spython-instance-cmd-iutils-module">
+<h2>spython.instance.cmd.iutils module<a class="headerlink" href="#spython-instance-cmd-iutils-module" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.instance.cmd.start">
-<span id="spython-instance-cmd-start-module"></span><h2>spython.instance.cmd.start module<a class="headerlink" href="#module-spython.instance.cmd.start" title="Permalink to this headline">¶</a></h2>
+<span id="spython-instance-cmd-start-module"></span><h2>spython.instance.cmd.start module<a class="headerlink" href="#module-spython.instance.cmd.start" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.instance.cmd.start.start">
-<code class="sig-prename descclassname">spython.instance.cmd.start.</code><code class="sig-name descname">start</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">args</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">capture</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">environ</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance/cmd/start.html#start"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.cmd.start.start" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.cmd.start.start">
+<code class="sig-prename descclassname"><span class="pre">spython.instance.cmd.start.</span></code><code class="sig-name descname"><span class="pre">start</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">args</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">capture</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">environ</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance/cmd/start.html#start"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.instance.cmd.start.start" title="Permalink to this definition"></a></dt>
 <dd><p>start an instance. This is done by default when an instance is created.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>optionally, an image uri (if called as a command from Client)</em>)</p></li>
-<li><p><strong>name</strong> (<em>a name for the instance</em>)</p></li>
-<li><p><strong>sudo</strong> (<em>if the user wants to run the command with sudo</em>)</p></li>
-<li><p><strong>capture</strong> (<em>capture output, default is False. With True likely to hang.</em>)</p></li>
-<li><p><strong>args</strong> (<em>arguments to provide to the instance (supported Singularity 3.1+)</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>options</strong> (<em>a list of tuples, each an option to give to the start command</em>) – [(“–bind”, “/tmp”),…]</p></li>
-<li><p><strong>USAGE</strong></p></li>
-<li><p><strong>singularity […] instance.start […] &lt;container path&gt; &lt;instance name&gt;</strong></p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>optionally, an image uri (if called as a command from Client)</em>)</li>
+<li><strong>name</strong> (<em>a name for the instance</em>)</li>
+<li><strong>sudo</strong> (<em>if the user wants to run the command with sudo</em>)</li>
+<li><strong>capture</strong> (<em>capture output, default is False. With True likely to hang.</em>)</li>
+<li><strong>args</strong> (<em>arguments to provide to the instance (supported Singularity 3.1+)</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>quiet</strong> (<em>Do not print verbose output.</em>)</li>
+<li><strong>options</strong> (<em>a list of tuples, each an option to give to the start command</em>) – [(“–bind”, “/tmp”),…]</li>
+<li><strong>USAGE</strong></li>
+<li><strong>singularity […] instance.start […] &lt;container path&gt; &lt;instance name&gt;</strong></li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.instance.cmd.stop">
-<span id="spython-instance-cmd-stop-module"></span><h2>spython.instance.cmd.stop module<a class="headerlink" href="#module-spython.instance.cmd.stop" title="Permalink to this headline">¶</a></h2>
+<span id="spython-instance-cmd-stop-module"></span><h2>spython.instance.cmd.stop module<a class="headerlink" href="#module-spython.instance.cmd.stop" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.instance.cmd.stop.stop">
-<code class="sig-prename descclassname">spython.instance.cmd.stop.</code><code class="sig-name descname">stop</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">timeout</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance/cmd/stop.html#stop"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.cmd.stop.stop" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.cmd.stop.stop">
+<code class="sig-prename descclassname"><span class="pre">spython.instance.cmd.stop.</span></code><code class="sig-name descname"><span class="pre">stop</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance/cmd/stop.html#stop"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.instance.cmd.stop.stop" title="Permalink to this definition"></a></dt>
 <dd><p>stop an instance. This is done by default when an instance is created.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>name</strong> (<em>a name for the instance</em>)</p></li>
-<li><p><strong>sudo</strong> (<em>if the user wants to run the command with sudo</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>timeout</strong> (<em>forcebly kill non-stopped instance after the</em>) – timeout specified in seconds</p></li>
-<li><p><strong>USAGE</strong></p></li>
-<li><p><strong>singularity […] instance.stop […] &lt;instance name&gt;</strong></p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>name</strong> (<em>a name for the instance</em>)</li>
+<li><strong>sudo</strong> (<em>if the user wants to run the command with sudo</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>quiet</strong> (<em>Do not print verbose output.</em>)</li>
+<li><strong>timeout</strong> (<em>forcebly kill non-stopped instance after the</em>) – timeout specified in seconds</li>
+<li><strong>USAGE</strong></li>
+<li><strong>singularity […] instance.stop […] &lt;instance name&gt;</strong></li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.instance.cmd">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.instance.cmd" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.instance.cmd" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.instance.cmd.generate_instance_commands">
-<code class="sig-prename descclassname">spython.instance.cmd.</code><code class="sig-name descname">generate_instance_commands</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance/cmd.html#generate_instance_commands"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.cmd.generate_instance_commands" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.cmd.generate_instance_commands">
+<code class="sig-prename descclassname"><span class="pre">spython.instance.cmd.</span></code><code class="sig-name descname"><span class="pre">generate_instance_commands</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance/cmd.html#generate_instance_commands"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.instance.cmd.generate_instance_commands" title="Permalink to this definition"></a></dt>
 <dd><p>The Instance client holds the Singularity Instance command group
 The levels of verbosity (debug and quiet) are passed from the main
 client via the environment variable MESSAGELEVEL.</p>
@@ -265,58 +165,33 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 
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diff --git a/docs/api/source/spython.instance.html b/docs/api/source/spython.instance.html
index 39fee120..d0f6fe95 100644
--- a/docs/api/source/spython.instance.html
+++ b/docs/api/source/spython.instance.html
@@ -1,71 +1,36 @@
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+             
   <div class="section" id="spython-instance-package">
-<h1>spython.instance package<a class="headerlink" href="#spython-instance-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.instance package<a class="headerlink" href="#spython-instance-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="subpackages">
-<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline">¶</a></h2>
+<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline"></a></h2>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="spython.instance.cmd.html">spython.instance.cmd package</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="spython.instance.cmd.html#submodules">Submodules</a></li>
-<li class="toctree-l2"><a class="reference internal" href="spython.instance.cmd.html#module-spython.instance.cmd.iutils">spython.instance.cmd.iutils module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="spython.instance.cmd.html#spython-instance-cmd-iutils-module">spython.instance.cmd.iutils module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="spython.instance.cmd.html#module-spython.instance.cmd.start">spython.instance.cmd.start module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="spython.instance.cmd.html#module-spython.instance.cmd.stop">spython.instance.cmd.stop module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="spython.instance.cmd.html#module-spython.instance.cmd">Module contents</a></li>
@@ -190,158 +104,181 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to thi
 </div>
 </div>
 <div class="section" id="module-spython.instance">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.instance" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.instance" title="Permalink to this headline"></a></h2>
 <dl class="py class">
-<dt id="spython.instance.Instance">
-<em class="property">class </em><code class="sig-prename descclassname">spython.instance.</code><code class="sig-name descname">Instance</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span></em>, <em class="sig-param"><span class="n">start</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.Instance" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><code class="sig-prename descclassname"><span class="pre">spython.instance.</span></code><code class="sig-name descname"><span class="pre">Instance</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span></em>, <em><span class="n"><span class="pre">start</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.instance.Instance" title="Permalink to this definition"></a></dt>
 <dd><p>Bases: <a class="reference internal" href="spython.image.html#spython.image.ImageBase" title="spython.image.ImageBase"><code class="xref py py-class docutils literal notranslate"><span class="pre">spython.image.ImageBase</span></code></a></p>
 <dl class="py attribute">
-<dt id="spython.instance.Instance.RobotNamer">
-<code class="sig-name descname">RobotNamer</code><em class="property"> = &lt;spython.main.base.generate.RobotNamer object&gt;</em><a class="headerlink" href="#spython.instance.Instance.RobotNamer" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.RobotNamer">
+<code class="sig-name descname"><span class="pre">RobotNamer</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">&lt;spython.main.base.generate.RobotNamer</span> <span class="pre">object&gt;</span></em><a class="headerlink" href="#spython.instance.Instance.RobotNamer" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.instance.Instance.debug">
-<code class="sig-name descname">debug</code><em class="property"> = False</em><a class="headerlink" href="#spython.instance.Instance.debug" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.debug">
+<code class="sig-name descname"><span class="pre">debug</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">False</span></em><a class="headerlink" href="#spython.instance.Instance.debug" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.error_logs">
-<code class="sig-name descname">error_logs</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">print_logs</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.error_logs" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.error_logs">
+<code class="sig-name descname"><span class="pre">error_logs</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">print_logs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.error_logs" title="Permalink to this definition"></a></dt>
 <dd><p>For Singularity 3.5 and later, we are able to programatically
 derive the name of the log. In this case, return the content
 to the user. See
 <a class="reference external" href="https://github.com/sylabs/singularity/issues/1115#issuecomment-560457918">https://github.com/sylabs/singularity/issues/1115#issuecomment-560457918</a>
 for when this was added.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>print_logs</strong> (<em>boolean to indicate to print to the screen along with</em>) – return (defaults to False to just return log string)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>print_logs</strong> (<em>boolean to indicate to print to the screen along with</em>) – return (defaults to False to just return log string)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.generate_name">
-<code class="sig-name descname">generate_name</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.generate_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.Instance.generate_name" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.generate_name">
+<code class="sig-name descname"><span class="pre">generate_name</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.generate_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.instance.Instance.generate_name" title="Permalink to this definition"></a></dt>
 <dd><p>generate a Robot Name for the instance to use, if the user doesn’t
 supply one.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.get_uri">
-<code class="sig-name descname">get_uri</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.get_uri"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.Instance.get_uri" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.get_uri">
+<code class="sig-name descname"><span class="pre">get_uri</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.get_uri"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.instance.Instance.get_uri" title="Permalink to this definition"></a></dt>
 <dd><p>return the image uri (instance://) along with it’s name</p>
 </dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.instance.Instance.instance">
-<code class="sig-name descname">instance</code><a class="headerlink" href="#spython.instance.Instance.instance" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.instance">
+<code class="sig-name descname"><span class="pre">instance</span></code><a class="headerlink" href="#spython.instance.Instance.instance" title="Permalink to this definition"></a></dt>
 <dd><p>alias of <a class="reference internal" href="#spython.instance.Instance" title="spython.instance.Instance"><code class="xref py py-class docutils literal notranslate"><span class="pre">spython.instance.Instance</span></code></a></p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.output_logs">
-<code class="sig-name descname">output_logs</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">print_logs</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.output_logs" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.output_logs">
+<code class="sig-name descname"><span class="pre">output_logs</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">print_logs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.output_logs" title="Permalink to this definition"></a></dt>
 <dd><p>Get output logs for the user, if they exist.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>print_logs</strong> (<em>boolean to indicate to print to the screen along with</em>) – return (defaults to False to just return log string)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>print_logs</strong> (<em>boolean to indicate to print to the screen along with</em>) – return (defaults to False to just return log string)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.parse_image_name">
-<code class="sig-name descname">parse_image_name</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.parse_image_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.Instance.parse_image_name" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.parse_image_name">
+<code class="sig-name descname"><span class="pre">parse_image_name</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.parse_image_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.instance.Instance.parse_image_name" title="Permalink to this definition"></a></dt>
 <dd><p>simply split the uri from the image. Singularity handles
 parsing of registry, namespace, image.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>image</strong> (<em>the complete image uri to load (e.g., docker://ubuntu)</em>)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>image</strong> (<em>the complete image uri to load (e.g., docker://ubuntu)</em>)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.instance.Instance.quiet">
-<code class="sig-name descname">quiet</code><em class="property"> = False</em><a class="headerlink" href="#spython.instance.Instance.quiet" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.quiet">
+<code class="sig-name descname"><span class="pre">quiet</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">False</span></em><a class="headerlink" href="#spython.instance.Instance.quiet" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.read_logs_err">
-<code class="sig-name descname">read_logs_err</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.read_logs_err"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.Instance.read_logs_err" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.read_logs_err">
+<code class="sig-name descname"><span class="pre">read_logs_err</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.read_logs_err"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.instance.Instance.read_logs_err" title="Permalink to this definition"></a></dt>
 <dd><p>Read error log file, if it exists</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.read_logs_out">
-<code class="sig-name descname">read_logs_out</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.read_logs_out"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.instance.Instance.read_logs_out" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.read_logs_out">
+<code class="sig-name descname"><span class="pre">read_logs_out</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/instance.html#Instance.read_logs_out"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.instance.Instance.read_logs_out" title="Permalink to this definition"></a></dt>
 <dd><p>Read output log file, if it exists</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.run_command">
-<code class="sig-name descname">run_command</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">capture</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">no_newline_regexp</span><span class="o">=</span><span class="default_value">'Progess'</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">environ</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.run_command" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.run_command">
+<code class="sig-name descname"><span class="pre">run_command</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">capture</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">no_newline_regexp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Progess'</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">environ</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.run_command" title="Permalink to this definition"></a></dt>
 <dd><p>run_command uses subprocess to send a command to the terminal. If
 capture is True, we use the parent stdout, so the progress bar (and
 other commands of interest) are piped to the user. This means we
 don’t return the output to parse.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>cmd</strong> (<em>the command to send, should be a list for subprocess</em>)</p></li>
-<li><p><strong>sudo</strong> (<em>if needed, add to start of command</em>)</p></li>
-<li><p><strong>no_newline_regexp</strong> (<em>the regular expression to determine skipping a</em>) – newline. Defaults to finding Progress</p></li>
-<li><p><strong>capture</strong> (<em>if True, don’t set stdout and have it go to console. This</em>) – option can print a progress bar, but won’t return the lines
-as output.</p></li>
-<li><p><strong>sudo_options</strong> (<em>string or list of strings that will be passed as options to sudo</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>cmd</strong> (<em>the command to send, should be a list for subprocess</em>)</li>
+<li><strong>sudo</strong> (<em>if needed, add to start of command</em>)</li>
+<li><strong>no_newline_regexp</strong> (<em>the regular expression to determine skipping a</em>) – newline. Defaults to finding Progress</li>
+<li><strong>capture</strong> (<em>if True, don’t set stdout and have it go to console. This</em>) – option can print a progress bar, but won’t return the lines
+as output.</li>
+<li><strong>sudo_options</strong> (<em>string or list of strings that will be passed as options to sudo</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.start">
-<code class="sig-name descname">start</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">args</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">capture</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">environ</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.start" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.start">
+<code class="sig-name descname"><span class="pre">start</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">args</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">capture</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">environ</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.start" title="Permalink to this definition"></a></dt>
 <dd><p>start an instance. This is done by default when an instance is created.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>optionally, an image uri (if called as a command from Client)</em>)</p></li>
-<li><p><strong>name</strong> (<em>a name for the instance</em>)</p></li>
-<li><p><strong>sudo</strong> (<em>if the user wants to run the command with sudo</em>)</p></li>
-<li><p><strong>capture</strong> (<em>capture output, default is False. With True likely to hang.</em>)</p></li>
-<li><p><strong>args</strong> (<em>arguments to provide to the instance (supported Singularity 3.1+)</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>options</strong> (<em>a list of tuples, each an option to give to the start command</em>) – [(“–bind”, “/tmp”),…]</p></li>
-<li><p><strong>USAGE</strong></p></li>
-<li><p><strong>singularity […] instance.start […] &lt;container path&gt; &lt;instance name&gt;</strong></p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>optionally, an image uri (if called as a command from Client)</em>)</li>
+<li><strong>name</strong> (<em>a name for the instance</em>)</li>
+<li><strong>sudo</strong> (<em>if the user wants to run the command with sudo</em>)</li>
+<li><strong>capture</strong> (<em>capture output, default is False. With True likely to hang.</em>)</li>
+<li><strong>args</strong> (<em>arguments to provide to the instance (supported Singularity 3.1+)</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>quiet</strong> (<em>Do not print verbose output.</em>)</li>
+<li><strong>options</strong> (<em>a list of tuples, each an option to give to the start command</em>) – [(“–bind”, “/tmp”),…]</li>
+<li><strong>USAGE</strong></li>
+<li><strong>singularity […] instance.start […] &lt;container path&gt; &lt;instance name&gt;</strong></li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.stop">
-<code class="sig-name descname">stop</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">timeout</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.stop" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.stop">
+<code class="sig-name descname"><span class="pre">stop</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">timeout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.stop" title="Permalink to this definition"></a></dt>
 <dd><p>stop an instance. This is done by default when an instance is created.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>name</strong> (<em>a name for the instance</em>)</p></li>
-<li><p><strong>sudo</strong> (<em>if the user wants to run the command with sudo</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>timeout</strong> (<em>forcebly kill non-stopped instance after the</em>) – timeout specified in seconds</p></li>
-<li><p><strong>USAGE</strong></p></li>
-<li><p><strong>singularity […] instance.stop […] &lt;instance name&gt;</strong></p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>name</strong> (<em>a name for the instance</em>)</li>
+<li><strong>sudo</strong> (<em>if the user wants to run the command with sudo</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>quiet</strong> (<em>Do not print verbose output.</em>)</li>
+<li><strong>timeout</strong> (<em>forcebly kill non-stopped instance after the</em>) – timeout specified in seconds</li>
+<li><strong>USAGE</strong></li>
+<li><strong>singularity […] instance.stop […] &lt;instance name&gt;</strong></li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.instance.Instance.version">
-<code class="sig-name descname">version</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.version" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.instance.Instance.version">
+<code class="sig-name descname"><span class="pre">version</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#spython.instance.Instance.version" title="Permalink to this definition"></a></dt>
 <dd><p>Shortcut to get_singularity_version, takes no arguments.</p>
 </dd></dl>
 
