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axlbonnetaxlbonnet
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refactor VipGirder
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‎examples/tutorials/example-VipGirder.ipynb‎

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{
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"cells": [
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "e4b2f485-cb8b-4e4b-b21c-c381760fc914",
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"metadata": {},
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"outputs": [],
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"source": [
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"%load_ext autoreload"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "9a2a0f64-107e-47a3-b994-4ba55735bfa8",
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"metadata": {},
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"outputs": [],
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"source": [
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"%autoreload 2"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "f72d24fb-f9f4-45b2-b7bc-0533216932ea",
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"metadata": {},
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"outputs": [],
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"source": [
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"import vip_client\n",
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"import importlib\n",
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"from vip_client import VipGirder\n",
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"#importlib.reload(client)\n",
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"vip_client.__path__"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "8a60aa4a-ba39-4c9b-b749-a79b8f6d21e7",
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"metadata": {},
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"outputs": [],
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"source": [
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"import inspect\n",
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"inspect.getfile(VipGirder)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "fc36a278-550b-43f5-800d-3500612ba12d",
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"metadata": {},
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"outputs": [],
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"source": [
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"VipGirder.init()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "0a7c7ee2-2656-4585-9930-895e68cc90ac",
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"metadata": {},
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"outputs": [],
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"source": [
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"session.display()"
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]
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},
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{
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"cell_type": "markdown",
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"id": "97d7cf93-2ab0-4d07-81b2-654b38480f9a",
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"metadata": {},
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"source": [
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"# Output on girder (default)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "cdaa53b9-eaec-44d7-a342-7b41191fcb4a",
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"metadata": {},
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"outputs": [],
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"source": [
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"pipeline_id=\"BasicGrepLocal/0.2\"\n",
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"VipGirder.show_pipeline(pipeline_id)\n",
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"session_name=\"test_girder_girder\"\n",
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"output_dir=\"/collection/ReproVIPSpectro/test/vip_outputs\"\n",
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"input_settings={\n",
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" \"file\":\"/collection/ReproVIPSpectro/test/test_for_grep.txt\",\n",
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" \"int\":5,\n",
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" \"text\":\"grep\"\n",
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"}\n",
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"session = VipGirder(session_name=session_name, pipeline_id=pipeline_id, input_settings=input_settings, output_dir=output_dir)"
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]
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},
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{
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"cell_type": "markdown",
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"id": "1aec7d5d-05e1-4baf-af30-2e9b42e791f1",
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"metadata": {},
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"source": [
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"# Output on VIP"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "25da2f62-e044-4ffd-855f-74881ad5d770",
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"metadata": {},
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"outputs": [],
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"source": [
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"pipeline_id=\"BasicGrepLocal/0.2\"\n",
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"VipGirder.show_pipeline(pipeline_id)\n",
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"session_name=\"test_girder_vip\"\n",
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"input_settings={\n",
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" \"file\":\"/collection/ReproVIPSpectro/test/test_for_grep.txt\",\n",
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" \"int\":5,\n",
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" \"text\":\"grep\"\n",
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"}\n",
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"session = VipGirder(session_name=session_name, pipeline_id=pipeline_id, input_settings=input_settings, output_location=\"vip\")"
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]
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},
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{
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"cell_type": "markdown",
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"id": "7c726378-93b0-443d-9531-89b42735142d",
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"metadata": {},
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"source": [
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"# Output in local"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "bff17ffe-bebc-419d-b68d-ed3b0d2f4cf7",
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"metadata": {},
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"outputs": [],
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"source": [
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"pipeline_id=\"BasicGrepLocal/0.2\"\n",
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"VipGirder.show_pipeline(pipeline_id)\n",
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"session_name=\"test_girder_local\"\n",
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"input_settings={\n",
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" \"file\":\"/collection/ReproVIPSpectro/test/test_for_grep.txt\",\n",
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" \"int\":5,\n",
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" \"text\":\"grep\"\n",
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"}\n",
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"session = VipGirder(session_name=session_name, pipeline_id=pipeline_id, input_settings=input_settings, output_location=\"local\")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "d47ee6da-1178-4646-b9f6-a71711dcac01",
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"metadata": {},
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"outputs": [],
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"source": [
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"session.launch_pipeline()\n",
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"session.display()\n",
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"session.monitor_workflows()\n",
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"session.display()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "81f8dc9e-22ab-4603-ae3b-28d83f0a2615",
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"metadata": {},
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"outputs": [],
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"source": [
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"session.download_outputs()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "d54e5e44-7350-4e79-a8aa-0a8a58c60fac",
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"metadata": {},
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"outputs": [],
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"source": [
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"session.finish()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "39544d26-4881-4562-9d65-209c61836b33",
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"metadata": {},
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"outputs": [],
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"source": []
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3 (ipykernel)",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.13.3"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 5
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}

‎src/vip_client/__init__.py‎

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"""
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# Informations
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__version__ = "0.1.8"
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__version__ = "0.1.9-a1"
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__license__ = "CECILL-B"
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from vip_client.classes import VipSession
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from vip_client.classes import VipGirder

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