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Need to reprocess RLRanges / RLSeq HTML and reupload

bugSomething isn't workingSomething isn't working

Status: Open.

#22 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Jul 1, 2022

Workaround for plant genomes

enhancementNew feature or requestNew feature or request

Status: Open.

#21 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Dec 28, 2021

Keep summit information when creating rl regions

v1

Status: Open.

#18 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Oct 19, 2021

Need to modify genome browser session such that "Mean" is used

Status: Open.

#17 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Oct 13, 2021

Need to obtain coverage tracks with library size normalization

v1

Status: Open.

#16 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Oct 12, 2021

Mistake in data entry of Tissue for HT1080 cell lines

v1

Status: Open.

#15 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Oct 12, 2021

Need also to find variable R-loop regions (should allow as low as 5% region cutoff)

analysis neededThis issue requires an analysis (e.g., Identification of gene expression changes with treatment)This issue requires an analysis (e.g., Identification of gene expression changes with treatment)

v2

Status: Open.

#14 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Oct 8, 2021

Add in new data (Late 2021 update)

Status: Open.

#13 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Oct 3, 2021

num_total_peaks and num_tested_peaks are backwards in feat_enrich_samples

Status: Open.

#10 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Sep 30, 2021

Need to add in the RLBPs scripts (remove from .gitignore)

Status: Open.

#9 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Sep 30, 2021

Need intergenic regions in <code>Transcript_Features</code> database

Status: Open.

#8 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Sep 30, 2021

DBs to remove

Status: Open.

#6 In Bishop-Laboratory/RLBase-data;

· millerh1 opened on Sep 19, 2021