@@ -352,58 +289,33 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to thi
 
 
            </div>
-           
           </div>
-          <footer>
-  
-    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
-      
-        <a href="spython.instance.cmd.html" class="btn btn-neutral float-right" title="spython.instance.cmd package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
-      
-      
-        <a href="spython.image.cmd.html" class="btn btn-neutral float-left" title="spython.image.cmd package" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
-      
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="spython.image.cmd.html" class="btn btn-neutral float-left" title="spython.image.cmd package" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="spython.instance.cmd.html" class="btn btn-neutral float-right" title="spython.instance.cmd package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
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-
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-  
-
-  <script type="text/javascript">
+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
-  </script>
-
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-  
-    
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+  </script> 
 
 </body>
 </html>
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diff --git a/docs/api/source/spython.logger.html b/docs/api/source/spython.logger.html
index 82232b0d..5e881c9e 100644
--- a/docs/api/source/spython.logger.html
+++ b/docs/api/source/spython.logger.html
@@ -1,71 +1,36 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.logger package &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
-
-  
-  
-  
-  
-
-  
+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../" src="../assets/documentation_options.js"></script>
+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
         <script src="../assets/jquery.js"></script>
         <script src="../assets/underscore.js"></script>
         <script src="../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../assets/js/theme.js"></script>
-
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+    <script src="../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="spython.main package" href="spython.main.html" />
     <link rel="prev" title="spython.instance.cmd package" href="spython.instance.cmd.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
-          
-            
-            
               <div class="version">
                 0.0
               </div>
-            
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-          
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -73,18 +38,7 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
-          
-        </div>
-
-        
-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-          
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               <ul class="current">
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@@ -110,112 +64,72 @@
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           <a href="../index.html">Singularity Python API</a>
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   <div class="section" id="spython-logger-package">
-<h1>spython.logger package<a class="headerlink" href="#spython-logger-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.logger package<a class="headerlink" href="#spython-logger-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.logger.message">
-<span id="spython-logger-message-module"></span><h2>spython.logger.message module<a class="headerlink" href="#module-spython.logger.message" title="Permalink to this headline">¶</a></h2>
+<span id="spython-logger-message-module"></span><h2>spython.logger.message module<a class="headerlink" href="#module-spython.logger.message" title="Permalink to this headline"></a></h2>
 <dl class="py class">
-<dt id="spython.logger.message.SingularityMessage">
-<em class="property">class </em><code class="sig-prename descclassname">spython.logger.message.</code><code class="sig-name descname">SingularityMessage</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">MESSAGELEVEL</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><code class="sig-prename descclassname"><span class="pre">spython.logger.message.</span></code><code class="sig-name descname"><span class="pre">SingularityMessage</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">MESSAGELEVEL</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage" title="Permalink to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.10)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.abort">
-<code class="sig-name descname">abort</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.abort"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.abort" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.abort">
+<code class="sig-name descname"><span class="pre">abort</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.abort"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.abort" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.addColor">
-<code class="sig-name descname">addColor</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">level</span></em>, <em class="sig-param"><span class="n">text</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.addColor"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.addColor" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.addColor">
+<code class="sig-name descname"><span class="pre">addColor</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">level</span></span></em>, <em><span class="n"><span class="pre">text</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.addColor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.addColor" title="Permalink to this definition"></a></dt>
 <dd><p>addColor to the prompt (usually prefix) if terminal
 supports, and specified to do so</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.critical">
-<code class="sig-name descname">critical</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.critical"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.critical" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.critical">
+<code class="sig-name descname"><span class="pre">critical</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.critical"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.critical" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.custom">
-<code class="sig-name descname">custom</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">prefix</span></em>, <em class="sig-param"><span class="n">message</span></em>, <em class="sig-param"><span class="n">color</span><span class="o">=</span><span class="default_value">'\x1b[95m'</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.custom"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.custom" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.custom">
+<code class="sig-name descname"><span class="pre">custom</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">prefix</span></span></em>, <em><span class="n"><span class="pre">message</span></span></em>, <em><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'\x1b[95m'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.custom"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.custom" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.debug">
-<code class="sig-name descname">debug</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.debug"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.debug" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.debug">
+<code class="sig-name descname"><span class="pre">debug</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.debug"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.debug" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.emit">
-<code class="sig-name descname">emit</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">level</span></em>, <em class="sig-param"><span class="n">message</span></em>, <em class="sig-param"><span class="n">prefix</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">color</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.emit"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.emit" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.emit">
+<code class="sig-name descname"><span class="pre">emit</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">level</span></span></em>, <em><span class="n"><span class="pre">message</span></span></em>, <em><span class="n"><span class="pre">prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.emit"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.emit" title="Permalink to this definition"></a></dt>
 <dd><p>emit is the main function to print the message
 optionally with a prefix
 :param level: the level of the message
@@ -224,71 +138,71 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.emitError">
-<code class="sig-name descname">emitError</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">level</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.emitError"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.emitError" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.emitError">
+<code class="sig-name descname"><span class="pre">emitError</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">level</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.emitError"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.emitError" title="Permalink to this definition"></a></dt>
 <dd><p>determine if a level should print to
 stderr, includes all levels but INFO and QUIET</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.emitOutput">
-<code class="sig-name descname">emitOutput</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">level</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.emitOutput"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.emitOutput" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.emitOutput">
+<code class="sig-name descname"><span class="pre">emitOutput</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">level</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.emitOutput"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.emitOutput" title="Permalink to this definition"></a></dt>
 <dd><p>determine if a level should print to stdout
 only includes INFO</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.error">
-<code class="sig-name descname">error</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.error"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.error" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.error">
+<code class="sig-name descname"><span class="pre">error</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.error"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.error" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.exit">
-<code class="sig-name descname">exit</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em>, <em class="sig-param"><span class="n">return_code</span><span class="o">=</span><span class="default_value">1</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.exit"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.exit" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.exit">
+<code class="sig-name descname"><span class="pre">exit</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em>, <em><span class="n"><span class="pre">return_code</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.exit"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.exit" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.get_logs">
-<code class="sig-name descname">get_logs</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">join_newline</span><span class="o">=</span><span class="default_value">True</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.get_logs"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.get_logs" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.get_logs">
+<code class="sig-name descname"><span class="pre">get_logs</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">join_newline</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.get_logs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.get_logs" title="Permalink to this definition"></a></dt>
 <dd><p>‘get_logs will return the complete history, joined by newline
 (default) or as is.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.info">
-<code class="sig-name descname">info</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.info" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.info">
+<code class="sig-name descname"><span class="pre">info</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.info" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.isEnabledFor">
-<code class="sig-name descname">isEnabledFor</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">messageLevel</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.isEnabledFor"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.isEnabledFor" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.isEnabledFor">
+<code class="sig-name descname"><span class="pre">isEnabledFor</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">messageLevel</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.isEnabledFor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.isEnabledFor" title="Permalink to this definition"></a></dt>
 <dd><p>check if a messageLevel is enabled to emit a level</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.is_quiet">
-<code class="sig-name descname">is_quiet</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.is_quiet"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.is_quiet" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.is_quiet">
+<code class="sig-name descname"><span class="pre">is_quiet</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.is_quiet"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.is_quiet" title="Permalink to this definition"></a></dt>
 <dd><p>is_quiet returns true if the level is under 1</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.log">
-<code class="sig-name descname">log</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.log"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.log" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.log">
+<code class="sig-name descname"><span class="pre">log</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.log"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.log" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.newline">
-<code class="sig-name descname">newline</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.newline"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.newline" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.newline">
+<code class="sig-name descname"><span class="pre">newline</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.newline"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.newline" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.println">
-<code class="sig-name descname">println</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.println"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.println" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.println">
+<code class="sig-name descname"><span class="pre">println</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.println"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.println" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.show_progress">
-<code class="sig-name descname">show_progress</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">iteration</span></em>, <em class="sig-param"><span class="n">total</span></em>, <em class="sig-param"><span class="n">length</span><span class="o">=</span><span class="default_value">40</span></em>, <em class="sig-param"><span class="n">min_level</span><span class="o">=</span><span class="default_value">0</span></em>, <em class="sig-param"><span class="n">prefix</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">carriage_return</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">suffix</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">symbol</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.show_progress"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.show_progress" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.show_progress">
+<code class="sig-name descname"><span class="pre">show_progress</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">iteration</span></span></em>, <em><span class="n"><span class="pre">total</span></span></em>, <em><span class="n"><span class="pre">length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">40</span></span></em>, <em><span class="n"><span class="pre">min_level</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em><span class="n"><span class="pre">prefix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">carriage_return</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">suffix</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">symbol</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.show_progress"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.show_progress" title="Permalink to this definition"></a></dt>
 <dd><p>create a terminal progress bar, default bar shows for verbose+
 :param iteration: current iteration (Int)
 :param total: total iterations (Int)
@@ -296,54 +210,54 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 </dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.logger.message.SingularityMessage.spinner">
-<code class="sig-name descname">spinner</code><em class="property"> = &lt;spython.logger.spinner.Spinner object&gt;</em><a class="headerlink" href="#spython.logger.message.SingularityMessage.spinner" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.spinner">
+<code class="sig-name descname"><span class="pre">spinner</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">&lt;spython.logger.spinner.Spinner</span> <span class="pre">object&gt;</span></em><a class="headerlink" href="#spython.logger.message.SingularityMessage.spinner" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.table">
-<code class="sig-name descname">table</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">rows</span></em>, <em class="sig-param"><span class="n">col_width</span><span class="o">=</span><span class="default_value">2</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.table"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.table" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.table">
+<code class="sig-name descname"><span class="pre">table</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">rows</span></span></em>, <em><span class="n"><span class="pre">col_width</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.table"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.table" title="Permalink to this definition"></a></dt>
 <dd><p>table will print a table of entries. If the rows is
 a dictionary, the keys are interpreted as column names. if
 not, a numbered list is used.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.useColor">
-<code class="sig-name descname">useColor</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.useColor"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.useColor" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.useColor">
+<code class="sig-name descname"><span class="pre">useColor</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.useColor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.useColor" title="Permalink to this definition"></a></dt>
 <dd><p>useColor will determine if color should be added
 to a print. Will check if being run in a terminal, and
 if has support for ascii</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.verbose">
-<code class="sig-name descname">verbose</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.verbose"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.verbose" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.verbose">
+<code class="sig-name descname"><span class="pre">verbose</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.verbose"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.verbose" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.verbose1">
-<code class="sig-name descname">verbose1</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.verbose1"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.verbose1" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.verbose1">
+<code class="sig-name descname"><span class="pre">verbose1</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.verbose1"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.verbose1" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.verbose2">
-<code class="sig-name descname">verbose2</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.verbose2"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.verbose2" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.verbose2">
+<code class="sig-name descname"><span class="pre">verbose2</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.verbose2"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.verbose2" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.verbose3">
-<code class="sig-name descname">verbose3</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.verbose3"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.verbose3" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.verbose3">
+<code class="sig-name descname"><span class="pre">verbose3</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.verbose3"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.verbose3" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.warning">
-<code class="sig-name descname">warning</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.warning"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.warning" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.warning">
+<code class="sig-name descname"><span class="pre">warning</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.warning"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.warning" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.message.SingularityMessage.write">
-<code class="sig-name descname">write</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">stream</span></em>, <em class="sig-param"><span class="n">message</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.write"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.write" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.SingularityMessage.write">
+<code class="sig-name descname"><span class="pre">write</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">stream</span></span></em>, <em><span class="n"><span class="pre">message</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#SingularityMessage.write"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.SingularityMessage.write" title="Permalink to this definition"></a></dt>
 <dd><p>write will write a message to a stream,
 first checking the encoding</p>
 </dd></dl>
@@ -351,15 +265,15 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.logger.message.convert2boolean">
-<code class="sig-prename descclassname">spython.logger.message.</code><code class="sig-name descname">convert2boolean</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">arg</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#convert2boolean"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.convert2boolean" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.convert2boolean">
+<code class="sig-prename descclassname"><span class="pre">spython.logger.message.</span></code><code class="sig-name descname"><span class="pre">convert2boolean</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">arg</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#convert2boolean"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.convert2boolean" title="Permalink to this definition"></a></dt>
 <dd><p>convert2boolean is used for environmental variables that must be
 returned as boolean</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.logger.message.get_logging_level">
-<code class="sig-prename descclassname">spython.logger.message.</code><code class="sig-name descname">get_logging_level</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#get_logging_level"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.get_logging_level" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.get_logging_level">
+<code class="sig-prename descclassname"><span class="pre">spython.logger.message.</span></code><code class="sig-name descname"><span class="pre">get_logging_level</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#get_logging_level"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.get_logging_level" title="Permalink to this definition"></a></dt>
 <dd><p>configure a logging to standard out based on the user’s
 selected level, which should be in an environment variable called
 MESSAGELEVEL. if MESSAGELEVEL is not set, the info level
@@ -367,154 +281,129 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.logger.message.get_user_color_preference">
-<code class="sig-prename descclassname">spython.logger.message.</code><code class="sig-name descname">get_user_color_preference</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#get_user_color_preference"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.message.get_user_color_preference" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.message.get_user_color_preference">
+<code class="sig-prename descclassname"><span class="pre">spython.logger.message.</span></code><code class="sig-name descname"><span class="pre">get_user_color_preference</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/message.html#get_user_color_preference"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.message.get_user_color_preference" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 </div>
 <div class="section" id="module-spython.logger.progress">
-<span id="spython-logger-progress-module"></span><h2>spython.logger.progress module<a class="headerlink" href="#module-spython.logger.progress" title="Permalink to this headline">¶</a></h2>
+<span id="spython-logger-progress-module"></span><h2>spython.logger.progress module<a class="headerlink" href="#module-spython.logger.progress" title="Permalink to this headline"></a></h2>
 <dl class="py class">
-<dt id="spython.logger.progress.ProgressBar">
-<em class="property">class </em><code class="sig-prename descclassname">spython.logger.progress.</code><code class="sig-name descname">ProgressBar</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">label</span><span class="o">=</span><span class="default_value">''</span></em>, <em class="sig-param"><span class="n">width</span><span class="o">=</span><span class="default_value">32</span></em>, <em class="sig-param"><span class="n">hide</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">empty_char</span><span class="o">=</span><span class="default_value">' '</span></em>, <em class="sig-param"><span class="n">filled_char</span><span class="o">=</span><span class="default_value">'-'</span></em>, <em class="sig-param"><span class="n">expected_size</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">every</span><span class="o">=</span><span class="default_value">1</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#ProgressBar"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.progress.ProgressBar" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dt class="sig sig-object py" id="spython.logger.progress.ProgressBar">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><code class="sig-prename descclassname"><span class="pre">spython.logger.progress.</span></code><code class="sig-name descname"><span class="pre">ProgressBar</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">label</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em><span class="n"><span class="pre">width</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">32</span></span></em>, <em><span class="n"><span class="pre">hide</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">empty_char</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'</span> <span class="pre">'</span></span></em>, <em><span class="n"><span class="pre">filled_char</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'-'</span></span></em>, <em><span class="n"><span class="pre">expected_size</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">every</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#ProgressBar"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.progress.ProgressBar" title="Permalink to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.10)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <dl class="py method">
-<dt id="spython.logger.progress.ProgressBar.done">
-<code class="sig-name descname">done</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#ProgressBar.done"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.progress.ProgressBar.done" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.progress.ProgressBar.done">
+<code class="sig-name descname"><span class="pre">done</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#ProgressBar.done"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.progress.ProgressBar.done" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.progress.ProgressBar.format_time">
-<code class="sig-name descname">format_time</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">seconds</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#ProgressBar.format_time"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.progress.ProgressBar.format_time" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.progress.ProgressBar.format_time">
+<code class="sig-name descname"><span class="pre">format_time</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">seconds</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#ProgressBar.format_time"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.progress.ProgressBar.format_time" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.progress.ProgressBar.show">
-<code class="sig-name descname">show</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">progress</span></em>, <em class="sig-param"><span class="n">count</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#ProgressBar.show"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.progress.ProgressBar.show" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.progress.ProgressBar.show">
+<code class="sig-name descname"><span class="pre">show</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">progress</span></span></em>, <em><span class="n"><span class="pre">count</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#ProgressBar.show"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.progress.ProgressBar.show" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.logger.progress.bar">
-<code class="sig-prename descclassname">spython.logger.progress.</code><code class="sig-name descname">bar</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">it</span></em>, <em class="sig-param"><span class="n">label</span><span class="o">=</span><span class="default_value">''</span></em>, <em class="sig-param"><span class="n">width</span><span class="o">=</span><span class="default_value">32</span></em>, <em class="sig-param"><span class="n">hide</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">empty_char</span><span class="o">=</span><span class="default_value">' '</span></em>, <em class="sig-param"><span class="n">filled_char</span><span class="o">=</span><span class="default_value">'-'</span></em>, <em class="sig-param"><span class="n">expected_size</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">every</span><span class="o">=</span><span class="default_value">1</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#bar"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.progress.bar" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.progress.bar">
+<code class="sig-prename descclassname"><span class="pre">spython.logger.progress.</span></code><code class="sig-name descname"><span class="pre">bar</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">it</span></span></em>, <em><span class="n"><span class="pre">label</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em><span class="n"><span class="pre">width</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">32</span></span></em>, <em><span class="n"><span class="pre">hide</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">empty_char</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'</span> <span class="pre">'</span></span></em>, <em><span class="n"><span class="pre">filled_char</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'-'</span></span></em>, <em><span class="n"><span class="pre">expected_size</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">every</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/progress.html#bar"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.progress.bar" title="Permalink to this definition"></a></dt>
 <dd><p>Progress iterator. Wrap your iterables with it.</p>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.logger.spinner">
-<span id="spython-logger-spinner-module"></span><h2>spython.logger.spinner module<a class="headerlink" href="#module-spython.logger.spinner" title="Permalink to this headline">¶</a></h2>
+<span id="spython-logger-spinner-module"></span><h2>spython.logger.spinner module<a class="headerlink" href="#module-spython.logger.spinner" title="Permalink to this headline"></a></h2>
 <dl class="py class">
-<dt id="spython.logger.spinner.Spinner">
-<em class="property">class </em><code class="sig-prename descclassname">spython.logger.spinner.</code><code class="sig-name descname">Spinner</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">delay</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">generator</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.spinner.Spinner" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><code class="sig-prename descclassname"><span class="pre">spython.logger.spinner.</span></code><code class="sig-name descname"><span class="pre">Spinner</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">delay</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">generator</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.spinner.Spinner" title="Permalink to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.10)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <dl class="py method">
-<dt id="spython.logger.spinner.Spinner.balloons_cursor">
-<em class="property">static </em><code class="sig-name descname">balloons_cursor</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.balloons_cursor"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.balloons_cursor" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner.balloons_cursor">
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><code class="sig-name descname"><span class="pre">balloons_cursor</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.balloons_cursor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.balloons_cursor" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.spinner.Spinner.changing_arrows">
-<em class="property">static </em><code class="sig-name descname">changing_arrows</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.changing_arrows"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.changing_arrows" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner.changing_arrows">
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><code class="sig-name descname"><span class="pre">changing_arrows</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.changing_arrows"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.changing_arrows" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.logger.spinner.Spinner.delay">
-<code class="sig-name descname">delay</code><em class="property"> = 0.1</em><a class="headerlink" href="#spython.logger.spinner.Spinner.delay" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner.delay">
+<code class="sig-name descname"><span class="pre">delay</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">0.1</span></em><a class="headerlink" href="#spython.logger.spinner.Spinner.delay" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.spinner.Spinner.run">
-<code class="sig-name descname">run</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.run"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.run" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner.run">
+<code class="sig-name descname"><span class="pre">run</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.run"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.run" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.spinner.Spinner.select_generator">
-<code class="sig-name descname">select_generator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">generator</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.select_generator"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.select_generator" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner.select_generator">
+<code class="sig-name descname"><span class="pre">select_generator</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">generator</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.select_generator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.select_generator" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.logger.spinner.Spinner.spinning">
-<code class="sig-name descname">spinning</code><em class="property"> = False</em><a class="headerlink" href="#spython.logger.spinner.Spinner.spinning" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner.spinning">
+<code class="sig-name descname"><span class="pre">spinning</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">False</span></em><a class="headerlink" href="#spython.logger.spinner.Spinner.spinning" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.spinner.Spinner.spinning_cursor">
-<em class="property">static </em><code class="sig-name descname">spinning_cursor</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.spinning_cursor"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.spinning_cursor" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner.spinning_cursor">
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><code class="sig-name descname"><span class="pre">spinning_cursor</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.spinning_cursor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.spinning_cursor" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.spinner.Spinner.start">
-<code class="sig-name descname">start</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.start"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.start" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner.start">
+<code class="sig-name descname"><span class="pre">start</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.start"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.start" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.logger.spinner.Spinner.stop">
-<code class="sig-name descname">stop</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.stop"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.stop" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.logger.spinner.Spinner.stop">
+<code class="sig-name descname"><span class="pre">stop</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/logger/spinner.html#Spinner.stop"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.logger.spinner.Spinner.stop" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.logger">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.logger" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.logger" title="Permalink to this headline"></a></h2>
 </div>
 </div>
 
