Add the 'time' action#722

Merged

drroe merged 13 commits intoAmber-MD:masterfrom

drroe:timeaction

May 20, 2019

Commits on May 20, 2019

DRR - Cpptraj: Initial incarnation of the time action.
Daniel R. Roe
committed
DRR - Cpptraj: Enable time command
Daniel R. Roe
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DRR - Cpptraj: Add basic time addition test
Daniel R. Roe
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DRR - Cpptraj: Clean up error message. Return MODIFY_TOPOLOGY even though we are not really modifying the topology so that if 'time' is used with 'crdaction' the warning about COORDS data sets not …
Daniel R. Roe
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DRR - Cpptraj: Add time to trajectory test
Daniel R. Roe
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DRR - Cpptraj: Modify time info test
Daniel R. Roe
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DRR - Cpptraj: Change 'notime' to 'remove' - just makes more sense.
Daniel R. Roe
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DRR - Cpptraj: Add test for removing time info
Daniel R. Roe
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DRR - Cpptraj: Add test to makefile
Daniel R. Roe
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DRR - Cpptraj: Revision bump for adding 'time' action
Daniel R. Roe
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DRR - Cpptraj: Update manual.
Daniel R. Roe
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DRR - Cpptraj: Want TrajoutNum(), not incoming frameNum.
Daniel R. Roe
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DRR - Cpptraj: Test that writes netcdf in parallel requires parallel netcdf
Daniel R. Roe
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