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gonlairo and others added 30 commits February 17, 2025 21:16
* Add multiobjective solver and regularized training

* Add example for multiobjective training

* Add jacobian regularizer and SAM

* update license headers

* add api draft for multiobjective training

* add all necessary modules to run the complete xcebra pipeline

* add notebooks to reproduce xcebra pipeline

* add first working notebook

* add notebook with hybrid learning

* add notebook with creation of synthetic data

* add notebook with hybrid training

* add plot with R2 for different parts of the embedding

* add new API

* update api wrapper with more checks and messages

* add tests and notebook with new api

* merge xcebra into attribution

* separate xcebra dataset from cebra

* some minor refactoring of cebra dataset

* separate xcebra loader from cebra

* remove xcebra distributions from cebra

* minor refactoring with distributions

* separate xcebra criterions from cebra

* minor refactoring on criterion

* separate xcebra models/criterions/layers from cebra

* refactoring multiobjective

* more refactoring...

* separate xcebra solvers from cebra

* more refactoring

* move xcebra to its own package

* move more files into xcebra package

* more files and remove changes with the registry

* remove unncessary import

* add folder structure

* move back distributions

* add missing init

* remove wrong init

* make loader and dataset run with new imports

* making it run!

* make attribution run

* Run pre-commit

* move xcebra repo one level up

* update gitignore and add __init__ from data

* add init to distributions

* add correct init for attribution pacakge

* add correct init for model package

* fix remaining imports

* fix tests

* add examples back to xcebra repo

* update imports from graphs_xcebra

* add setup.py to create a package

* update imports of graph_xcebra

* update notebooks

* Formatting code for submission

Co-authored-by: Rodrigo Gonzalez <gonlairo@gmail.com>

* move test into xcebra

* Add README

* move distributions back to main package

* clean up examples

* adapt tests

* Add LICENSE

* add train/eval notebook again

* add notebook with clean results

* rm synthetic data

* change name from xcebra to regcl

* change names of modules and adapt imports

* change name from graphs_xcebra to synthetic_data

* Integrate into CEBRA

* Fix remaining imports and make notebook runnable

* Add dependencies, add version flag

* Remove synthetic data files

* reset dockerfile, move vmf

* apply pre-commit

* Update notice

* add some docstrings

* Apply license headers

* add new scd notebook

* add notebook with scd

---------

Co-authored-by: Steffen Schneider <stes@hey.com>
* bump version

* update dockerfile

* fix progress bar

* remove outdated test

* rename models
@cla-bot cla-bot bot added the CLA signed label Apr 22, 2025
@MMathisLab MMathisLab changed the title Feature/enhanced docstrings more xCEBRA docstrings Apr 22, 2025
@MMathisLab MMathisLab closed this Apr 23, 2025
@MMathisLab MMathisLab reopened this Apr 23, 2025
@MMathisLab MMathisLab closed this Apr 23, 2025
@MMathisLab MMathisLab deleted the feature/enhanced-docstrings branch April 23, 2025 07:55
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4 participants