 
            </div>
-           
           </div>
-          <footer>
-  
-    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
-      
-        <a href="spython.main.html" class="btn btn-neutral float-right" title="spython.main package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
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-    <p>
-        
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
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+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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diff --git a/docs/api/source/spython.main.base.html b/docs/api/source/spython.main.base.html
index 3c21a37c..6c5cf816 100644
--- a/docs/api/source/spython.main.base.html
+++ b/docs/api/source/spython.main.base.html
@@ -1,71 +1,36 @@
-
-
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+<html class="writer-html4" lang="en" >
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-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.base package &mdash; Singularity Python API 1 documentation</title>
-  
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-  <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
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+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
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   <![endif]-->
   
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+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
         <script src="../assets/jquery.js"></script>
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+    <script src="../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="spython.main.parse package" href="spython.main.parse.html" />
     <link rel="prev" title="spython.main package" href="spython.main.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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-          
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+            <a href="../index.html" class="icon icon-home"> Singularity Python API
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     <input type="text" name="q" placeholder="Search docs" />
@@ -73,18 +38,7 @@
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 </div>
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
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 <li class="toctree-l1 current"><a class="reference internal" href="spython.html">spython package</a><ul class="current">
 <li class="toctree-l2 current"><a class="reference internal" href="spython.html#subpackages">Subpackages</a><ul class="current">
@@ -116,87 +70,45 @@
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 </ul>
 
