🚨 Targets workflow failed - Review needed#16
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github-actions[bot] wants to merge 68 commits intomainfrom
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🚨 Targets workflow failed - Review needed#16github-actions[bot] wants to merge 68 commits intomainfrom
github-actions[bot] wants to merge 68 commits intomainfrom
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Merge branch 'main' into dev-adam # Conflicts: # R/get_climate_chelsa.R # _targets.R # _targets/meta/meta
Merge branch 'main' into dev-adam # Conflicts: # .gitignore
Merge branch 'main' into dev-adam # Conflicts: # .github/decrypt_secret.sh # .gitignore # R/get_climate_chelsa.R # README_files/figure-gfm/unnamed-chunk-3-1.png # _targets.R
- started working through functions auto summary below: Add functions to download and process NDVI and NDWI data from MODIS and VIIRS - Implemented `get_release_ndvi_dates_modis` to download MODIS NDVI dates and convert to UNIX format. - Created `get_release_ndvi_dates_viirs` for downloading VIIRS NDVI data with appropriate quality checks. - Added `get_release_ndwi_modis` to download the most recent MODIS NDWI layer. - Introduced helper functions for date conversion and quality assessment. - Ensured proper directory management and error handling during downloads. - Updated documentation for clarity and usage instructions.
… and VIIRS - Implemented `get_release_ndvi_dates_modis` to download MODIS NDVI dates, including functions for date conversion and error handling. - Created `get_release_ndvi_dates_viirs` for downloading VIIRS NDVI dates with appropriate quality checks. - Developed `get_release_ndwi_modis` to fetch the most recent MODIS NDWI layer, including domain formatting and raster processing. - Added error handling and release management for GitHub uploads across all functions. - Ensured compatibility with existing data structures and improved documentation for clarity.
…emma_envdata into dev-adam-appeears
… national boundary function
…ing climate data download URLs for improved accuracy and reliability.
…and clean up unused steps in targets pipeline
…eps in the GitHub Actions workflow
…add local testing for actions
…and maintain consistency.
…parameters for clarity.
…et in _targets.R for clarity.
Expanded .gitignore to include more R, RStudio, targets, data, secrets, and output file patterns. Cleaned up and reorganized entries for clarity and removed merge conflict markers.
Introduces new shapefiles (remnants_shp, capenature_fires_shp), raster and NetCDF outputs (domain.tif, vegmap.tif, domain.nc, vegmap.nc), and updates or adds several functions and objects related to spatial data processing. Also updates metadata for country and domain layers, and removes the process_release_biome_raster function.
…line, update country and domain functions to write GeoParquet, and refactor elevation data retrieval with AppEEARS
…ata handling and NetCDF output
…quests, and issues
…ubdirectory and return correct path; update elevation resampling method to average.
…emnants processing, and improve NetCDF variable definitions and metadata handling.
…ndicator description, add comprehensive CRS attributes, and implement run mode for GitHub Actions.
…vegmap, improve elevation retrieval with AppEEARS, and ensure directory structure for temporary files.
… releases; update .gitignore for new data directories
- Update output path for domain bounding box to "data/target_outputs/domain_bbox.parquet" and ensure directory creation. - Convert bounding box to a simple data frame with WKT geometry before writing as parquet. - Improve GitHub release upload process with credential handling and retry logic for uploads. - Adjust cue mode for domain bounding box task based on run mode.
…ode determination
…hing - Added new helper functions in `R/modis_vi_monthly_helpers.R` for month management and aggregation. - Refactored `R/get_modis_vi.R` to support single month submissions and downloads, while maintaining backward compatibility. - Updated `_targets.R` to replace monolithic tasks with dynamic branching for monthly downloads. - Created `R/MODIS_VI_MONTHLY_README.md` for user documentation on the new implementation. - Introduced `IMPLEMENTATION_SUMMARY.txt` detailing the changes, technical details, and next steps for users. - Enhanced parallelization potential and resilience in the downloading process.
- Implemented `submit_modis_vi` function to submit monthly MODIS VI requests via AppEEARS. - Added `download_modis_vi` function to download and process MODIS VI data into NetCDF format. - Removed deprecated `get_release_kndvi_modis` function for downloading KNDVI layers. - Introduced `hexgrid` function to create hexagonal grids for spatial analysis. - Added new QGIS project file for EMMA data visualization.
- Updated renv version from 0.14.0 to 1.1.7 in activate.R. - Added support for project directory retrieval via environment variable. - Introduced startup diagnostics for performance monitoring during activation. - Enhanced autoloader configuration with additional environment variable checks. - Improved error handling and user feedback during renv installation and loading. - Added functions for ansifying output and managing download headers. - Implemented cache management for renv installations and added support for local tarballs. - Refactored repository handling to support lockfile repositories and custom headers. - Updated JSON reading functions for better error handling and compatibility. - Added new utility functions for managing project paths and user directories.
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@github-copilot review |
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@github-copilot-agent Please analyze the error log and create fixes for this targets pipeline failure |
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Workflow Failure
The targets pipeline failed. GitHub Copilot will review this PR.
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