Merge pull request #25 from eywalker/main

Rename orcabridge to orcapod

Author: brian-arnold

README.md

@@ -79,7 +79,7 @@ def demonstrate_redis_mocking():
             MockConnectionError,
         ),
     ):
-        from orcabridge.hashing.string_cachers import RedisCacher
+        from orcapod.hashing.string_cachers import RedisCacher
 
         # Create a mock Redis instance
         mock_redis = MockRedis()

misc/demo_redis_mocking.py

@@ -20,7 +20,7 @@
                   "source": [
                         "Below I define few critical concepts for Orcapod.\n",
                         "\n",
-                        "* `Data` -- In Orcapod, smallest unit of `data` is a single `file`. Unlike many other computation pipeline system, Orcapod pipeline in principle does **not** operate on `data` that's not a file. In other words, `Oracpod` pipeline will **not** pass a data in memory from one node to another. Consequently, all operations and processing in Orcapod pipeline revolves around `file` (NOTE: this is a particularly strong/restrictive version of Oracpod pipeline. We may consider extending data to things like environment variable and command line arguments)\n",
+                        "* `Data` -- In Orcapod, the smallest unit of `data` is a single `file`. Unlike many other computation pipeline system, Orcapod pipeline in principle does **not** operate on `data` that's not a file. In other words, `Oracpod` pipeline will **not** pass a data in memory from one node to another. Consequently, all operations and processing in Orcapod pipeline revolves around `file` (NOTE: this is a particularly strong/restrictive version of Oracpod pipeline. We may consider extending data to things like environment variable and command line arguments)\n",
                         "* `Pathset` -- a unit of data that can be passed into a pod. A `pathset` consists of a file, a directory, or a collection of one or more file and directories.\n",
                         "* `Packet` -- a single concrete instance of key-value pair, mapping packet key to a single `pathset`.\n",
                         "* `Stream` -- a series of one or more `packets` flowing from a `data producer` to a `data consumer`. In a directed acyclic graph represneing an Orcapod `pipeline`, a `stream` corresponds to a *directed* edge connecting from a data source into a `data consumer` (e.g., `pod`)\n",

…s/01_orcabridge_core_concepts copy.ipynb …ooks/01_orcapod_core_concepts copy.ipynbnotebooks/01_orcabridge_core_concepts copy.ipynb renamed to notebooks/01_orcapod_core_concepts copy.ipynb notebooks/01_orcabridge_core_concepts copy.ipynb renamed to notebooks/01_orcapod_core_concepts copy.ipynb

@@ -3,8 +3,8 @@ requires = ["setuptools>=64", "wheel", "setuptools-scm>=8"]
 build-backend = "setuptools.build_meta"
 
 [project]
-name = "orcabridge"
-description = "Function-based Oracapod Pipeline implementation in Python"
+name = "orcapod"
+description = "simple yet powerful pipeline library for building reproducible scientific pipeline"
 dynamic = ["version"]
 dependencies = [
     "xxhash",
@@ -27,7 +27,7 @@ classifiers = [
 ]
 
 [project.urls]
-Homepage = "https://github.com/walkerlab/orcabridge"
+Homepage = "https://github.com/walkerlab/orcapod-python"
 
 [project.optional-dependencies]
 redis = ["redis>=6.2.0"]
@@ -37,7 +37,7 @@ redis = ["redis>=6.2.0"]
 where = ["src"]
 
 [tool.setuptools_scm]
-version_file = "src/orcabridge/_version.py"
+version_file = "src/orcapod/_version.py"
 
 [dependency-groups]
 dev = [