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           <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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-        
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-        
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+             
   <div class="section" id="spython-main-base-package">
-<h1>spython.main.base package<a class="headerlink" href="#spython-main-base-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.main.base package<a class="headerlink" href="#spython-main-base-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.main.base.command">
-<span id="spython-main-base-command-module"></span><h2>spython.main.base.command module<a class="headerlink" href="#module-spython.main.base.command" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-base-command-module"></span><h2>spython.main.base.command module<a class="headerlink" href="#module-spython.main.base.command" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.base.command.generate_bind_list">
-<code class="sig-prename descclassname">spython.main.base.command.</code><code class="sig-name descname">generate_bind_list</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">bindlist</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/command.html#generate_bind_list"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.command.generate_bind_list" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="simple">
-<dt>generate bind string will take a single string or list of binds, and</dt><dd><p>return a list that can be added to an exec or run command. For example,
-the following map as follows:</p>
-</dd>
+<dt class="sig sig-object py" id="spython.main.base.command.generate_bind_list">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.command.</span></code><code class="sig-name descname"><span class="pre">generate_bind_list</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">bindlist</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/command.html#generate_bind_list"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.command.generate_bind_list" title="Permalink to this definition"></a></dt>
+<dd><dl class="docutils">
+<dt>generate bind string will take a single string or list of binds, and</dt><dd>return a list that can be added to an exec or run command. For example,
+the following map as follows:</dd>
 </dl>
 <p>[‘/host:/container’, ‘/both’] –&gt; [“–bind”, “/host:/container”,”–bind”,”/both” ]
 [‘/both’]                     –&gt; [“–bind”, “/both”]
@@ -210,84 +122,98 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.base.command.init_command">
-<code class="sig-prename descclassname">spython.main.base.command.</code><code class="sig-name descname">init_command</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">action</span></em>, <em class="sig-param"><span class="n">flags</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/command.html#init_command"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.command.init_command" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.command.init_command">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.command.</span></code><code class="sig-name descname"><span class="pre">init_command</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">action</span></span></em>, <em><span class="n"><span class="pre">flags</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/command.html#init_command"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.command.init_command" title="Permalink to this definition"></a></dt>
 <dd><p>return the initial Singularity command with any added flags.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>action</strong> (<em>the main action to perform (e.g., build)</em>)</p></li>
-<li><p><strong>flags</strong> (<em>one or more additional singularity options</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>action</strong> (<em>the main action to perform (e.g., build)</em>)</li>
+<li><strong>flags</strong> (<em>one or more additional singularity options</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.base.command.run_command">
-<code class="sig-prename descclassname">spython.main.base.command.</code><code class="sig-name descname">run_command</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">cmd</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">capture</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">return_result</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">environ</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/command.html#run_command"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.command.run_command" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.command.run_command">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.command.</span></code><code class="sig-name descname"><span class="pre">run_command</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">cmd</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">capture</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">return_result</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">environ</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/command.html#run_command"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.command.run_command" title="Permalink to this definition"></a></dt>
 <dd><p>run_command is a wrapper for the global run_command, checking first
 for sudo and exiting on error if needed. The message is returned as
 a list of lines for the calling function to parse, and stdout uses
 the parent process so it appears for the user.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>cmd</strong> (<em>the command to run</em>)</p></li>
-<li><p><strong>sudo</strong> (<em>does the command require sudo?</em>)</p></li>
-<li><p><strong>quiet</strong> (<em>if quiet set by function, overrides client setting.</em>)</p></li>
-<li><p><strong>return_result</strong> (<em>return the result, if not successful (default False).</em>)</p></li>
-<li><p><strong>sudo_options</strong> (<em>string or list of strings that will be passed as options to sudo</em>)</p></li>
-<li><p><strong>On success, returns result.</strong></p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>cmd</strong> (<em>the command to run</em>)</li>
+<li><strong>sudo</strong> (<em>does the command require sudo?</em>)</li>
+<li><strong>quiet</strong> (<em>if quiet set by function, overrides client setting.</em>)</li>
+<li><strong>return_result</strong> (<em>return the result, if not successful (default False).</em>)</li>
+<li><strong>sudo_options</strong> (<em>string or list of strings that will be passed as options to sudo</em>)</li>
+<li><strong>On success, returns result.</strong></li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.base.command.send_command">
-<code class="sig-prename descclassname">spython.main.base.command.</code><code class="sig-name descname">send_command</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">cmd</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">stderr</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">stdout</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/command.html#send_command"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.command.send_command" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.command.send_command">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.command.</span></code><code class="sig-name descname"><span class="pre">send_command</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">cmd</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">stderr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">stdout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/command.html#send_command"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.command.send_command" title="Permalink to this definition"></a></dt>
 <dd><p>send command is a non interactive version of run_command, meaning
 that we execute the command and return the return value, but don’t
 attempt to stream any content (text from the screen) back to the
 user. This is useful for commands interacting with OCI bundles.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>cmd</strong> (<em>the list of commands to send to the terminal</em>)</p></li>
-<li><p><strong>sudo</strong> (<em>use sudo (or not)</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>cmd</strong> (<em>the list of commands to send to the terminal</em>)</li>
+<li><strong>sudo</strong> (<em>use sudo (or not)</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.base.flags">
-<span id="spython-main-base-flags-module"></span><h2>spython.main.base.flags module<a class="headerlink" href="#module-spython.main.base.flags" title="Permalink to this headline">¶</a></h2>
-<dl>
+<span id="spython-main-base-flags-module"></span><h2>spython.main.base.flags module<a class="headerlink" href="#module-spython.main.base.flags" title="Permalink to this headline"></a></h2>
+<dl class="docutils">
 <dt>GLOBAL OPTIONS:</dt><dd><p>-d|–debug    Print debugging information
 -h|–help     Display usage summary
 -s|–silent   Only print errors
 -q|–quiet    Suppress all normal output</p>
 <blockquote>
-<div><dl class="option-list">
-<dt><kbd><span class="option">--version</span></kbd></dt>
-<dd><p>Show application version</p>
-</dd>
-</dl>
+<div><table class="docutils option-list" frame="void" rules="none">
+<col class="option" />
+<col class="description" />
+<tbody valign="top">
+<tr><td class="option-group">
+<kbd><span class="option">--version</span></kbd></td>
+<td>Show application version</td></tr>
+</tbody>
+</table>
 </div></blockquote>
 <p>-v|–verbose  Increase verbosity +1
 -x|–sh-debug Print shell wrapper debugging information</p>
 </dd>
-<dt>GENERAL COMMANDS:</dt><dd><p>help       Show additional help for a command or container
-selftest   Run some self tests for singularity install</p>
-</dd>
-<dt>CONTAINER USAGE COMMANDS:</dt><dd><p>exec       Execute a command within container
+<dt>GENERAL COMMANDS:</dt><dd>help       Show additional help for a command or container
+selftest   Run some self tests for singularity install</dd>
+<dt>CONTAINER USAGE COMMANDS:</dt><dd>exec       Execute a command within container
 run        Launch a runscript within container
 shell      Run a Bourne shell within container
-test       Launch a testscript within container</p>
-</dd>
-<dt>CONTAINER MANAGEMENT COMMANDS:</dt><dd><p>apps       List available apps within a container
+test       Launch a testscript within container</dd>
+<dt>CONTAINER MANAGEMENT COMMANDS:</dt><dd>apps       List available apps within a container
 bootstrap  <em>Deprecated</em> use build instead
 build      Build a new Singularity container
 check      Perform container lint checks
@@ -296,426 +222,495 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 pull       Pull a Singularity/Docker container to $PWD
 siflist    list data object descriptors of a SIF container image
 sign       Sign a group of data objects in container
-verify     Verify the crypto signature of group of data objects in container</p>
-</dd>
-<dt>COMMAND GROUPS:</dt><dd><p>capability User’s capabilities management command group
+verify     Verify the crypto signature of group of data objects in container</dd>
+<dt>COMMAND GROUPS:</dt><dd>capability User’s capabilities management command group
 image      Container image command group
-instance   Persistent instance command group</p>
-</dd>
+instance   Persistent instance command group</dd>
 </dl>
 <dl class="py function">
-<dt id="spython.main.base.flags.parse_verbosity">
-<code class="sig-prename descclassname">spython.main.base.flags.</code><code class="sig-name descname">parse_verbosity</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">args</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/flags.html#parse_verbosity"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.flags.parse_verbosity" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.flags.parse_verbosity">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.flags.</span></code><code class="sig-name descname"><span class="pre">parse_verbosity</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">args</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/flags.html#parse_verbosity"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.flags.parse_verbosity" title="Permalink to this definition"></a></dt>
 <dd><p>parse_verbosity will take an argument object, and return the args
 passed (from a dictionary) to a list</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>args</strong> (<em>the argparse argument objects</em>)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>args</strong> (<em>the argparse argument objects</em>)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.base.generate">
-<span id="spython-main-base-generate-module"></span><h2>spython.main.base.generate module<a class="headerlink" href="#module-spython.main.base.generate" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-base-generate-module"></span><h2>spython.main.base.generate module<a class="headerlink" href="#module-spython.main.base.generate" title="Permalink to this headline"></a></h2>
 <dl class="py class">
-<dt id="spython.main.base.generate.RobotNamer">
-<em class="property">class </em><code class="sig-prename descclassname">spython.main.base.generate.</code><code class="sig-name descname">RobotNamer</code><a class="reference internal" href="../modules/spython/main/base/generate.html#RobotNamer"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.generate.RobotNamer" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dt class="sig sig-object py" id="spython.main.base.generate.RobotNamer">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><code class="sig-prename descclassname"><span class="pre">spython.main.base.generate.</span></code><code class="sig-name descname"><span class="pre">RobotNamer</span></code><a class="reference internal" href="../modules/spython/main/base/generate.html#RobotNamer"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.generate.RobotNamer" title="Permalink to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.10)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <dl class="py method">
-<dt id="spython.main.base.generate.RobotNamer.generate">
-<code class="sig-name descname">generate</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">delim</span><span class="o">=</span><span class="default_value">'-'</span></em>, <em class="sig-param"><span class="n">length</span><span class="o">=</span><span class="default_value">4</span></em>, <em class="sig-param"><span class="n">chars</span><span class="o">=</span><span class="default_value">'0123456789'</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/generate.html#RobotNamer.generate"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.generate.RobotNamer.generate" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="simple">
-<dt>Generate a robot name. Inspiration from Haikunator, but much more</dt><dd><p>poorly implemented ;)</p>
-</dd>
+<dt class="sig sig-object py" id="spython.main.base.generate.RobotNamer.generate">
+<code class="sig-name descname"><span class="pre">generate</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">delim</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'-'</span></span></em>, <em><span class="n"><span class="pre">length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">4</span></span></em>, <em><span class="n"><span class="pre">chars</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'0123456789'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/generate.html#RobotNamer.generate"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.generate.RobotNamer.generate" title="Permalink to this definition"></a></dt>
+<dd><dl class="docutils">
+<dt>Generate a robot name. Inspiration from Haikunator, but much more</dt><dd>poorly implemented ;)</dd>
 </dl>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>delim</strong> (<em>Delimiter</em>)</p></li>
-<li><p><strong>length</strong> (<em>TokenLength</em>)</p></li>
-<li><p><strong>chars</strong> (<em>TokenChars</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>delim</strong> (<em>Delimiter</em>)</li>
+<li><strong>length</strong> (<em>TokenLength</em>)</li>
+<li><strong>chars</strong> (<em>TokenChars</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.base.generate.main">
-<code class="sig-prename descclassname">spython.main.base.generate.</code><code class="sig-name descname">main</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/generate.html#main"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.generate.main" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.generate.main">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.generate.</span></code><code class="sig-name descname"><span class="pre">main</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/generate.html#main"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.generate.main" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.base.logger">
-<span id="spython-main-base-logger-module"></span><h2>spython.main.base.logger module<a class="headerlink" href="#module-spython.main.base.logger" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-base-logger-module"></span><h2>spython.main.base.logger module<a class="headerlink" href="#module-spython.main.base.logger" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.base.logger.init_level">
-<code class="sig-prename descclassname">spython.main.base.logger.</code><code class="sig-name descname">init_level</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/logger.html#init_level"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.logger.init_level" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.logger.init_level">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.logger.</span></code><code class="sig-name descname"><span class="pre">init_level</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/logger.html#init_level"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.logger.init_level" title="Permalink to this definition"></a></dt>
 <dd><p>set the logging level based on the environment</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>quiet</strong> (<em>boolean if True, set to quiet. Gets overriden by environment</em>) – setting, and only exists to define default</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>quiet</strong> (<em>boolean if True, set to quiet. Gets overridden by environment</em>) – setting, and only exists to define default</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.base.logger.println">
-<code class="sig-prename descclassname">spython.main.base.logger.</code><code class="sig-name descname">println</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">output</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/logger.html#println"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.logger.println" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.logger.println">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.logger.</span></code><code class="sig-name descname"><span class="pre">println</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">output</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/logger.html#println"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.logger.println" title="Permalink to this definition"></a></dt>
 <dd><p>print will print the output, given that quiet is not True. This
 function also serves to convert output in bytes to utf-8</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>output</strong> (<em>the string to print</em>)</p></li>
-<li><p><strong>quiet</strong> (<em>a runtime variable to over-ride the default.</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>output</strong> (<em>the string to print</em>)</li>
+<li><strong>quiet</strong> (<em>a runtime variable to over-ride the default.</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.base.sutils">
-<span id="spython-main-base-sutils-module"></span><h2>spython.main.base.sutils module<a class="headerlink" href="#module-spython.main.base.sutils" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-base-sutils-module"></span><h2>spython.main.base.sutils module<a class="headerlink" href="#module-spython.main.base.sutils" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.base.sutils.get_filename">
-<code class="sig-prename descclassname">spython.main.base.sutils.</code><code class="sig-name descname">get_filename</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image</span></em>, <em class="sig-param"><span class="n">ext</span><span class="o">=</span><span class="default_value">'sif'</span></em>, <em class="sig-param"><span class="n">pwd</span><span class="o">=</span><span class="default_value">True</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/sutils.html#get_filename"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.sutils.get_filename" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.sutils.get_filename">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.sutils.</span></code><code class="sig-name descname"><span class="pre">get_filename</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">image</span></span></em>, <em><span class="n"><span class="pre">ext</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sif'</span></span></em>, <em><span class="n"><span class="pre">pwd</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/sutils.html#get_filename"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.sutils.get_filename" title="Permalink to this definition"></a></dt>
 <dd><p>return an image filename based on the image uri.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>ext</strong> (<em>the extension to use</em>)</p></li>
-<li><p><strong>pwd</strong> (<em>derive a filename for the pwd</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>ext</strong> (<em>the extension to use</em>)</li>
+<li><strong>pwd</strong> (<em>derive a filename for the pwd</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.base.sutils.get_uri">
-<code class="sig-prename descclassname">spython.main.base.sutils.</code><code class="sig-name descname">get_uri</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/sutils.html#get_uri"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.sutils.get_uri" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.sutils.get_uri">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.sutils.</span></code><code class="sig-name descname"><span class="pre">get_uri</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/sutils.html#get_uri"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.sutils.get_uri" title="Permalink to this definition"></a></dt>
 <dd><p>check if the loaded image object (self.simage) has an associated uri
 return if yes, None if not.</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.base.sutils.load">
-<code class="sig-prename descclassname">spython.main.base.sutils.</code><code class="sig-name descname">load</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/sutils.html#load"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.sutils.load" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.sutils.load">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.sutils.</span></code><code class="sig-name descname"><span class="pre">load</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/sutils.html#load"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.sutils.load" title="Permalink to this definition"></a></dt>
 <dd><p>load an image, either an actual path on the filesystem or a uri.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>image</strong> (<em>the image path or uri to load (e.g., docker://ubuntu</em>)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>image</strong> (<em>the image path or uri to load (e.g., docker://ubuntu</em>)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.base.sutils.setenv">
-<code class="sig-prename descclassname">spython.main.base.sutils.</code><code class="sig-name descname">setenv</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">variable</span></em>, <em class="sig-param"><span class="n">value</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/sutils.html#setenv"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.sutils.setenv" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.sutils.setenv">
+<code class="sig-prename descclassname"><span class="pre">spython.main.base.sutils.</span></code><code class="sig-name descname"><span class="pre">setenv</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">variable</span></span></em>, <em><span class="n"><span class="pre">value</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base/sutils.html#setenv"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.sutils.setenv" title="Permalink to this definition"></a></dt>
 <dd><p>set an environment variable for Singularity</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>variable</strong> (<em>the variable to set</em>)</p></li>
-<li><p><strong>value</strong> (<em>the value to set</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>variable</strong> (<em>the variable to set</em>)</li>
+<li><strong>value</strong> (<em>the value to set</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.base">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.main.base" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.main.base" title="Permalink to this headline"></a></h2>
 <dl class="py class">
-<dt id="spython.main.base.Client">
-<em class="property">class </em><code class="sig-prename descclassname">spython.main.base.</code><code class="sig-name descname">Client</code><a class="reference internal" href="../modules/spython/main/base.html#Client"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.Client" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dt class="sig sig-object py" id="spython.main.base.Client">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><code class="sig-prename descclassname"><span class="pre">spython.main.base.</span></code><code class="sig-name descname"><span class="pre">Client</span></code><a class="reference internal" href="../modules/spython/main/base.html#Client"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.Client" title="Permalink to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.10)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <dl class="py attribute">
-<dt id="spython.main.base.Client.RobotNamer">
-<code class="sig-name descname">RobotNamer</code><em class="property"> = &lt;spython.main.base.generate.RobotNamer object&gt;</em><a class="headerlink" href="#spython.main.base.Client.RobotNamer" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.RobotNamer">
+<code class="sig-name descname"><span class="pre">RobotNamer</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">&lt;spython.main.base.generate.RobotNamer</span> <span class="pre">object&gt;</span></em><a class="headerlink" href="#spython.main.base.Client.RobotNamer" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.apps">
-<code class="sig-name descname">apps</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">full_path</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">root</span><span class="o">=</span><span class="default_value">''</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.apps" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.apps">
+<code class="sig-name descname"><span class="pre">apps</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">full_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.apps" title="Permalink to this definition"></a></dt>
 <dd><p>return list of SCIF apps in image. The Singularity software serves
 a scientific filesystem integration that will install apps to
 /scif/apps and associated data to /scif/data. For more information
 about SCIF, see <a class="reference external" href="https://sci-f.github.io">https://sci-f.github.io</a>. Note that this seems
 to be deprecated in Singularity 3.x.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>full_path</strong> (<em>if True, return relative to scif base folder</em>)</p></li>
-<li><p><strong>image_path</strong> (<em>full path to the image</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>full_path</strong> (<em>if True, return relative to scif base folder</em>)</li>
+<li><strong>image_path</strong> (<em>full path to the image</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.build">
-<code class="sig-name descname">build</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">recipe</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">isolated</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sandbox</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">writable</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">build_folder</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">robot_name</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">ext</span><span class="o">=</span><span class="default_value">'sif'</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">stream</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">force</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">return_result</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.build" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.build">
+<code class="sig-name descname"><span class="pre">build</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">recipe</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">isolated</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sandbox</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">writable</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">build_folder</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">robot_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">ext</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sif'</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">stream</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">force</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">return_result</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.build" title="Permalink to this definition"></a></dt>
 <dd><p>build a singularity image, optionally for an isolated build
 (requires sudo). If you specify to stream, expect the image name
 and an iterator to be returned.</p>
 <p>image, builder = Client.build(…)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>recipe</strong> (<em>the path to the recipe file (or source to build from). If not</em>) – defined, we look for “Singularity” file in $PWD</p></li>
-<li><p><strong>image</strong> (<em>the image to build (if None, will use arbitary name</em>)</p></li>
-<li><p><strong>isolated</strong> (<em>if True, run build with –isolated flag</em>)</p></li>
-<li><p><strong>sandbox</strong> (<em>if True, create a writable sandbox</em>)</p></li>
-<li><p><strong>writable</strong> (<em>if True, use writable ext3 (sandbox takes preference)</em>)</p></li>
-<li><p><strong>build_folder</strong> (<em>where the container should be built.</em>)</p></li>
-<li><p><strong>ext</strong> (<em>the image extension to use.</em>)</p></li>
-<li><p><strong>robot_name</strong> (<em>boolean, default False. if you don’t give your image a</em>) – name (with “image”) then a fun robot name will be generated
-instead. Highly recommended :)</p></li>
-<li><p><strong>sudo</strong> (<em>give sudo to the command (or not) default is True for build</em>)</p></li>
-<li><p><strong>sudo_options</strong> (<em>options to pass to sudo (e.g. –preserve-env=SINGULARITY_CACHEDIR,SINGULARITY_TMPDIR)</em>)</p></li>
-<li><p><strong>options</strong> (<em>for all other options, specify them in this list.</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>quiet</strong> (<em>quiet verbose printing from the client.</em>)</p></li>
-<li><p><strong>return_result</strong> (<em>if True, return complete error code / message dictionary</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>recipe</strong> (<em>the path to the recipe file (or source to build from). If not</em>) – defined, we look for “Singularity” file in $PWD</li>
+<li><strong>image</strong> (<em>the image to build (if None, will use arbitrary name</em>)</li>
+<li><strong>isolated</strong> (<em>if True, run build with –isolated flag</em>)</li>
+<li><strong>sandbox</strong> (<em>if True, create a writable sandbox</em>)</li>
+<li><strong>writable</strong> (<em>if True, use writable ext3 (sandbox takes preference)</em>)</li>
+<li><strong>build_folder</strong> (<em>where the container should be built.</em>)</li>
+<li><strong>ext</strong> (<em>the image extension to use.</em>)</li>
+<li><strong>robot_name</strong> (<em>boolean, default False. if you don’t give your image a</em>) – name (with “image”) then a fun robot name will be generated
+instead. Highly recommended :)</li>
+<li><strong>sudo</strong> (<em>give sudo to the command (or not) default is True for build</em>)</li>
+<li><strong>sudo_options</strong> (<em>options to pass to sudo (e.g. –preserve-env=SINGULARITY_CACHEDIR,SINGULARITY_TMPDIR)</em>)</li>
+<li><strong>options</strong> (<em>for all other options, specify them in this list.</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>quiet</strong> (<em>quiet verbose printing from the client.</em>)</li>
+<li><strong>return_result</strong> (<em>if True, return complete error code / message dictionary</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.main.base.Client.debug">
-<code class="sig-name descname">debug</code><em class="property"> = False</em><a class="headerlink" href="#spython.main.base.Client.debug" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.debug">
+<code class="sig-name descname"><span class="pre">debug</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">False</span></em><a class="headerlink" href="#spython.main.base.Client.debug" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.execute">
-<code class="sig-name descname">execute</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">command</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">app</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">writable</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">contain</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">bind</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">stream</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">nv</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">return_result</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">environ</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.execute" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.execute">
+<code class="sig-name descname"><span class="pre">execute</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">command</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">app</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">writable</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">contain</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">bind</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">stream</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">nv</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">return_result</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">environ</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.execute" title="Permalink to this definition"></a></dt>
 <dd><p>execute: send a command to a container</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>full path to singularity image</em>)</p></li>
-<li><p><strong>command</strong> (<em>command to send to container</em>)</p></li>
-<li><p><strong>app</strong> (<em>if not None, execute a command in context of an app</em>)</p></li>
-<li><p><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</p></li>
-<li><p><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</p></li>
-<li><p><strong>options</strong> (<em>an optional list of options to provide to execute.</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
-directories within your container using bind mounts</p></li>
-<li><p><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</p></li>
-<li><p><strong>return_result</strong> (<em>if True, return entire json object with return code</em>) – and message result not (default)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>full path to singularity image</em>)</li>
+<li><strong>command</strong> (<em>command to send to container</em>)</li>
+<li><strong>app</strong> (<em>if not None, execute a command in context of an app</em>)</li>
+<li><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</li>
+<li><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</li>
+<li><strong>options</strong> (<em>an optional list of options to provide to execute.</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
+directories within your container using bind mounts</li>
+<li><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</li>
+<li><strong>return_result</strong> (<em>if True, return entire json object with return code</em>) – and message result not (default)</li>
+<li><strong>quiet</strong> (<em>Do not print verbose output.</em>)</li>
+<li><strong>environ</strong> (<em>extra environment to add.</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.export">
-<code class="sig-name descname">export</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image_path</span></em>, <em class="sig-param"><span class="n">pipe</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">output_file</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">command</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.export" title="Permalink to this definition">¶</a></dt>
-<dd><p>export will export an image, sudo must be used. If we have Singularity
+<dt class="sig sig-object py" id="spython.main.base.Client.export">
+<code class="sig-name descname"><span class="pre">export</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image_path</span></span></em>, <em><span class="n"><span class="pre">pipe</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">output_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">command</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.export" title="Permalink to this definition"></a></dt>
+<dd><p>export will export an image, sudo must be used. Since we have Singularity
 versions after 3, export is replaced with building into a sandbox.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image_path</strong> (<em>full path to image</em>)</p></li>
-<li><p><strong>pipe</strong> (<em>export to pipe and not file (default, False)</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>output_file</strong> (<em>if pipe=False, export tar to this file. If not specified,</em>)</p></li>
-<li><p><strong>will generate temporary directory.</strong></p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image_path</strong> (<em>full path to image</em>)</li>
+<li><strong>pipe</strong> (<em>export to pipe and not file (default, False)</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>output_file</strong> (<em>if pipe=False, export tar to this file. If not specified,</em>)</li>
+<li><strong>will generate temporary directory.</strong></li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.help">
-<code class="sig-name descname">help</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">command</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.help" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.help">
+<code class="sig-name descname"><span class="pre">help</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">command</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.help" title="Permalink to this definition"></a></dt>
 <dd><p>help prints the general function help, or help for a specific command</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>command</strong> (<em>the command to get help for, if none, prints general help</em>)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>command</strong> (<em>the command to get help for, if none, prints general help</em>)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
-<dl class="py attribute">
-<dt id="spython.main.base.Client.image">
-<code class="sig-name descname">image</code><em class="property"> = &lt;spython.image.cmd.generate_image_commands.&lt;locals&gt;.ImageClient object&gt;</em><a class="headerlink" href="#spython.main.base.Client.image" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
 <dl class="py method">
-<dt id="spython.main.base.Client.inspect">
-<code class="sig-name descname">inspect</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">json</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">app</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.inspect" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.inspect">
+<code class="sig-name descname"><span class="pre">inspect</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">json</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">app</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.inspect" title="Permalink to this definition"></a></dt>
 <dd><p>inspect will show labels, defile, runscript, and tests for an image</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>path of image to inspect</em>)</p></li>
-<li><p><strong>json</strong> (<em>print json instead of raw text (default True)</em>)</p></li>
-<li><p><strong>quiet</strong> (<em>Don’t print result to the screen (default True)</em>)</p></li>
-<li><p><strong>app</strong> (<em>if defined, return help in context of an app</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>path of image to inspect</em>)</li>
+<li><strong>json</strong> (<em>print json instead of raw text (default True)</em>)</li>
+<li><strong>quiet</strong> (<em>Don’t print result to the screen (default True)</em>)</li>
+<li><strong>app</strong> (<em>if defined, return help in context of an app</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.main.base.Client.instance">
-<code class="sig-name descname">instance</code><a class="headerlink" href="#spython.main.base.Client.instance" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.instance">
+<code class="sig-name descname"><span class="pre">instance</span></code><a class="headerlink" href="#spython.main.base.Client.instance" title="Permalink to this definition"></a></dt>
 <dd><p>alias of <a class="reference internal" href="spython.instance.html#spython.instance.Instance" title="spython.instance.Instance"><code class="xref py py-class docutils literal notranslate"><span class="pre">spython.instance.Instance</span></code></a></p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.instance_stopall">
-<code class="sig-name descname">instance_stopall</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.instance_stopall" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.instance_stopall">
+<code class="sig-name descname"><span class="pre">instance_stopall</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.instance_stopall" title="Permalink to this definition"></a></dt>
 <dd><p>stop ALL instances. This command is only added to the command group
 as it doesn’t make sense to call from a single instance</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>sudo</strong> (<em>if the command should be done with sudo (exposes different set of</em>) – instances)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>sudo</strong> (<em>if the command should be done with sudo (exposes different set of</em>) – instances)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.instances">
-<code class="sig-name descname">instances</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">return_json</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.instances" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.instances">
+<code class="sig-name descname"><span class="pre">instances</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">return_json</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.instances" title="Permalink to this definition"></a></dt>
 <dd><p>list instances. For Singularity, this is provided as a command sub
 group.</p>
 <p>singularity instance list</p>
 <p>Return codes provided are different from standard linux:
 see <a class="reference external" href="https://github.com/singularityware/singularity/issues/1706">https://github.com/singularityware/singularity/issues/1706</a>
 Since we expect json output, we don’t support older versions of Singularity.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>return_json</strong> (<em>return a json list of instances instead of objects (False)</em>)</p></li>
-<li><p><strong>name</strong> (<em>if defined, return the list for just one instance (used to ged pid)</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>Return Code  –   Reason</strong></p></li>
-<li><p><strong>0 – Instances Found</strong></p></li>
-<li><p><strong>1 – No Instances, libexecdir value not found, functions file not found</strong></p></li>
-<li><p><strong>255 – Couldn’t get UID</strong></p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>return_json</strong> (<em>return a json list of instances instead of objects (False)</em>)</li>
+<li><strong>name</strong> (<em>if defined, return the list for just one instance (used to ged pid)</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>Return Code  –   Reason</strong></li>
+<li><strong>0 – Instances Found</strong></li>
+<li><strong>1 – No Instances, libexecdir value not found, functions file not found</strong></li>
+<li><strong>255 – Couldn’t get UID</strong></li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.load">
-<code class="sig-name descname">load</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.load" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.load">
+<code class="sig-name descname"><span class="pre">load</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.load" title="Permalink to this definition"></a></dt>
 <dd><p>load an image, either an actual path on the filesystem or a uri.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>image</strong> (<em>the image path or uri to load (e.g., docker://ubuntu</em>)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>image</strong> (<em>the image path or uri to load (e.g., docker://ubuntu</em>)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.main.base.Client.oci">
-<code class="sig-name descname">oci</code><em class="property"> = [singularity-python-oci]</em><a class="headerlink" href="#spython.main.base.Client.oci" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.oci">
+<code class="sig-name descname"><span class="pre">oci</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">[singularity-python-oci]</span></em><a class="headerlink" href="#spython.main.base.Client.oci" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.pull">
-<code class="sig-name descname">pull</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">pull_folder</span><span class="o">=</span><span class="default_value">''</span></em>, <em class="sig-param"><span class="n">ext</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">force</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">capture</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">stream</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.pull" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.pull">
+<code class="sig-name descname"><span class="pre">pull</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">pull_folder</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em><span class="n"><span class="pre">ext</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sif'</span></span></em>, <em><span class="n"><span class="pre">force</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">capture</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">stream</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.pull" title="Permalink to this definition"></a></dt>
 <dd><p>pull will pull a singularity hub or Docker image</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>the complete image uri. If not provided, the client loaded is used</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>pull_folder</strong> (<em>if not defined, pulls to $PWD (‘’). If defined, pulls to</em>) – user specified location instead.</p></li>
-<li><p><strong>Docker and Singularity Hub Naming</strong></p></li>
-<li><p><strong>———————————</strong></p></li>
-<li><p><strong>name</strong> (<em>a custom name to use, to override default</em>)</p></li>
-<li><p><strong>ext</strong> (<em>if no name specified, the default extension to use.</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>the complete image uri. If not provided, the client loaded is used</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>pull_folder</strong> (<em>if not defined, pulls to $PWD (”). If defined, pulls to</em>) – user specified location instead.</li>
+<li><strong>Docker and Singularity Hub Naming</strong></li>
+<li><strong>———————————</strong></li>
+<li><strong>name</strong> (<em>a custom name to use, to override default</em>)</li>
+<li><strong>ext</strong> (<em>if no name specified, the default extension to use.</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py attribute">
-<dt id="spython.main.base.Client.quiet">
-<code class="sig-name descname">quiet</code><em class="property"> = False</em><a class="headerlink" href="#spython.main.base.Client.quiet" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.quiet">
+<code class="sig-name descname"><span class="pre">quiet</span></code><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">False</span></em><a class="headerlink" href="#spython.main.base.Client.quiet" title="Permalink to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.run">
-<code class="sig-name descname">run</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">args</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">app</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">writable</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">contain</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">bind</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">stream</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">nv</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">return_result</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.run" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.run">
+<code class="sig-name descname"><span class="pre">run</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">args</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">app</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">writable</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">contain</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">bind</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">stream</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">nv</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">return_result</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.run" title="Permalink to this definition"></a></dt>
 <dd><p>run will run the container, with or withour arguments (which
 should be provided in a list)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>full path to singularity image</em>)</p></li>
-<li><p><strong>args</strong> (<em>args to include with the run</em>)</p></li>
-<li><p><strong>app</strong> (<em>if not None, execute a command in context of an app</em>)</p></li>
-<li><p><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</p></li>
-<li><p><strong>options</strong> (<em>an optional list of options to provide to run.</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</p></li>
-<li><p><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
-directories within your container using bind mounts</p></li>
-<li><p><strong>stream</strong> (<em>if True, return &lt;generator&gt; for the user to run</em>)</p></li>
-<li><p><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</p></li>
-<li><p><strong>return_result</strong> (<em>if True, return entire json object with return code</em>) – and message result (default is False)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>full path to singularity image</em>)</li>
+<li><strong>args</strong> (<em>args to include with the run</em>)</li>
+<li><strong>app</strong> (<em>if not None, execute a command in context of an app</em>)</li>
+<li><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</li>
+<li><strong>options</strong> (<em>an optional list of options to provide to run.</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</li>
+<li><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
+directories within your container using bind mounts</li>
+<li><strong>stream</strong> (<em>if True, return &lt;generator&gt; for the user to run</em>)</li>
+<li><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</li>
+<li><strong>return_result</strong> (<em>if True, return entire json object with return code</em>) – and message result (default is False)</li>
+<li><strong>quiet</strong> (<em>print the command to the user</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.setenv">
-<code class="sig-name descname">setenv</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">variable</span></em>, <em class="sig-param"><span class="n">value</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.setenv" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.setenv">
+<code class="sig-name descname"><span class="pre">setenv</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">variable</span></span></em>, <em><span class="n"><span class="pre">value</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.setenv" title="Permalink to this definition"></a></dt>
 <dd><p>set an environment variable for Singularity</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>variable</strong> (<em>the variable to set</em>)</p></li>
-<li><p><strong>value</strong> (<em>the value to set</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>variable</strong> (<em>the variable to set</em>)</li>
+<li><strong>value</strong> (<em>the value to set</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.shell">
-<code class="sig-name descname">shell</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">image</span></em>, <em class="sig-param"><span class="n">app</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">writable</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">contain</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">bind</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">nv</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.shell" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.shell">
+<code class="sig-name descname"><span class="pre">shell</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">image</span></span></em>, <em><span class="n"><span class="pre">app</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">writable</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">contain</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">bind</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">nv</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#spython.main.base.Client.shell" title="Permalink to this definition"></a></dt>
 <dd><p>shell into a container. A user is advised to use singularity to do
 this directly, however this function is useful for supporting tools.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>full path to singularity image</em>)</p></li>
-<li><p><strong>app</strong> (<em>if not None, execute a shell in context of an app</em>)</p></li>
-<li><p><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</p></li>
-<li><p><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</p></li>
-<li><p><strong>options</strong> (<em>an optional list of options to provide to shell.</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
-directories within your container using bind mounts</p></li>
-<li><p><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>full path to singularity image</em>)</li>
+<li><strong>app</strong> (<em>if not None, execute a shell in context of an app</em>)</li>
+<li><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</li>
+<li><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</li>
+<li><strong>options</strong> (<em>an optional list of options to provide to shell.</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
+directories within your container using bind mounts</li>
+<li><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.version">
-<code class="sig-name descname">version</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base.html#Client.version"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.Client.version" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.version">
+<code class="sig-name descname"><span class="pre">version</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base.html#Client.version"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.Client.version" title="Permalink to this definition"></a></dt>
 <dd><p>Shortcut to get_singularity_version, takes no arguments.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="spython.main.base.Client.version_info">
-<code class="sig-name descname">version_info</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base.html#Client.version_info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.base.Client.version_info" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.base.Client.version_info">
+<code class="sig-name descname"><span class="pre">version_info</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/base.html#Client.version_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.base.Client.version_info" title="Permalink to this definition"></a></dt>
 <dd><p>Shortcut to get_singularity_version_info, takes no arguments.</p>
 </dd></dl>
 
