Make configure script able to download and install external libraries. Fix 'dat' install.#883

Merged

drroe merged 52 commits intoAmber-MD:masterfrom

drroe:netcdf-script

Mar 4, 2021

Commits on Feb 28, 2021

Start adding support for automatically getting and building netcdf
drroe
committed
Fix extra space, make executable
Daniel R. Roe
committed
Download and build netcdf automatically
Daniel R. Roe
committed
Fix netcdf specified build failure message
Daniel R. Roe
committed

Commits on Mar 1, 2021

Move all logic for determining if and how netcdf will be built to configure.
Daniel R. Roe
committed
Hide some debug info. Ensure clean is run before make
Daniel R. Roe
committed

Commits on Mar 2, 2021

Make script more general so it can be potentially used for other libraries
Daniel R. Roe
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Rename to make more general
Daniel R. Roe
committed
Add messages about downloading and unpacking
Daniel R. Roe
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Move question to get_library.sh
Daniel R. Roe
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Change indents in get_library. Simplify logic for checking for bundled netcdf.
Daniel R. Roe
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Try to determine SRCDIR automatically if not specified.
Daniel R. Roe
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Start trying to automatically build bzip2
Daniel R. Roe
committed
Try to handle case where library has a Makefile but not configure
Daniel R. Roe
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Improve error message
Daniel R. Roe
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Add support for getting zlib. Reorder CC and CFLAGS position when invoking configure.
Daniel R. Roe
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Fix 'error: identifier "_LIB_VERSION_TYPE" is undefined' with intel compilers
Daniel R. Roe
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Start adding code for math library.
Daniel R. Roe
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Add some internal documentation
drroe
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Consolidate error message code for TestProgram silent. Have DetermineFlink return with a status instead of exit on error.
drroe
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Skip asking user about building if already built once before
Daniel R. Roe
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Rebuild checks for zlib and bzlib
Daniel R. Roe
committed

Commits on Mar 3, 2021

Add install of openblas
Daniel R. Roe
committed
Set up make command if not already set
Daniel R. Roe
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Fix up formatting
Daniel R. Roe
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Pass in FC and FFLAGS
Daniel R. Roe
committed
Fix syntax error
Daniel R. Roe
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Start generalizing for different BLAS external builds. Pass FC but not FFLAGS since they might not be appropriate for F77 style code
Daniel R. Roe
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Add code for building vanilla lapack/blas
Daniel R. Roe
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Add uninstall_lib target
Daniel R. Roe
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Add concept of a cpptraj include directory
Daniel R. Roe
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Add uninstall_inc target
Daniel R. Roe
committed
Add --buildlibs option
Daniel R. Roe
committed
Fix typo in variable
Daniel R. Roe
committed
Add note
Daniel R. Roe
committed
Fix issues with SRCDIR
Daniel R. Roe
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Add pnetcdf
Daniel R. Roe
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Disable pnetcdf interfaces that cpptraj does not use
Daniel R. Roe
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Add build of fftw
Daniel R. Roe
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Disable fortran interface for fftw. Only enable pnetcdf when mpi is specified
Daniel R. Roe
committed
Add message that compiling may be time-consuming
Daniel R. Roe
committed
Add small blurb about --buildlibs
Daniel R. Roe
committed

Commits on Mar 4, 2021