[BI-2017] Change Germplasm Upload to unify with sample submission

[davedrp]

Description

BI-2017 Change Germplasm Upload to unify with sample submission

Change Germplasm Template column from "Name" to "Germplasm Name"

Dependencies

bi-api: feature/BI-2017 branch

Testing

1. Download Germplasm Import Template.
2. Use Template format to import Germplasm.

Checklist:

• I have performed a self-review of my own code
• I have tested my code and ensured it meets the acceptance criteria of the story
• I have create/modified unit tests to cover this change
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to documentation
• I have run TAF: <link to TAF run>

[nickpalladino]

whoops missed the backend PR

[dmeidlin]

The name changes appear in the germplasm table and import template. When I import
bi_germplasm_import_template_v9.xls there's a runtime error that crashes bi-api:
ERROR i.m.h.s.netty.RoutingInBoundHandler - Unexpected error occurred: it/unimi/dsi/fastutil/ints/IntIterable java.lang.NoClassDefFoundError: it/unimi/dsi/fastutil/ints/IntIterable at java.base/java.lang.ClassLoader.defineClass1(Native Method) at java.base/java.lang.ClassLoader.defineClass(ClassLoader.java:1017) at java.base/java.security.SecureClassLoader.defineClass(SecureClassLoader.java:151) at java.base/jdk.internal.loader.BuiltinClassLoader.defineClass(BuiltinClassLoader.java:821) at java.base/jdk.internal.loader.BuiltinClassLoader.findClassOnClassPathOrNull(BuiltinClassLoader.java:719) at java.base/jdk.internal.loader.BuiltinClassLoader.loadClassOrNull(BuiltinClassLoader.java:642) at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:600) at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178) at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522) at org.breedinginsight.utilities.FileUtil.parseTableFromJson(FileUtil.java:195) at org.breedinginsight.brapi.v2.dao.impl.ImportMappingDAOImpl.parseBrAPIImportMapping(ImportMappingDAOImpl.java:134) at org.breedinginsight.brapi.v2.dao.impl.ImportMappingDAOImpl.getSystemMappingByName(ImportMappingDAOImpl.java:124) at org.breedinginsight.brapps.importer.services.FileImportService.getSystemMappingByName(FileImportService.java:559) at org.breedinginsight.brapps.importer.controllers.ImportController.getSystemMappings(ImportController.java:200) at org.breedinginsight.brapps.importer.controllers.$ImportControllerDefinition$$exec6.invokeInternal(Unknown Source) at io.micronaut.context.AbstractExecutableMethod.invoke(AbstractExecutableMethod.java:151) at io.micronaut.context.DefaultBeanContext$4.invoke(DefaultBeanContext.java:482) at io.micronaut.web.router.AbstractRouteMatch.execute(AbstractRouteMatch.java:303) at io.micronaut.web.router.RouteMatch.execute(RouteMatch.java:121) at io.micronaut.http.server.netty.RoutingInBoundHandler.emitRouteResponse(RoutingInBoundHandler.java:1502) at io.micronaut.http.server.netty.RoutingInBoundHandler.access$2100(RoutingInBoundHandler.java:151) at io.micronaut.http.server.netty.RoutingInBoundHandler$6$1.request(RoutingInBoundHandler.java:1469) at io.reactivex.internal.operators.flowable.FlowableSwitchMap$SwitchMapInnerSubscriber.onSubscribe(FlowableSwitchMap.java:379) at io.micronaut.http.server.netty.RoutingInBoundHandler$6.doSubscribe(RoutingInBoundHandler.java:1457) at io.micronaut.http.server.netty.RoutingInBoundHandler$6.lambda$subscribe$0(RoutingInBoundHandler.java:1451) at io.micronaut.scheduling.instrument.InvocationInstrumenterWrappedRunnable.run(InvocationInstrumenterWrappedRunnable.java:47) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) at java.base/java.lang.Thread.run(Thread.java:830) Caused by: java.lang.ClassNotFoundException: it.unimi.dsi.fastutil.ints.IntIterable at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:602) at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178) at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)

[mlm483]

@davedrp could you please merge this feature branch into release/0.9 instead of develop? We have time to get this and BI-1680 into v0.9, and this PR needs to be merged before BI-1680.