@@ -726,58 +721,33 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 
            </div>
-           
           </div>
-          <footer>
-  
-    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
-      
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+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+        <a href="spython.main.parse.html" class="btn btn-neutral float-right" title="spython.main.parse package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
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-  
 
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   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
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-  
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+  <script>
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           SphinxRtdTheme.Navigation.enable(true);
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+  </script> 
 
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diff --git a/docs/api/source/spython.main.html b/docs/api/source/spython.main.html
index 609b08cf..b9b1a655 100644
--- a/docs/api/source/spython.main.html
+++ b/docs/api/source/spython.main.html
@@ -1,71 +1,36 @@
-
-
 <!DOCTYPE html>
-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main package &mdash; Singularity Python API 1 documentation</title>
-  
-
-  
-  <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
-
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-  
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-  
-
-  
+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../assets/js/html5shiv.min.js"></script>
   <![endif]-->
   
-    
-      <script type="text/javascript" id="documentation_options" data-url_root="../" src="../assets/documentation_options.js"></script>
+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
         <script src="../assets/jquery.js"></script>
         <script src="../assets/underscore.js"></script>
         <script src="../assets/doctools.js"></script>
-    
-    <script type="text/javascript" src="../assets/js/theme.js"></script>
-
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+    <script src="../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="spython.main.base package" href="spython.main.base.html" />
     <link rel="prev" title="spython.logger package" href="spython.logger.html" /> 
 </head>
 
-<body class="wy-body-for-nav">
-
-   
+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
-
-          
+            <a href="../index.html" class="icon icon-home"> Singularity Python API
           </a>
-
-          
-            
-            
               <div class="version">
                 0.0
               </div>
-            
-          
-
-          
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -73,18 +38,7 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
-
-          
-        </div>
-
-        
-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
-          
-            
-            
-              
-            
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="spython.html">spython package</a><ul class="current">
 <li class="toctree-l2 current"><a class="reference internal" href="spython.html#subpackages">Subpackages</a><ul class="current">
@@ -116,75 +70,35 @@
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 </ul>
 
