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Annatu14/README.md

Usage and more information

how to run your setup.sh script

open your terminal and add the following prompts in the command line(press enter to execute a prompt)

nano setup.sh

once this is executed, a text editor is opened where these instructions will be inputed.

we will make a directory to hold the data, download the data

and uncompress it

echo "making directory" mkdir HCEPDB cd HCEPDB

echo "making README" echo "This directory holds a copy of the HCE PDB" > README.txt

echo "downloading data" curl -O http://faculty.washington.edu/dacb/HCEPDB_moldata.zip

echo "uncompressing zip" unzip -x HCEPDB_moldata.zip

echo "here are the first two lines of the csv file" head -2 HCEPDB_moldata.csv

echo "removing zip file" rm HCEPDB_moldata.zip

once this is done, press "control +X" on your keyboard to exit

you will be prompted to "Save modified buffer?", press 'y' on your keyboard to save it

click enter to go back to your command line

start to type this commands

cat setup.sh

this should print out the same instructions in your setup.sh

sh setup.sh

this will execute the commands in your setup.sh

you should also be able to see the downloading proceess after which you see the rest of the commands being executed

% Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 168M 100 168M 0 0 20.6M 0 0:00:08 0:00:08 --:--:-- 20.1M

this is how to run the setup.sh

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