From dcec3a9417960d1f0aa318e219ff157c11cbdc6f Mon Sep 17 00:00:00 2001
From: Dan Knight <danknight@mednet.ucla.edu>
Date: Wed, 15 Feb 2023 17:45:31 -0800
Subject: [PATCH 1/4] Base CEV report Rmd

---
 inst/CEV.report.Rmd | 16 ++++++++++++++++
 1 file changed, 16 insertions(+)
 create mode 100644 inst/CEV.report.Rmd

diff --git a/inst/CEV.report.Rmd b/inst/CEV.report.Rmd
new file mode 100644
index 0000000..8817dda
--- /dev/null
+++ b/inst/CEV.report.Rmd
@@ -0,0 +1,16 @@
+---
+params:
+    title:
+    author:
+    date:
+title: '`r params$title`'
+author: '`r params$author`'
+date: '`r params$date`'
+output: pdf_document
+---
+
+# Tree
+
+# Mutation Assignment Heatmap
+
+# Clone Summary Heatmap

From fb93f4eb4b3f51baa59630e8ed5aa5511af77e91 Mon Sep 17 00:00:00 2001
From: Dan Knight <danknight@mednet.ucla.edu>
Date: Wed, 15 Feb 2023 17:45:46 -0800
Subject: [PATCH 2/4] Basic report function

---
 R/CEV.report.R | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)
 create mode 100644 R/CEV.report.R

diff --git a/R/CEV.report.R b/R/CEV.report.R
new file mode 100644
index 0000000..b12b432
--- /dev/null
+++ b/R/CEV.report.R
@@ -0,0 +1,18 @@
+CEV.report <- function(
+    output.filename,
+    title,
+    author,
+    date = NULL
+    ) {
+    report.params <- list(
+        title = title,
+        author = author,
+        date = if (!is.null(date)) date else Sys.Date()
+        );
+
+    rmarkdown::render(
+        'inst/test.Rmd',
+        output_file = output.filename,
+        params = report.params
+        );
+    }

From 4ca62d148e95fd61cac004efc8c81587ed18950f Mon Sep 17 00:00:00 2001
From: Dan Knight <danknight@mednet.ucla.edu>
Date: Wed, 15 Feb 2023 17:53:33 -0800
Subject: [PATCH 3/4] Update changelog

---
 DESCRIPTION | 4 ++--
 NEWS        | 7 +++++++
 2 files changed, 9 insertions(+), 2 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index a73855f..957aa89 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: CancerEvolutionVisualization
 Title: Publication Quality Phylogenetic Tree Plots
-Version: 1.0.1
-Date: 2022-10-03
+Version: 1.1.0
+Date: 2023-02-15
 Authors@R: c(
 	person("Paul Boutros", role = "cre", email = "PBoutros@mednet.ucla.edu"),
 	person("Adriana Salcedo", role = "aut"),
diff --git a/NEWS b/NEWS
index 111a773..3146a72 100644
--- a/NEWS
+++ b/NEWS
@@ -1,3 +1,10 @@
+CancerEvolutionVisualization 1.1.0 2023-02-15 (Dan Knight)i
+
+ADDED
+* CEV report template and public function
+
+
+--------------------------------------------------------------------------
 CancerEvolutionVisualization 1.0.1 2022-10-03 (Dan Knight)
 
 UPDATE

From 88fafa8220cf3b6e9308394b25b0319c75028a4b Mon Sep 17 00:00:00 2001
From: Dan Knight <danknight@mednet.ucla.edu>
Date: Wed, 15 Feb 2023 17:57:46 -0800
Subject: [PATCH 4/4] Update dependencies

---
 DESCRIPTION | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 957aa89..a24945d 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -19,7 +19,8 @@ Imports:
     plyr,
     grDevices,
     utils,
-    stringr
+    stringr,
+    rmarkdown
 Suggests:
     testthat,
 	knitr