-            
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       </div>
     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
-
-      
-      <nav class="wy-nav-top" aria-label="top navigation">
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
           <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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-
-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-    
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-        
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-        
       <li>spython.main package</li>
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           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
-            
+             
   <div class="section" id="spython-main-package">
-<h1>spython.main package<a class="headerlink" href="#spython-main-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.main package<a class="headerlink" href="#spython-main-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="subpackages">
-<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline">¶</a></h2>
+<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline"></a></h2>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="spython.main.base.html">spython.main.base package</a><ul>
@@ -211,260 +125,308 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to thi
 </div>
 </div>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.main.apps">
-<span id="spython-main-apps-module"></span><h2>spython.main.apps module<a class="headerlink" href="#module-spython.main.apps" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-apps-module"></span><h2>spython.main.apps module<a class="headerlink" href="#module-spython.main.apps" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.apps.apps">
-<code class="sig-prename descclassname">spython.main.apps.</code><code class="sig-name descname">apps</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">full_path</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">root</span><span class="o">=</span><span class="default_value">''</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/apps.html#apps"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.apps.apps" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.apps.apps">
+<code class="sig-prename descclassname"><span class="pre">spython.main.apps.</span></code><code class="sig-name descname"><span class="pre">apps</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">full_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">root</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/apps.html#apps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.apps.apps" title="Permalink to this definition"></a></dt>
 <dd><p>return list of SCIF apps in image. The Singularity software serves
 a scientific filesystem integration that will install apps to
 /scif/apps and associated data to /scif/data. For more information
 about SCIF, see <a class="reference external" href="https://sci-f.github.io">https://sci-f.github.io</a>. Note that this seems
 to be deprecated in Singularity 3.x.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>full_path</strong> (<em>if True, return relative to scif base folder</em>)</p></li>
-<li><p><strong>image_path</strong> (<em>full path to the image</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>full_path</strong> (<em>if True, return relative to scif base folder</em>)</li>
+<li><strong>image_path</strong> (<em>full path to the image</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.build">
-<span id="spython-main-build-module"></span><h2>spython.main.build module<a class="headerlink" href="#module-spython.main.build" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-build-module"></span><h2>spython.main.build module<a class="headerlink" href="#module-spython.main.build" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.build.build">
-<code class="sig-prename descclassname">spython.main.build.</code><code class="sig-name descname">build</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">recipe</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">isolated</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sandbox</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">writable</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">build_folder</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">robot_name</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">ext</span><span class="o">=</span><span class="default_value">'sif'</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">stream</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">force</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">return_result</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/build.html#build"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.build.build" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.build.build">
+<code class="sig-prename descclassname"><span class="pre">spython.main.build.</span></code><code class="sig-name descname"><span class="pre">build</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">recipe</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">isolated</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sandbox</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">writable</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">build_folder</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">robot_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">ext</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sif'</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">stream</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">force</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">return_result</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/build.html#build"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.build.build" title="Permalink to this definition"></a></dt>
 <dd><p>build a singularity image, optionally for an isolated build
 (requires sudo). If you specify to stream, expect the image name
 and an iterator to be returned.</p>
 <p>image, builder = Client.build(…)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>recipe</strong> (<em>the path to the recipe file (or source to build from). If not</em>) – defined, we look for “Singularity” file in $PWD</p></li>
-<li><p><strong>image</strong> (<em>the image to build (if None, will use arbitary name</em>)</p></li>
-<li><p><strong>isolated</strong> (<em>if True, run build with –isolated flag</em>)</p></li>
-<li><p><strong>sandbox</strong> (<em>if True, create a writable sandbox</em>)</p></li>
-<li><p><strong>writable</strong> (<em>if True, use writable ext3 (sandbox takes preference)</em>)</p></li>
-<li><p><strong>build_folder</strong> (<em>where the container should be built.</em>)</p></li>
-<li><p><strong>ext</strong> (<em>the image extension to use.</em>)</p></li>
-<li><p><strong>robot_name</strong> (<em>boolean, default False. if you don’t give your image a</em>) – name (with “image”) then a fun robot name will be generated
-instead. Highly recommended :)</p></li>
-<li><p><strong>sudo</strong> (<em>give sudo to the command (or not) default is True for build</em>)</p></li>
-<li><p><strong>sudo_options</strong> (<em>options to pass to sudo (e.g. –preserve-env=SINGULARITY_CACHEDIR,SINGULARITY_TMPDIR)</em>)</p></li>
-<li><p><strong>options</strong> (<em>for all other options, specify them in this list.</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>quiet</strong> (<em>quiet verbose printing from the client.</em>)</p></li>
-<li><p><strong>return_result</strong> (<em>if True, return complete error code / message dictionary</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>recipe</strong> (<em>the path to the recipe file (or source to build from). If not</em>) – defined, we look for “Singularity” file in $PWD</li>
+<li><strong>image</strong> (<em>the image to build (if None, will use arbitrary name</em>)</li>
+<li><strong>isolated</strong> (<em>if True, run build with –isolated flag</em>)</li>
+<li><strong>sandbox</strong> (<em>if True, create a writable sandbox</em>)</li>
+<li><strong>writable</strong> (<em>if True, use writable ext3 (sandbox takes preference)</em>)</li>
+<li><strong>build_folder</strong> (<em>where the container should be built.</em>)</li>
+<li><strong>ext</strong> (<em>the image extension to use.</em>)</li>
+<li><strong>robot_name</strong> (<em>boolean, default False. if you don’t give your image a</em>) – name (with “image”) then a fun robot name will be generated
+instead. Highly recommended :)</li>
+<li><strong>sudo</strong> (<em>give sudo to the command (or not) default is True for build</em>)</li>
+<li><strong>sudo_options</strong> (<em>options to pass to sudo (e.g. –preserve-env=SINGULARITY_CACHEDIR,SINGULARITY_TMPDIR)</em>)</li>
+<li><strong>options</strong> (<em>for all other options, specify them in this list.</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>quiet</strong> (<em>quiet verbose printing from the client.</em>)</li>
+<li><strong>return_result</strong> (<em>if True, return complete error code / message dictionary</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.execute">
-<span id="spython-main-execute-module"></span><h2>spython.main.execute module<a class="headerlink" href="#module-spython.main.execute" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-execute-module"></span><h2>spython.main.execute module<a class="headerlink" href="#module-spython.main.execute" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.execute.execute">
-<code class="sig-prename descclassname">spython.main.execute.</code><code class="sig-name descname">execute</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">command</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">app</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">writable</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">contain</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">bind</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">stream</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">nv</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">return_result</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">environ</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/execute.html#execute"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.execute.execute" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.execute.execute">
+<code class="sig-prename descclassname"><span class="pre">spython.main.execute.</span></code><code class="sig-name descname"><span class="pre">execute</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">command</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">app</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">writable</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">contain</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">bind</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">stream</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">nv</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">return_result</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">environ</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/execute.html#execute"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.execute.execute" title="Permalink to this definition"></a></dt>
 <dd><p>execute: send a command to a container</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>full path to singularity image</em>)</p></li>
-<li><p><strong>command</strong> (<em>command to send to container</em>)</p></li>
-<li><p><strong>app</strong> (<em>if not None, execute a command in context of an app</em>)</p></li>
-<li><p><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</p></li>
-<li><p><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</p></li>
-<li><p><strong>options</strong> (<em>an optional list of options to provide to execute.</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
-directories within your container using bind mounts</p></li>
-<li><p><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</p></li>
-<li><p><strong>return_result</strong> (<em>if True, return entire json object with return code</em>) – and message result not (default)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>full path to singularity image</em>)</li>
+<li><strong>command</strong> (<em>command to send to container</em>)</li>
+<li><strong>app</strong> (<em>if not None, execute a command in context of an app</em>)</li>
+<li><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</li>
+<li><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</li>
+<li><strong>options</strong> (<em>an optional list of options to provide to execute.</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
+directories within your container using bind mounts</li>
+<li><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</li>
+<li><strong>return_result</strong> (<em>if True, return entire json object with return code</em>) – and message result not (default)</li>
+<li><strong>quiet</strong> (<em>Do not print verbose output.</em>)</li>
+<li><strong>environ</strong> (<em>extra environment to add.</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.execute.shell">
-<code class="sig-prename descclassname">spython.main.execute.</code><code class="sig-name descname">shell</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image</span></em>, <em class="sig-param"><span class="n">app</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">writable</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">contain</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">bind</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">nv</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/execute.html#shell"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.execute.shell" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.execute.shell">
+<code class="sig-prename descclassname"><span class="pre">spython.main.execute.</span></code><code class="sig-name descname"><span class="pre">shell</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">image</span></span></em>, <em><span class="n"><span class="pre">app</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">writable</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">contain</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">bind</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">nv</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/execute.html#shell"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.execute.shell" title="Permalink to this definition"></a></dt>
 <dd><p>shell into a container. A user is advised to use singularity to do
 this directly, however this function is useful for supporting tools.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>full path to singularity image</em>)</p></li>
-<li><p><strong>app</strong> (<em>if not None, execute a shell in context of an app</em>)</p></li>
-<li><p><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</p></li>
-<li><p><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</p></li>
-<li><p><strong>options</strong> (<em>an optional list of options to provide to shell.</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
-directories within your container using bind mounts</p></li>
-<li><p><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>full path to singularity image</em>)</li>
+<li><strong>app</strong> (<em>if not None, execute a shell in context of an app</em>)</li>
+<li><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</li>
+<li><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</li>
+<li><strong>options</strong> (<em>an optional list of options to provide to shell.</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
+directories within your container using bind mounts</li>
+<li><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.help">
-<span id="spython-main-help-module"></span><h2>spython.main.help module<a class="headerlink" href="#module-spython.main.help" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-help-module"></span><h2>spython.main.help module<a class="headerlink" href="#module-spython.main.help" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.help.helpcmd">
-<code class="sig-prename descclassname">spython.main.help.</code><code class="sig-name descname">helpcmd</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">command</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/help.html#helpcmd"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.help.helpcmd" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.help.helpcmd">
+<code class="sig-prename descclassname"><span class="pre">spython.main.help.</span></code><code class="sig-name descname"><span class="pre">helpcmd</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">command</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/help.html#helpcmd"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.help.helpcmd" title="Permalink to this definition"></a></dt>
 <dd><p>help prints the general function help, or help for a specific command</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>command</strong> (<em>the command to get help for, if none, prints general help</em>)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>command</strong> (<em>the command to get help for, if none, prints general help</em>)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.inspect">
-<span id="spython-main-inspect-module"></span><h2>spython.main.inspect module<a class="headerlink" href="#module-spython.main.inspect" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-inspect-module"></span><h2>spython.main.inspect module<a class="headerlink" href="#module-spython.main.inspect" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.inspect.inspect">
-<code class="sig-prename descclassname">spython.main.inspect.</code><code class="sig-name descname">inspect</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">json</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">app</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/inspect.html#inspect"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.inspect.inspect" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.inspect.inspect">
+<code class="sig-prename descclassname"><span class="pre">spython.main.inspect.</span></code><code class="sig-name descname"><span class="pre">inspect</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">json</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">app</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/inspect.html#inspect"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.inspect.inspect" title="Permalink to this definition"></a></dt>
 <dd><p>inspect will show labels, defile, runscript, and tests for an image</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>path of image to inspect</em>)</p></li>
-<li><p><strong>json</strong> (<em>print json instead of raw text (default True)</em>)</p></li>
-<li><p><strong>quiet</strong> (<em>Don’t print result to the screen (default True)</em>)</p></li>
-<li><p><strong>app</strong> (<em>if defined, return help in context of an app</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>path of image to inspect</em>)</li>
+<li><strong>json</strong> (<em>print json instead of raw text (default True)</em>)</li>
+<li><strong>quiet</strong> (<em>Don’t print result to the screen (default True)</em>)</li>
+<li><strong>app</strong> (<em>if defined, return help in context of an app</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.inspect.parse_labels">
-<code class="sig-prename descclassname">spython.main.inspect.</code><code class="sig-name descname">parse_labels</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">result</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/inspect.html#parse_labels"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.inspect.parse_labels" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.inspect.parse_labels">
+<code class="sig-prename descclassname"><span class="pre">spython.main.inspect.</span></code><code class="sig-name descname"><span class="pre">parse_labels</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">result</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/inspect.html#parse_labels"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.inspect.parse_labels" title="Permalink to this definition"></a></dt>
 <dd><p>fix up the labels, meaning parse to json if needed, and return
 original updated object</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>result</strong> (<em>the json object to parse from inspect</em>)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>result</strong> (<em>the json object to parse from inspect</em>)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.instances">
-<span id="spython-main-instances-module"></span><h2>spython.main.instances module<a class="headerlink" href="#module-spython.main.instances" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-instances-module"></span><h2>spython.main.instances module<a class="headerlink" href="#module-spython.main.instances" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.instances.list_instances">
-<code class="sig-prename descclassname">spython.main.instances.</code><code class="sig-name descname">list_instances</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">return_json</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/instances.html#list_instances"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.instances.list_instances" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.instances.list_instances">
+<code class="sig-prename descclassname"><span class="pre">spython.main.instances.</span></code><code class="sig-name descname"><span class="pre">list_instances</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">return_json</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/instances.html#list_instances"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.instances.list_instances" title="Permalink to this definition"></a></dt>
 <dd><p>list instances. For Singularity, this is provided as a command sub
 group.</p>
 <p>singularity instance list</p>
 <p>Return codes provided are different from standard linux:
 see <a class="reference external" href="https://github.com/singularityware/singularity/issues/1706">https://github.com/singularityware/singularity/issues/1706</a>
 Since we expect json output, we don’t support older versions of Singularity.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>return_json</strong> (<em>return a json list of instances instead of objects (False)</em>)</p></li>
-<li><p><strong>name</strong> (<em>if defined, return the list for just one instance (used to ged pid)</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>Return Code  –   Reason</strong></p></li>
-<li><p><strong>0 – Instances Found</strong></p></li>
-<li><p><strong>1 – No Instances, libexecdir value not found, functions file not found</strong></p></li>
-<li><p><strong>255 – Couldn’t get UID</strong></p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>return_json</strong> (<em>return a json list of instances instead of objects (False)</em>)</li>
+<li><strong>name</strong> (<em>if defined, return the list for just one instance (used to ged pid)</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>Return Code  –   Reason</strong></li>
+<li><strong>0 – Instances Found</strong></li>
+<li><strong>1 – No Instances, libexecdir value not found, functions file not found</strong></li>
+<li><strong>255 – Couldn’t get UID</strong></li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.main.instances.stopall">
-<code class="sig-prename descclassname">spython.main.instances.</code><code class="sig-name descname">stopall</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/instances.html#stopall"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.instances.stopall" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.instances.stopall">
+<code class="sig-prename descclassname"><span class="pre">spython.main.instances.</span></code><code class="sig-name descname"><span class="pre">stopall</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/instances.html#stopall"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.instances.stopall" title="Permalink to this definition"></a></dt>
 <dd><p>stop ALL instances. This command is only added to the command group
 as it doesn’t make sense to call from a single instance</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>sudo</strong> (<em>if the command should be done with sudo (exposes different set of</em>) – instances)</p>
-</dd>
-</dl>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>sudo</strong> (<em>if the command should be done with sudo (exposes different set of</em>) – instances)</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.pull">
-<span id="spython-main-pull-module"></span><h2>spython.main.pull module<a class="headerlink" href="#module-spython.main.pull" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-pull-module"></span><h2>spython.main.pull module<a class="headerlink" href="#module-spython.main.pull" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.pull.pull">
-<code class="sig-prename descclassname">spython.main.pull.</code><code class="sig-name descname">pull</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">pull_folder</span><span class="o">=</span><span class="default_value">''</span></em>, <em class="sig-param"><span class="n">ext</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">force</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">capture</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">stream</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/pull.html#pull"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.pull.pull" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.pull.pull">
+<code class="sig-prename descclassname"><span class="pre">spython.main.pull.</span></code><code class="sig-name descname"><span class="pre">pull</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">pull_folder</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em><span class="n"><span class="pre">ext</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sif'</span></span></em>, <em><span class="n"><span class="pre">force</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">capture</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">stream</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/pull.html#pull"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.pull.pull" title="Permalink to this definition"></a></dt>
 <dd><p>pull will pull a singularity hub or Docker image</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>the complete image uri. If not provided, the client loaded is used</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>pull_folder</strong> (<em>if not defined, pulls to $PWD (‘’). If defined, pulls to</em>) – user specified location instead.</p></li>
-<li><p><strong>Docker and Singularity Hub Naming</strong></p></li>
-<li><p><strong>———————————</strong></p></li>
-<li><p><strong>name</strong> (<em>a custom name to use, to override default</em>)</p></li>
-<li><p><strong>ext</strong> (<em>if no name specified, the default extension to use.</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>the complete image uri. If not provided, the client loaded is used</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>pull_folder</strong> (<em>if not defined, pulls to $PWD (”). If defined, pulls to</em>) – user specified location instead.</li>
+<li><strong>Docker and Singularity Hub Naming</strong></li>
+<li><strong>———————————</strong></li>
+<li><strong>name</strong> (<em>a custom name to use, to override default</em>)</li>
+<li><strong>ext</strong> (<em>if no name specified, the default extension to use.</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main.run">
-<span id="spython-main-run-module"></span><h2>spython.main.run module<a class="headerlink" href="#module-spython.main.run" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-run-module"></span><h2>spython.main.run module<a class="headerlink" href="#module-spython.main.run" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.run.run">
-<code class="sig-prename descclassname">spython.main.run.</code><code class="sig-name descname">run</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">self</span></em>, <em class="sig-param"><span class="n">image</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">args</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">app</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">writable</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">contain</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">bind</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">stream</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">nv</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">singularity_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">return_result</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/run.html#run"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.run.run" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.run.run">
+<code class="sig-prename descclassname"><span class="pre">spython.main.run.</span></code><code class="sig-name descname"><span class="pre">run</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">self</span></span></em>, <em><span class="n"><span class="pre">image</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">args</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">app</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">writable</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">contain</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">bind</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">stream</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">nv</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">singularity_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">return_result</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/run.html#run"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.run.run" title="Permalink to this definition"></a></dt>
 <dd><p>run will run the container, with or withour arguments (which
 should be provided in a list)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>image</strong> (<em>full path to singularity image</em>)</p></li>
-<li><p><strong>args</strong> (<em>args to include with the run</em>)</p></li>
-<li><p><strong>app</strong> (<em>if not None, execute a command in context of an app</em>)</p></li>
-<li><p><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</p></li>
-<li><p><strong>options</strong> (<em>an optional list of options to provide to run.</em>)</p></li>
-<li><p><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</p></li>
-<li><p><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</p></li>
-<li><p><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
-directories within your container using bind mounts</p></li>
-<li><p><strong>stream</strong> (<em>if True, return &lt;generator&gt; for the user to run</em>)</p></li>
-<li><p><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</p></li>
-<li><p><strong>return_result</strong> (<em>if True, return entire json object with return code</em>) – and message result (default is False)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>image</strong> (<em>full path to singularity image</em>)</li>
+<li><strong>args</strong> (<em>args to include with the run</em>)</li>
+<li><strong>app</strong> (<em>if not None, execute a command in context of an app</em>)</li>
+<li><strong>writable</strong> (<em>This option makes the file system accessible as read/write</em>)</li>
+<li><strong>options</strong> (<em>an optional list of options to provide to run.</em>)</li>
+<li><strong>singularity_options</strong> (<em>a list of options to provide to the singularity client</em>)</li>
+<li><strong>contain</strong> (<em>This option disables the automatic sharing of writable</em>) – filesystems on your host</li>
+<li><strong>bind</strong> (<em>list or single string of bind paths.</em>) – This option allows you to map directories on your host system to
+directories within your container using bind mounts</li>
+<li><strong>stream</strong> (<em>if True, return &lt;generator&gt; for the user to run</em>)</li>
+<li><strong>nv</strong> (<em>if True, load Nvidia Drivers in runtime (default False)</em>)</li>
+<li><strong>return_result</strong> (<em>if True, return entire json object with return code</em>) – and message result (default is False)</li>
+<li><strong>quiet</strong> (<em>print the command to the user</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.main">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.main" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.main" title="Permalink to this headline"></a></h2>
 <dl class="py function">
-<dt id="spython.main.get_client">
-<code class="sig-prename descclassname">spython.main.</code><code class="sig-name descname">get_client</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">debug</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main.html#get_client"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.get_client" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.get_client">
+<code class="sig-prename descclassname"><span class="pre">spython.main.</span></code><code class="sig-name descname"><span class="pre">get_client</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">debug</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main.html#get_client"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.get_client" title="Permalink to this definition"></a></dt>
 <dd><p>get the client and perform imports not on init, in case there are any
 initialization or import errors.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>quiet</strong> (<em>if True, suppress most output about the client</em>)</p></li>
-<li><p><strong>debug</strong> (<em>turn on debugging mode</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>quiet</strong> (<em>if True, suppress most output about the client</em>)</li>
+<li><strong>debug</strong> (<em>turn on debugging mode</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 </div>
@@ -472,58 +434,33 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 
            </div>
-           
           </div>
-          <footer>
-  
-    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
-      
-        <a href="spython.main.base.html" class="btn btn-neutral float-right" title="spython.main.base package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
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-      
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+        <a href="spython.main.base.html" class="btn btn-neutral float-right" title="spython.main.base package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
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-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
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-  
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+  <script>
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           SphinxRtdTheme.Navigation.enable(true);
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diff --git a/docs/api/source/spython.main.parse.html b/docs/api/source/spython.main.parse.html
index 7b5419f4..3ab8e2b4 100644
--- a/docs/api/source/spython.main.parse.html
+++ b/docs/api/source/spython.main.parse.html
@@ -1,71 +1,36 @@
-
-
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-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
 <head>
-  <meta charset="utf-8">
-  
-  <meta name="viewport" content="width=device-width, initial-scale=1.0">
-  
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.main.parse package &mdash; Singularity Python API 1 documentation</title>
-  
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-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
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+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../assets/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
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   <![endif]-->
   
