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[BI-2046] Overwrite observations happening without reference to ObsUnitID #332

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Merged
dmeidlin merged 40 commits into from
Apr 5, 2024
Merged

[BI-2046] Overwrite observations happening without reference to ObsUnitID #332

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5bda44a
[BI-2046] add validator for exp import on obsUnitID for existing studies
dmeidlin Feb 13, 2024
ba78917
[BI-2046] update ref to obsolete brapi-client field
dmeidlin Feb 14, 2024
ef4fea6
[BI-2046] fix typos and obsolete refs
dmeidlin Feb 15, 2024
b783632
[BI-2046] set pendingObsUnitByOUId
dmeidlin Feb 26, 2024
9917eb5
[BI-2046] refactor initializing OUs
dmeidlin Feb 27, 2024
9db276a
[BI-2046] get trial pio from reference obs unit
dmeidlin Feb 28, 2024
fd40f55
[BI-2046] update fetchOrCreate methods
dmeidlin Feb 29, 2024
87cc4bd
[BI-2046] initialize brapi maps when OUIds supplied
dmeidlin Mar 4, 2024
8d3c29a
[BI-2046] map trials and studies to OU Id
dmeidlin Mar 4, 2024
6cb0251
[BI-2046] map locations by OU id
dmeidlin Mar 4, 2024
7b3eb16
[BI-2046] initialize dataset maps for existing observation units
dmeidlin Mar 5, 2024
346b629
[BI-2046] refactor initialization of dataset map
dmeidlin Mar 5, 2024
18ff6e2
[BI-2046] map obsVarDataset by OU id
dmeidlin Mar 5, 2024
aa397ce
[BI-2046] fix NPEs
dmeidlin Mar 5, 2024
9c33f31
[BI-2046] map germplasm by observation unit id
dmeidlin Mar 5, 2024
e9ef80d
[BI-2046] refaactor
dmeidlin Mar 5, 2024
74eeeb5
[BI-2046] prepare for validation using reference OU ids
dmeidlin Mar 6, 2024
eaeb423
[BI-2046] validate observations for reference observation units
dmeidlin Mar 7, 2024
bd480f2
[BI-2046] add test for updating observations referenced by OU id
dmeidlin Mar 7, 2024
9704765
[BI-2046] fix studyPIO reference when creating new observation PIO
dmeidlin Mar 11, 2024
885ef53
[BI-2046] correct observation hash when OU id referenced
dmeidlin Mar 15, 2024
a39c505
[BI-2046] set preview state for existing empty datasets
dmeidlin Mar 27, 2024
3e04828
fix test
dmeidlin Mar 27, 2024
17b08e3
[BI-2046] remove unused helper method
dmeidlin Mar 28, 2024
55a0f78
[BI-2046] refactor
dmeidlin Mar 28, 2024
cc68f28
[BI-2046] document exp processhelper method
dmeidlin Mar 28, 2024
068f046
[BI-2046] document exp process helper method
dmeidlin Mar 28, 2024
e39a02d
[BI-2046] document exp process helper method
dmeidlin Mar 28, 2024
a42b98f
[BI-2046] document exp process helper method
dmeidlin Mar 28, 2024
b3f819c
[BI-2046] document exp process helper method
dmeidlin Mar 28, 2024
2e6161f
[BI-2046] delete unused helper method
dmeidlin Mar 28, 2024
a3f16c2
[BI-2046] document exp process helper method
dmeidlin Mar 28, 2024
aab081e
[BI-2046] delete unused helper method
dmeidlin Mar 28, 2024
b3396c8
[BI-2046] delete unused helper method
dmeidlin Mar 28, 2024
ac8072b
[BI-2046] document exp process helper method
dmeidlin Mar 28, 2024
4a32877
[BI-2046] document exp process helper method
dmeidlin Mar 28, 2024
b98da08
[BI-2046] clean up
dmeidlin Mar 28, 2024
be76c12
[BI-2046] Update expected error message in test
dmeidlin Apr 1, 2024
7ea6dc4
[BI-2046] remove redundant part of error message
dmeidlin Apr 3, 2024
8bc7bc5
[BI-2046] add comment
dmeidlin Apr 3, 2024
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5 changes: 1 addition & 4 deletions src/main/java/org/breedinginsight/brapps/importer/services/FileMappingUtil.java
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Original file line number Diff line number Diff line change
Expand Up @@ -27,10 +27,7 @@

import javax.inject.Inject;
import javax.inject.Singleton;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.*;

@Singleton
public class FileMappingUtil {
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