diff --git a/.readthedocs.yaml b/.readthedocs.yaml index ee7315e5..0f629fc6 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -9,10 +9,15 @@ build: tools: python: "3.10" jobs: + post_create_environment: + # Install poetry + # https://python-poetry.org/docs/#installing-manually + - pip install "poetry>=2.1.3,<3.0.0" post_install: - - pip install "poetry>=1.2.0,<1.3.0" - - poetry config virtualenvs.create false - - poetry install --with docs + # Install dependencies with 'docs' dependency group + # https://python-poetry.org/docs/managing-dependencies/#dependency-groups + # VIRTUAL_ENV needs to be set manually for now, see #11150 + - VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH poetry install --with docs # Build documentation in the docs/source directory with Sphinx sphinx: diff --git a/GOVERNANCE.md b/GOVERNANCE.md index 3c2cdbae..b0eae368 100644 --- a/GOVERNANCE.md +++ b/GOVERNANCE.md @@ -80,5 +80,5 @@ If no successor is named, the Steering Group seeks a successor. One member of the Steering Group steps in as interim maintainer until a successor is found. -In addition, all contributors with write access to repositories and regular activities should be added as "authors" to project and build system metadata in alphabetical order. -They may also qualify for scholarly authorship, which is managed in citation metadata as necessary and may be ordered by other criteria. +Authorship is defined by the [steering group](#hermes-steering-group) and declared in +[`CITATION.cff`](https://github.com/softwarepub/hermes/blob/main/CITATION.cff). diff --git a/poetry.lock b/poetry.lock index df93853e..47ce16c1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.1.3 and should not be changed by hand. [[package]] name = "accessible-pygments" @@ -6,6 +6,7 @@ version = "0.0.5" description = "A collection of accessible pygments styles" optional = false python-versions = ">=3.9" +groups = ["docs"] files = [ {file = "accessible_pygments-0.0.5-py3-none-any.whl", hash = "sha256:88ae3211e68a1d0b011504b2ffc1691feafce124b845bd072ab6f9f66f34d4b7"}, {file = "accessible_pygments-0.0.5.tar.gz", hash = "sha256:40918d3e6a2b619ad424cb91e556bd3bd8865443d9f22f1dcdf79e33c8046872"}, @@ -24,6 +25,7 @@ version = "0.7.16" description = "A light, configurable Sphinx theme" optional = false python-versions = ">=3.9" +groups = ["docs"] files = [ {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, @@ -35,6 +37,7 @@ version = "0.7.0" description = "Reusable constraint types to use with typing.Annotated" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, @@ -42,64 +45,69 @@ files = [ [[package]] name = "astroid" -version = "3.3.8" +version = "3.3.11" description = "An abstract syntax tree for Python with inference support." optional = false python-versions = ">=3.9.0" +groups = ["docs"] files = [ - 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generated from Snowball algorithms." optional = false -python-versions = "*" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*" +groups = ["docs"] files = [ - {file = "snowballstemmer-2.2.0-py2.py3-none-any.whl", hash = "sha256:c8e1716e83cc398ae16824e5572ae04e0d9fc2c6b985fb0f900f5f0c96ecba1a"}, - {file = "snowballstemmer-2.2.0.tar.gz", hash = "sha256:09b16deb8547d3412ad7b590689584cd0fe25ec8db3be37788be3810cbf19cb1"}, + {file = "snowballstemmer-3.0.1-py3-none-any.whl", hash = "sha256:6cd7b3897da8d6c9ffb968a6781fa6532dce9c3618a4b127d920dab764a19064"}, + {file = "snowballstemmer-3.0.1.tar.gz", hash = "sha256:6d5eeeec8e9f84d4d56b847692bacf79bc2c8e90c7f80ca4444ff8b6f2e52895"}, ] [[package]] name = "soupsieve" -version = "2.6" +version = "2.7" description = "A modern CSS selector implementation for Beautiful Soup." optional = false python-versions = ">=3.8" +groups = ["docs"] files = [ - {file = "soupsieve-2.6-py3-none-any.whl", hash = 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with live-reload in the browser." optional = false python-versions = ">=3.6" +groups = ["docs"] files = [ {file = "sphinx-autobuild-2021.3.14.tar.gz", hash = "sha256:de1ca3b66e271d2b5b5140c35034c89e47f263f2cd5db302c9217065f7443f05"}, {file = "sphinx_autobuild-2021.3.14-py3-none-any.whl", hash = "sha256:8fe8cbfdb75db04475232f05187c776f46f6e9e04cacf1e49ce81bdac649ccac"}, @@ -1867,18 +1941,19 @@ test = ["pytest", "pytest-cov"] [[package]] name = "sphinx-book-theme" -version = "1.1.3" +version = "1.1.4" description = "A clean book theme for scientific explanations and documentation with Sphinx" optional = false python-versions = ">=3.9" +groups = ["docs"] files = [ - {file = "sphinx_book_theme-1.1.3-py3-none-any.whl", hash = "sha256:a554a9a7ac3881979a87a2b10f633aa2a5706e72218a10f71be38b3c9e831ae9"}, - {file = "sphinx_book_theme-1.1.3.tar.gz", hash = "sha256:1f25483b1846cb3d353a6bc61b3b45b031f4acf845665d7da90e01ae0aef5b4d"}, + {file = "sphinx_book_theme-1.1.4-py3-none-any.whl", hash = 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--- a/pyproject.toml +++ b/pyproject.toml @@ -1,58 +1,74 @@ -# SPDX-FileCopyrightText: 2022 German Aerospace Center (DLR) +# SPDX-FileCopyrightText: 2022 German Aerospace Center (DLR), Helmholtz-Zentrum Dresden-Rossendorf # # SPDX-License-Identifier: CC0-1.0 -# SPDX-FileContributor: Stephan Druskat +# SPDX-FileContributor: Stephan Druskat # SPDX-FileContributor: Michael Meinel # SPDX-FileContributor: David Pape -[tool.poetry] -# Reference at https://python-poetry.org/docs/pyproject/ +[project] name = "hermes" -version = "0.10.0.dev0" +version = "0.10.0.dev1" description = "Workflow to publish research software with rich metadata" -homepage = "https://software-metadata.pub" -license = "Apache-2.0" -# All natural persons doing regular contributions and equipped with write access to the repo. -# Alphabetical order of last name. See also GOVERNANCE.md. +license = "Apache-2.0 AND LicenseRef-BSD-Caltech" authors = [ - "Oliver Bertuch ", - "Stephan Druskat ", - "Nitai Heeb ", - "Sophie Kernchen ", - "Michael Meinel ", - "David Pape " + { name = "Michael Meinel", email = "michael.meinel@dlr.de" }, + { name = "Stephan Druskat", email = "stephan.druskat@dlr.de" }, + { name = "Oliver Bertuch", email = "o.bertuch@fz-juelich.de" }, + { name = "Oliver Knodel", email = "o.knodel@hzdr.de" }, + { name = "David Pape", email = "d.pape@hzdr.de" }, + { name = "Sophie Kernchen", email = "sohpie.kernchen@dlr.de" }, + { name = "Nitai Heeb", email = "n.heeb@fz-juelich.de" }, +] +maintainers = [ + { name = "Stephan Druskat", email = "stephan.druskat@dlr.de" }, ] - readme = "README.md" repository = "https://github.com/softwarepub/hermes" +keywords = ["software", "publication", "metadata", "automation"] + +dependencies = [ + "ruamel.yaml>=0.17.21, <0.18.0", + "jsonschema>=3.0.0, <4.0.0", + "pyld>=2.0.3, <3.0.0", + "cffconvert>=2.0.0, <3.0.0", + "toml>=0.10.2, <1.0.0", + "pyparsing>=3.0.9, <4.0.0", + "requests>=2.28.1, <3.0.0", + "pydantic>=2.5.1, <3.0.0", + "pydantic-settings>=2.1.0, <3.0.0", + "requests-oauthlib>=2.0.0, <3.0.0", + "pynacl>=1.5.0, <2.0.0", +] +requires-python = ">=3.10, <4.0.0" + +[project.urls] +homepage = "https://hermes.software-metadata.pub" documentation = "https://hermes.software-metadata.pub" -keywords = ["publishing", "metadata", "automation"] +repository = "https://github.com/softwarepub/hermes.git" +issues = "https://github.com/softwarepub/hermes/issues" -include = [ - "hermes/schema/*.json", -] -# Stating our package explicitely here to enable -# a) including contrib packages in the future and -# b) rename the package for development snapshot releases to TestPyPI -packages = [ - { include = "hermes", from = "src" } -] +[project.scripts] +hermes = "hermes.commands.cli:main" +hermes-marketplace = "hermes.commands.marketplace:main" + + +[project.entry-points."hermes.harvest"] +cff = "hermes.commands.harvest.cff:CffHarvestPlugin" +codemeta = "hermes.commands.harvest.codemeta:CodeMetaHarvestPlugin" + +[project.entry-points."hermes.deposit"] +file = "hermes.commands.deposit.file:FileDepositPlugin" +invenio = "hermes.commands.deposit.invenio:InvenioDepositPlugin" +invenio_rdm = "hermes.commands.deposit.invenio_rdm:IvenioRDMDepositPlugin" +rodare = "hermes.commands.deposit.rodare:RodareDepositPlugin" + +[project.entry-points."hermes.postprocess"] +config_invenio_record_id = "hermes.commands.postprocess.invenio:config_record_id" +config_invenio_rdm_record_id = "hermes.commands.postprocess.invenio_rdm:config_record_id" +cff_doi = "hermes.commands.postprocess.invenio:cff_doi" -[tool.poetry.dependencies] -python = "^3.10" -"ruamel.yaml" = "^0.17.21" -jsonschema = "^3.0.0" -pyld = "^2.0.3" -cffconvert = "^2.0.0" -toml = "^0.10.2" -pyparsing = "^3.0.9" -requests = "^2.28.1" -pydantic = "^2.5.1" -pydantic-settings = "^2.1.0" -requests-oauthlib = "^2.0.0" -pynacl = "^1.5.0" [tool.poetry.group.dev.dependencies] pytest = "^7.1.1" @@ -83,24 +99,6 @@ sphinx-togglebutton="^0.3.2" reuse = "^1.1.2" sphinxcontrib-datatemplates = "^0.11.0" -[tool.poetry.plugins.console_scripts] -hermes = "hermes.commands.cli:main" -hermes-marketplace = "hermes.commands.marketplace:main" - -[tool.poetry.plugins."hermes.harvest"] -cff = "hermes.commands.harvest.cff:CffHarvestPlugin" -codemeta = "hermes.commands.harvest.codemeta:CodeMetaHarvestPlugin" - -[tool.poetry.plugins."hermes.deposit"] -file = "hermes.commands.deposit.file:FileDepositPlugin" -invenio = "hermes.commands.deposit.invenio:InvenioDepositPlugin" -invenio_rdm = "hermes.commands.deposit.invenio_rdm:IvenioRDMDepositPlugin" -rodare = "hermes.commands.deposit.rodare:RodareDepositPlugin" - -[tool.poetry.plugins."hermes.postprocess"] -config_invenio_record_id = "hermes.commands.postprocess.invenio:config_record_id" -config_invenio_rdm_record_id = "hermes.commands.postprocess.invenio_rdm:config_record_id" -cff_doi = "hermes.commands.postprocess.invenio:cff_doi" [tool.taskipy.tasks] docs-build = "poetry run sphinx-build -M html docs/source docs/build -W" @@ -108,6 +106,7 @@ docs-clean = "poetry run sphinx-build -M clean docs/source docs/build" docs-live = "poetry run sphinx-autobuild docs/source docs/build" flake8 = "poetry run flake8 ./test/ ./src/ --count --select=E9,F63,F7,F82 --statistics" + [tool.pytest.ini_options] norecursedirs = "docs/*" testpaths = [ @@ -115,6 +114,9 @@ testpaths = [ ] addopts = "--cov=hermes --cov-report term" + [build-system] -requires = ["poetry-core>=1.2.0"] +requires = [ + "poetry-core>=2.1.3, <3.0.0" +] build-backend = "poetry.core.masonry.api" diff --git a/src/hermes/utils.py b/src/hermes/utils.py index 6ef15c6b..1363d243 100644 --- a/src/hermes/utils.py +++ b/src/hermes/utils.py @@ -7,16 +7,38 @@ from importlib.metadata import metadata +def retrieve_project_urls(metadata_urls: list[str]) -> dict[str, str]: + """ + Extracts the keys and values from the project.urls section in distribution package metadata + and converts them into a dictionary. + + :param metadata_urls: The list of urls to extract from (from distribution metadata) + :return: A dictionary mapping URL names to URLs + """ + return { + url_lst[0].lower(): url_lst[1] + for url_lst in [ + metadata_url_item.split(", ", maxsplit=1) + for metadata_url_item in metadata_urls + ] + } + + hermes_metadata = metadata("hermes") +# Basic metadata hermes_name = hermes_metadata["name"] hermes_version = hermes_metadata["version"] -hermes_homepage = hermes_metadata["home-page"] +# Project URLs +hermes_urls = retrieve_project_urls(hermes_metadata.get_all("project-url", [])) +hermes_homepage = hermes_urls["homepage"] + +# Publication metadata # TODO: Fetch this from somewhere hermes_doi = "10.5281/zenodo.13311079" # hermes v0.8.1 - hermes_concept_doi = "10.5281/zenodo.13221383" """Fix "concept" DOI that always refers to the newest version.""" +# User agent hermes_user_agent = f"{hermes_name}/{hermes_version} ({hermes_homepage})" diff --git a/test/hermes_test/test_utils.py b/test/hermes_test/test_utils.py new file mode 100644 index 00000000..d660d8bd --- /dev/null +++ b/test/hermes_test/test_utils.py @@ -0,0 +1,24 @@ +# SPDX-FileCopyrightText: 2025 German Aerospace Center (DLR) +# SPDX-FileContributor: Stephan Druskat +# +# SPDX-License-Identifier: Apache-2.0 + +import toml +from pathlib import Path + +pyproject = toml.load(Path(__file__).parent.parent.parent / "pyproject.toml") +expected_name = pyproject["project"]["name"] +expected_version = pyproject["project"]["version"] +expected_homepage = pyproject["project"]["urls"]["homepage"] + + +def test_hermes_user_agent(): + """ + This assumes that no other version of `hermes` than the current one is installed + in the workspace from which the tests are run. + """ + from hermes.utils import hermes_user_agent + + assert ( + hermes_user_agent == f"{expected_name}/{expected_version} ({expected_homepage})" + )