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-      <script type="text/javascript" id="documentation_options" data-url_root="../" src="../assets/documentation_options.js"></script>
+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
         <script src="../assets/jquery.js"></script>
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         <script src="../assets/doctools.js"></script>
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+    <script src="../assets/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
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     <link rel="prev" title="spython.main.base package" href="spython.main.base.html" /> 
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-<body class="wy-body-for-nav">
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+<body class="wy-body-for-nav"> 
   <div class="wy-grid-for-nav">
-    
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-          
-
-          
-            <a href="../index.html" class="icon icon-home" alt="Documentation Home"> Singularity Python API
-          
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-          
+            <a href="../index.html" class="icon icon-home"> Singularity Python API
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-            
-            
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-          
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -73,18 +38,7 @@
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   </form>
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-
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-        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
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+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
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 <li class="toctree-l1 current"><a class="reference internal" href="spython.html">spython package</a><ul class="current">
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@@ -116,117 +70,79 @@
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 </ul>
 
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-        
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     </nav>
 
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
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-      <nav class="wy-nav-top" aria-label="top navigation">
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+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
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-    
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-        
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-        
           <li><a href="spython.main.html">spython.main package</a> &raquo;</li>
-        
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-    
-    
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-            
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            <div itemprop="articleBody">
-            
+             
   <div class="section" id="spython-main-parse-package">
-<h1>spython.main.parse package<a class="headerlink" href="#spython-main-parse-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.main.parse package<a class="headerlink" href="#spython-main-parse-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="spython-main-parse-converters-module">
-<h2>spython.main.parse.converters module<a class="headerlink" href="#spython-main-parse-converters-module" title="Permalink to this headline">¶</a></h2>
+<h2>spython.main.parse.converters module<a class="headerlink" href="#spython-main-parse-converters-module" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="spython-main-parse-docker-module">
-<h2>spython.main.parse.docker module<a class="headerlink" href="#spython-main-parse-docker-module" title="Permalink to this headline">¶</a></h2>
+<h2>spython.main.parse.docker module<a class="headerlink" href="#spython-main-parse-docker-module" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="spython-main-parse-environment-module">
-<h2>spython.main.parse.environment module<a class="headerlink" href="#spython-main-parse-environment-module" title="Permalink to this headline">¶</a></h2>
+<h2>spython.main.parse.environment module<a class="headerlink" href="#spython-main-parse-environment-module" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.main.parse.recipe">
-<span id="spython-main-parse-recipe-module"></span><h2>spython.main.parse.recipe module<a class="headerlink" href="#module-spython.main.parse.recipe" title="Permalink to this headline">¶</a></h2>
+<span id="spython-main-parse-recipe-module"></span><h2>spython.main.parse.recipe module<a class="headerlink" href="#module-spython.main.parse.recipe" title="Permalink to this headline"></a></h2>
 <dl class="py class">
-<dt id="spython.main.parse.recipe.Recipe">
-<em class="property">class </em><code class="sig-prename descclassname">spython.main.parse.recipe.</code><code class="sig-name descname">Recipe</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">recipe</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">layer</span><span class="o">=</span><span class="default_value">1</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/parse/recipe.html#Recipe"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.parse.recipe.Recipe" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dt class="sig sig-object py" id="spython.main.parse.recipe.Recipe">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><code class="sig-prename descclassname"><span class="pre">spython.main.parse.recipe.</span></code><code class="sig-name descname"><span class="pre">Recipe</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">recipe</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">layer</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/parse/recipe.html#Recipe"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.parse.recipe.Recipe" title="Permalink to this definition"></a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.10)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <p>a recipe includes an environment, labels, runscript or command,
 and install sequence. This object is interacted with by a Parser
 (intended to popualte the recipe with content) and a Writer (intended
 to write a recipe to file). The parsers and writers are located in
 parsers.py, and writers.py, respectively. The user is also free to use
 the recipe class to build recipes.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>recipe</strong> (<em>the original recipe file, parsed by the subclass either</em>) – DockerParser or SingularityParser</p></li>
-<li><p><strong>layer</strong> (<em>the count of the layer, for human readability</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>recipe</strong> (<em>the original recipe file, parsed by the subclass either</em>) – DockerParser or SingularityParser</li>
+<li><strong>layer</strong> (<em>the count of the layer, for human readability</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 <dl class="py method">
-<dt id="spython.main.parse.recipe.Recipe.json">
-<code class="sig-name descname">json</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/parse/recipe.html#Recipe.json"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.main.parse.recipe.Recipe.json" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.main.parse.recipe.Recipe.json">
+<code class="sig-name descname"><span class="pre">json</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/main/parse/recipe.html#Recipe.json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.main.parse.recipe.Recipe.json" title="Permalink to this definition"></a></dt>
 <dd><p>return a dictionary version of the recipe, intended to be parsed
 or printed as json.</p>
-<dl class="simple">
-<dt>Returns: a dictionary of attributes including cmd, comments,</dt><dd><p>entrypoint, environ, files, install, labels, ports,
+<dl class="docutils">
+<dt>Returns: a dictionary of attributes including cmd, comments,</dt><dd>entrypoint, environ, files, install, labels, ports,
 test, volumes, and workdir, organized by layer for
-multistage builds.</p>
-</dd>
+multistage builds.</dd>
 </dl>
 </dd></dl>
 
@@ -234,67 +150,42 @@ <h2>spython.main.parse.environment module<a class="headerlink" href="#spython-ma
 
 </div>
 <div class="section" id="spython-main-parse-singularity-module">
-<h2>spython.main.parse.singularity module<a class="headerlink" href="#spython-main-parse-singularity-module" title="Permalink to this headline">¶</a></h2>
+<h2>spython.main.parse.singularity module<a class="headerlink" href="#spython-main-parse-singularity-module" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.main.parse">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.main.parse" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.main.parse" title="Permalink to this headline"></a></h2>
 </div>
 </div>
 
 
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diff --git a/docs/api/source/spython.tests.html b/docs/api/source/spython.tests.html
index e15dd0e2..a0a8de38 100644
--- a/docs/api/source/spython.tests.html
+++ b/docs/api/source/spython.tests.html
@@ -1,69 +1,34 @@
-
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-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
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+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.tests package &mdash; Singularity Python API 1 documentation</title>
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-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
-
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+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
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+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
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     <link rel="index" title="Index" href="../genindex.html" />
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+<body class="wy-body-for-nav"> 
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-          
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+            <a href="../index.html" class="icon icon-home"> Singularity Python API
           </a>
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@@ -71,272 +36,80 @@
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   </form>
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-<div role="navigation" aria-label="breadcrumbs navigation">
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+          <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
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            <div itemprop="articleBody">
-            
+             
   <div class="section" id="spython-tests-package">
-<h1>spython.tests package<a class="headerlink" href="#spython-tests-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.tests package<a class="headerlink" href="#spython-tests-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
-<div class="section" id="module-spython.tests.test_client">
-<span id="spython-tests-test-client-module"></span><h2>spython.tests.test_client module<a class="headerlink" href="#module-spython.tests.test_client" title="Permalink to this headline">¶</a></h2>
-<dl class="py function">
-<dt id="spython.tests.test_client.test_build_from_docker">
-<code class="sig-prename descclassname">spython.tests.test_client.</code><code class="sig-name descname">test_build_from_docker</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">tmp_path</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_client.html#test_build_from_docker"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_client.test_build_from_docker" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_client.test_docker_pull">
-<code class="sig-prename descclassname">spython.tests.test_client.</code><code class="sig-name descname">test_docker_pull</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">docker_container</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_client.html#test_docker_pull"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_client.test_docker_pull" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_client.test_execute">
-<code class="sig-prename descclassname">spython.tests.test_client.</code><code class="sig-name descname">test_execute</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">docker_container</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_client.html#test_execute"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_client.test_execute" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_client.test_execute_with_called_process_error">
-<code class="sig-prename descclassname">spython.tests.test_client.</code><code class="sig-name descname">test_execute_with_called_process_error</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">capsys</span></em>, <em class="sig-param"><span class="n">docker_container</span></em>, <em class="sig-param"><span class="n">return_code</span></em>, <em class="sig-param"><span class="n">tmp_path</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_client.html#test_execute_with_called_process_error"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_client.test_execute_with_called_process_error" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_client.test_execute_with_return_code">
-<code class="sig-prename descclassname">spython.tests.test_client.</code><code class="sig-name descname">test_execute_with_return_code</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">docker_container</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_client.html#test_execute_with_return_code"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_client.test_execute_with_return_code" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_client.test_export">
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-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_client.test_inspect">
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-<dd></dd></dl>
-
+<div class="section" id="spython-tests-test-client-module">
+<h2>spython.tests.test_client module<a class="headerlink" href="#spython-tests-test-client-module" title="Permalink to this headline"></a></h2>
 </div>
-<div class="section" id="module-spython.tests.test_instances">
-<span id="spython-tests-test-instances-module"></span><h2>spython.tests.test_instances module<a class="headerlink" href="#module-spython.tests.test_instances" title="Permalink to this headline">¶</a></h2>
-<dl class="py class">
-<dt id="spython.tests.test_instances.TestInstanceFuncs">
-<em class="property">class </em><code class="sig-prename descclassname">spython.tests.test_instances.</code><code class="sig-name descname">TestInstanceFuncs</code><a class="reference internal" href="../modules/spython/tests/test_instances.html#TestInstanceFuncs"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_instances.TestInstanceFuncs" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
-<dl class="py method">
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-<dd></dd></dl>
-
-<dl class="py method">
-<dt id="spython.tests.test_instances.TestInstanceFuncs.test_instance_cmds">
-<code class="sig-name descname">test_instance_cmds</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">docker_container</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_instances.html#TestInstanceFuncs.test_instance_cmds"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_instances.TestInstanceFuncs.test_instance_cmds" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-</dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_instances.test_has_no_instances">
-<code class="sig-prename descclassname">spython.tests.test_instances.</code><code class="sig-name descname">test_has_no_instances</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_instances.html#test_has_no_instances"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_instances.test_has_no_instances" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_instances.test_instance_class">
-<code class="sig-prename descclassname">spython.tests.test_instances.</code><code class="sig-name descname">test_instance_class</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_instances.html#test_instance_class"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_instances.test_instance_class" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
+<div class="section" id="spython-tests-test-instances-module">
+<h2>spython.tests.test_instances module<a class="headerlink" href="#spython-tests-test-instances-module" title="Permalink to this headline"></a></h2>
 </div>
-<div class="section" id="module-spython.tests.test_utils">
-<span id="spython-tests-test-utils-module"></span><h2>spython.tests.test_utils module<a class="headerlink" href="#module-spython.tests.test_utils" title="Permalink to this headline">¶</a></h2>
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_ScopedEnvVar">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_ScopedEnvVar</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_ScopedEnvVar"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_ScopedEnvVar" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_check_get_singularity_version">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_check_get_singularity_version</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_check_get_singularity_version"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_check_get_singularity_version" title="Permalink to this definition">¶</a></dt>
-<dd><p>check that the singularity version is found to be that installed</p>
-</dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_check_get_singularity_version_info">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_check_get_singularity_version_info</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_check_get_singularity_version_info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_check_get_singularity_version_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>Check that the version_info is correct</p>
-</dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_check_install">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_check_install</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_check_install"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_check_install" title="Permalink to this definition">¶</a></dt>
-<dd><p>check install is used to check if a particular software is installed.
-If no command is provided, singularity is assumed to be the test case</p>
-</dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_decode">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_decode</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_decode"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_decode" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_get_installdir">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_get_installdir</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_get_installdir"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_get_installdir" title="Permalink to this definition">¶</a></dt>
-<dd><p>get install directory should return the base of where singularity
-is installed</p>
-</dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_remove_uri">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_remove_uri</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_remove_uri"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_remove_uri" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_split_uri">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_split_uri</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_split_uri"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_split_uri" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_write_bad_json">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_write_bad_json</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">tmp_path</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_write_bad_json"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_write_bad_json" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_write_json">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_write_json</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">tmp_path</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_write_json"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_write_json" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt id="spython.tests.test_utils.test_write_read_files">
-<code class="sig-prename descclassname">spython.tests.test_utils.</code><code class="sig-name descname">test_write_read_files</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">tmp_path</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/tests/test_utils.html#test_write_read_files"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.tests.test_utils.test_write_read_files" title="Permalink to this definition">¶</a></dt>
-<dd><p>test_write_read_files will test the functions write_file and read_file</p>
-</dd></dl>
-
+<div class="section" id="spython-tests-test-utils-module">
+<h2>spython.tests.test_utils module<a class="headerlink" href="#spython-tests-test-utils-module" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.tests">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.tests" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.tests" title="Permalink to this headline"></a></h2>
 </div>
 </div>
 
 
            </div>
-           
           </div>
           <footer>
-  
 
   <hr/>
 
   <div role="contentinfo">
-    <p>
-        
-        &copy; Copyright 2017-2021, Vanessa Sochat
-
-    </p>
+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
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-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
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+  <script>
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+  </script> 
 
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diff --git a/docs/api/source/spython.utils.html b/docs/api/source/spython.utils.html
index 1ac09030..bc9c4ded 100644
--- a/docs/api/source/spython.utils.html
+++ b/docs/api/source/spython.utils.html
@@ -1,71 +1,36 @@
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-<html class="writer-html5" lang="en" >
+<html class="writer-html4" lang="en" >
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-  <meta charset="utf-8">
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+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>spython.utils package &mdash; Singularity Python API 1 documentation</title>
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-  <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
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+      <link rel="stylesheet" href="../assets/pygments.css" type="text/css" />
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+        <script data-url_root="../" id="documentation_options" src="../assets/documentation_options.js"></script>
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+<body class="wy-body-for-nav"> 
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-          
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+            <a href="../index.html" class="icon icon-home"> Singularity Python API
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-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
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-        
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-        
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            <div itemprop="articleBody">
-            
+             
   <div class="section" id="spython-utils-package">
-<h1>spython.utils package<a class="headerlink" href="#spython-utils-package" title="Permalink to this headline">¶</a></h1>
+<h1>spython.utils package<a class="headerlink" href="#spython-utils-package" title="Permalink to this headline"></a></h1>
 <div class="section" id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
 </div>
 <div class="section" id="module-spython.utils.fileio">
-<span id="spython-utils-fileio-module"></span><h2>spython.utils.fileio module<a class="headerlink" href="#module-spython.utils.fileio" title="Permalink to this headline">¶</a></h2>
-<p># Copyright (C) 2017-2021 Vanessa Sochat.</p>
+<span id="spython-utils-fileio-module"></span><h2>spython.utils.fileio module<a class="headerlink" href="#module-spython.utils.fileio" title="Permalink to this headline"></a></h2>
+<p># Copyright (C) 2017-2022 Vanessa Sochat.</p>
 <p>This Source Code Form is subject to the terms of the
 Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed
 with this file, You can obtain one at <a class="reference external" href="http://mozilla.org/MPL/2.0/">http://mozilla.org/MPL/2.0/</a>.</p>
 <dl class="py function">
-<dt id="spython.utils.fileio.mkdir_p">
-<code class="sig-prename descclassname">spython.utils.fileio.</code><code class="sig-name descname">mkdir_p</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">path</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#mkdir_p"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.fileio.mkdir_p" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.fileio.mkdir_p">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.fileio.</span></code><code class="sig-name descname"><span class="pre">mkdir_p</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#mkdir_p"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.fileio.mkdir_p" title="Permalink to this definition"></a></dt>
 <dd><p>mkdir_p attempts to get the same functionality as mkdir -p
 :param path: the path to create.</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.fileio.read_file">
-<code class="sig-prename descclassname">spython.utils.fileio.</code><code class="sig-name descname">read_file</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">filename</span></em>, <em class="sig-param"><span class="n">mode</span><span class="o">=</span><span class="default_value">'r'</span></em>, <em class="sig-param"><span class="n">readlines</span><span class="o">=</span><span class="default_value">True</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#read_file"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.fileio.read_file" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.fileio.read_file">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.fileio.</span></code><code class="sig-name descname"><span class="pre">read_file</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">filename</span></span></em>, <em><span class="n"><span class="pre">mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'r'</span></span></em>, <em><span class="n"><span class="pre">readlines</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#read_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.fileio.read_file" title="Permalink to this definition"></a></dt>
 <dd><p>write_file will open a file, “filename” and write content, “content”
 and properly close the file</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.fileio.read_json">
-<code class="sig-prename descclassname">spython.utils.fileio.</code><code class="sig-name descname">read_json</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">filename</span></em>, <em class="sig-param"><span class="n">mode</span><span class="o">=</span><span class="default_value">'r'</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#read_json"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.fileio.read_json" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.fileio.read_json">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.fileio.</span></code><code class="sig-name descname"><span class="pre">read_json</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">filename</span></span></em>, <em><span class="n"><span class="pre">mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'r'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#read_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.fileio.read_json" title="Permalink to this definition"></a></dt>
 <dd><p>read_json reads in a json file and returns
 the data structure as dict.</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.fileio.write_file">
-<code class="sig-prename descclassname">spython.utils.fileio.</code><code class="sig-name descname">write_file</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">filename</span></em>, <em class="sig-param"><span class="n">content</span></em>, <em class="sig-param"><span class="n">mode</span><span class="o">=</span><span class="default_value">'w'</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#write_file"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.fileio.write_file" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.fileio.write_file">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.fileio.</span></code><code class="sig-name descname"><span class="pre">write_file</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">filename</span></span></em>, <em><span class="n"><span class="pre">content</span></span></em>, <em><span class="n"><span class="pre">mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'w'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#write_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.fileio.write_file" title="Permalink to this definition"></a></dt>
 <dd><p>write_file will open a file, “filename” and write content, “content”
 and properly close the file</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.fileio.write_json">
-<code class="sig-prename descclassname">spython.utils.fileio.</code><code class="sig-name descname">write_json</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">json_obj</span></em>, <em class="sig-param"><span class="n">filename</span></em>, <em class="sig-param"><span class="n">mode</span><span class="o">=</span><span class="default_value">'w'</span></em>, <em class="sig-param"><span class="n">print_pretty</span><span class="o">=</span><span class="default_value">True</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#write_json"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.fileio.write_json" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.fileio.write_json">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.fileio.</span></code><code class="sig-name descname"><span class="pre">write_json</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">json_obj</span></span></em>, <em><span class="n"><span class="pre">filename</span></span></em>, <em><span class="n"><span class="pre">mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'w'</span></span></em>, <em><span class="n"><span class="pre">print_pretty</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/fileio.html#write_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.fileio.write_json" title="Permalink to this definition"></a></dt>
 <dd><p>write_json will (optionally,pretty print) a json object to file
 :param json_obj: the dict to print to json
 :param filename: the output file to write to
@@ -224,182 +138,164 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 </div>
 <div class="section" id="module-spython.utils.terminal">
-<span id="spython-utils-terminal-module"></span><h2>spython.utils.terminal module<a class="headerlink" href="#module-spython.utils.terminal" title="Permalink to this headline">¶</a></h2>
-<p># Copyright (C) 2017-2021 Vanessa Sochat.</p>
+<span id="spython-utils-terminal-module"></span><h2>spython.utils.terminal module<a class="headerlink" href="#module-spython.utils.terminal" title="Permalink to this headline"></a></h2>
+<p># Copyright (C) 2017-2022 Vanessa Sochat.</p>
 <p>This Source Code Form is subject to the terms of the
 Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed
 with this file, You can obtain one at <a class="reference external" href="http://mozilla.org/MPL/2.0/">http://mozilla.org/MPL/2.0/</a>.</p>
 <dl class="py function">
-<dt id="spython.utils.terminal.check_install">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">check_install</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">software</span><span class="o">=</span><span class="default_value">'singularity'</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">True</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#check_install"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.check_install" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.check_install">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">check_install</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">software</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'singularity'</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#check_install"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.check_install" title="Permalink to this definition"></a></dt>
 <dd><p>check_install will attempt to run the singularity command, and
 return True if installed. The command line utils will not run
 without this check.</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.format_container_name">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">format_container_name</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">name</span></em>, <em class="sig-param"><span class="n">special_characters</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#format_container_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.format_container_name" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.format_container_name">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">format_container_name</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">name</span></span></em>, <em><span class="n"><span class="pre">special_characters</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#format_container_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.format_container_name" title="Permalink to this definition"></a></dt>
 <dd><p>format_container_name will take a name supplied by the user,
 remove all special characters (except for those defined by “special-characters”
 and return the new image name.</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.get_installdir">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">get_installdir</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_installdir"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.get_installdir" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.get_installdir">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">get_installdir</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_installdir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.get_installdir" title="Permalink to this definition"></a></dt>
 <dd><p>get_installdir returns the installation directory of the application</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.get_singularity_version">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">get_singularity_version</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_singularity_version"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.get_singularity_version" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.get_singularity_version">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">get_singularity_version</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_singularity_version"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.get_singularity_version" title="Permalink to this definition"></a></dt>
 <dd><p>get the full singularity client version as reported by
 singularity –version […]. For Singularity 3.x, this means:
 “singularity version 3.0.1-1”</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.get_singularity_version_info">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">get_singularity_version_info</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_singularity_version_info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.get_singularity_version_info" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.get_singularity_version_info">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">get_singularity_version_info</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_singularity_version_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.get_singularity_version_info" title="Permalink to this definition"></a></dt>
 <dd><p>get the full singularity client version as a semantic version”</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.get_userhome">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">get_userhome</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_userhome"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.get_userhome" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.get_userhome">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">get_userhome</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_userhome"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.get_userhome" title="Permalink to this definition"></a></dt>
 <dd><p>get the user home based on the effective uid</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.get_username">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">get_username</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_username"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.get_username" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.get_username">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">get_username</span></code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#get_username"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.get_username" title="Permalink to this definition"></a></dt>
 <dd><p>get the user name based on the effective uid</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.remove_uri">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">remove_uri</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">container</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#remove_uri"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.remove_uri" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.remove_uri">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">remove_uri</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">container</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#remove_uri"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.remove_uri" title="Permalink to this definition"></a></dt>
 <dd><p>remove_uri will remove docker:// or shub:// or library:// from the uri</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.run_command">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">run_command</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cmd</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">capture</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">no_newline_regexp</span><span class="o">=</span><span class="default_value">'Progess'</span></em>, <em class="sig-param"><span class="n">quiet</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">environ</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#run_command"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.run_command" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.run_command">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">run_command</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">cmd</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">capture</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em><span class="n"><span class="pre">no_newline_regexp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Progess'</span></span></em>, <em><span class="n"><span class="pre">quiet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">environ</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#run_command"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.run_command" title="Permalink to this definition"></a></dt>
 <dd><p>run_command uses subprocess to send a command to the terminal. If
 capture is True, we use the parent stdout, so the progress bar (and
 other commands of interest) are piped to the user. This means we
 don’t return the output to parse.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>cmd</strong> (<em>the command to send, should be a list for subprocess</em>)</p></li>
-<li><p><strong>sudo</strong> (<em>if needed, add to start of command</em>)</p></li>
-<li><p><strong>no_newline_regexp</strong> (<em>the regular expression to determine skipping a</em>) – newline. Defaults to finding Progress</p></li>
-<li><p><strong>capture</strong> (<em>if True, don’t set stdout and have it go to console. This</em>) – option can print a progress bar, but won’t return the lines
-as output.</p></li>
-<li><p><strong>sudo_options</strong> (<em>string or list of strings that will be passed as options to sudo</em>)</p></li>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>cmd</strong> (<em>the command to send, should be a list for subprocess</em>)</li>
+<li><strong>sudo</strong> (<em>if needed, add to start of command</em>)</li>
+<li><strong>no_newline_regexp</strong> (<em>the regular expression to determine skipping a</em>) – newline. Defaults to finding Progress</li>
+<li><strong>capture</strong> (<em>if True, don’t set stdout and have it go to console. This</em>) – option can print a progress bar, but won’t return the lines
+as output.</li>
+<li><strong>sudo_options</strong> (<em>string or list of strings that will be passed as options to sudo</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.split_uri">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">split_uri</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">container</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#split_uri"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.split_uri" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.split_uri">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">split_uri</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">container</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#split_uri"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.split_uri" title="Permalink to this definition"></a></dt>
 <dd><p>Split the uri of a container into the protocol and image part</p>
 <p>An empty protocol is returned if none found.
 A trailing slash is removed from the image part.</p>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.stream_command">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">stream_command</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cmd</span></em>, <em class="sig-param"><span class="n">no_newline_regexp</span><span class="o">=</span><span class="default_value">'Progess'</span></em>, <em class="sig-param"><span class="n">sudo</span><span class="o">=</span><span class="default_value">False</span></em>, <em class="sig-param"><span class="n">sudo_options</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#stream_command"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.stream_command" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.stream_command">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">stream_command</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">cmd</span></span></em>, <em><span class="n"><span class="pre">no_newline_regexp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Progess'</span></span></em>, <em><span class="n"><span class="pre">sudo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em><span class="n"><span class="pre">sudo_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em><span class="n"><span class="pre">output_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'stdout'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#stream_command"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.stream_command" title="Permalink to this definition"></a></dt>
 <dd><p>stream a command (yield) back to the user, as each line is available.</p>
 <p># Example usage:
 results = []
 for line in stream_command(cmd):</p>
 <blockquote>
-<div><p>print(line, end=””)
-results.append(line)</p>
-</div></blockquote>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>cmd</strong> (<em>the command to send, should be a list for subprocess</em>)</p></li>
-<li><p><strong>no_newline_regexp</strong> (<em>the regular expression to determine skipping a</em>) – newline. Defaults to finding Progress</p></li>
-<li><p><strong>sudo_options</strong> (<em>string or list of strings that will be passed as options to sudo</em>)</p></li>
+<div>print(line, end=”“)
+results.append(line)</div></blockquote>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>cmd</strong> (<em>the command to send, should be a list for subprocess</em>)</li>
+<li><strong>no_newline_regexp</strong> (<em>the regular expression to determine skipping a</em>) – newline. Defaults to finding Progress</li>
+<li><strong>sudo_options</strong> (<em>string or list of strings that will be passed as options to sudo</em>)</li>
 </ul>
-</dd>
-</dl>
+</td>
+</tr>
+</tbody>
+</table>
 </dd></dl>
 
 <dl class="py function">
-<dt id="spython.utils.terminal.which">
-<code class="sig-prename descclassname">spython.utils.terminal.</code><code class="sig-name descname">which</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">software</span><span class="o">=</span><span class="default_value">'singularity'</span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#which"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#spython.utils.terminal.which" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="spython.utils.terminal.which">
+<code class="sig-prename descclassname"><span class="pre">spython.utils.terminal.</span></code><code class="sig-name descname"><span class="pre">which</span></code><span class="sig-paren">(</span><em><span class="n"><span class="pre">software</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'singularity'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../modules/spython/utils/terminal.html#which"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#spython.utils.terminal.which" title="Permalink to this definition"></a></dt>
 <dd><p>which returns the full path to where software is installed.</p>
 </dd></dl>
 
 </div>
 <div class="section" id="module-spython.utils">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.utils" title="Permalink to this headline">¶</a></h2>
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-spython.utils" title="Permalink to this headline"></a></h2>
 </div>
 </div>
 
 
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+    <p>&#169; Copyright 2017-2021, Vanessa Sochat.</p>
   </div>
-    
-    
-    
-    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
-    
-    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
-    
-    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
 
-</footer>
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
 
+</footer>
         </div>
       </div>
-
     </section>
-
   </div>
-  
-
-  <script type="text/javascript">
+  <script>
       jQuery(function () {
           SphinxRtdTheme.Navigation.enable(true);
       });
-  </script>
-
-  
-  
-    
-   
+  </script> 
 
 </body>
 </html>
\ No newline at end of file
diff --git a/spython/main/base/generate.py b/spython/main/base/generate.py
index b6bdfaef..532aaf0c 100644
--- a/spython/main/base/generate.py
+++ b/spython/main/base/generate.py
@@ -20,7 +20,7 @@ class RobotNamer:
         "dinosaur",
         "boopy",
         "lovely",
-        "carniverous",
+        "carnivorous",
         "hanky",
         "loopy",
         "doopy",
diff --git a/spython/main/base/logger.py b/spython/main/base/logger.py
index d47ce7dc..065e1cde 100644
--- a/spython/main/base/logger.py
+++ b/spython/main/base/logger.py
@@ -14,7 +14,7 @@ def init_level(self, quiet=False):
 
     Parameters
     ==========
-    quiet: boolean if True, set to quiet. Gets overriden by environment
+    quiet: boolean if True, set to quiet. Gets overridden by environment
            setting, and only exists to define default
 
     """
diff --git a/spython/main/build.py b/spython/main/build.py
index 76b8488d..5132b973 100644
--- a/spython/main/build.py
+++ b/spython/main/build.py
@@ -42,7 +42,7 @@ def build(
 
     recipe: the path to the recipe file (or source to build from). If not
                defined, we look for "Singularity" file in $PWD
-    image: the image to build (if None, will use arbitary name
+    image: the image to build (if None, will use arbitrary name
     isolated: if True, run build with --isolated flag
     sandbox: if True, create a writable sandbox
     writable: if True, use writable ext3 (sandbox takes preference)
diff --git a/spython/main/parse/parsers/docker.py b/spython/main/parse/parsers/docker.py
index 8b72a6cc..3a900bd7 100644
--- a/spython/main/parse/parsers/docker.py
+++ b/spython/main/parse/parsers/docker.py
@@ -22,7 +22,7 @@ def __init__(self, filename="Dockerfile", load=True):
 
         Parameters
         ==========
-        filename: the Dockerfile to parse. If not defined, deafults to
+        filename: the Dockerfile to parse. If not defined, defaults to
                   Dockerfile assumed to be in the $PWD.
         load: whether to load the recipe file (default True)
 
diff --git a/spython/utils/misc.py b/spython/utils/misc.py
index cef001e2..c5f0b35b 100644
--- a/spython/utils/misc.py
+++ b/spython/utils/misc.py
@@ -21,7 +21,7 @@ def setEnvVar(name, value):
 
 
 class ScopedEnvVar:
-    """Temporarly change an environment variable
+    """Temporarily change an environment variable
 
     Usage:
         with ScopedEnvVar("FOO", "bar"):