Dependabot updates

docker/Dockerfile.local

@@ -0,0 +1,34 @@
+FROM ubuntu:18.04
+
+RUN echo v0.0.0
+RUN apt update
+RUN apt install -y less vim
+RUN DEBIAN_FRONTEND=noninteractive apt install -y \
+    build-essential \
+    ca-certificates \
+    coreutils \
+    curl \
+    environment-modules \
+    gfortran \
+    git \
+    gpg \
+    lsb-release \
+    # pkg-config \
+    # python3 installs python 3.6.9
+    python3 \
+    python3-distutils \
+    unzip \
+    zip
+
+RUN git clone -c feature.manyFiles=true https://github.com/spack/spack.git
+RUN git clone https://github.com/mochi-hpc/mochi-spack-packages.git
+COPY docker/install_spack_requirements.sh /install_spack_requirements.sh
+RUN bash /install_spack_requirements.sh
+
+COPY requirements.large.txt /requirements.large.txt
+COPY docker/install_python_requirements.large.sh /install_python_requirements.large.sh
+RUN bash /install_python_requirements.large.sh
+
+COPY requirements.txt /requirements.txt
+COPY docker/install_python_requirements.sh /install_python_requirements.sh
+RUN bash /install_python_requirements.sh

docker/install_python_requirements.large.sh

@@ -0,0 +1,6 @@
+#!/usr/bin/env bash
+set -x
+source /spack/share/spack/setup-env.sh
+cd /opt/cv2
+spack env activate .
+python3.8 -m pip install -r /requirements.large.txt

docker/install_python_requirements.sh

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+#!/usr/bin/env bash
+set -x
+source /spack/share/spack/setup-env.sh
+cd /opt/cv2
+spack env activate .
+python3.8 -m pip install -r /requirements.txt
+python3.8 -m pip install "pip==24" pkgconfig setuptools wheel --upgrade
+python3.8 -m pip install git+https://github.com/mochi-hpc/py-mochi-sonata.git@v0.1.2

docker/install_spack_requirements.sh

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+#!/usr/bin/env bash
+set -x
+source /spack/share/spack/setup-env.sh
+spack repo add mochi-spack-packages
+mkdir -p /opt/cv2
+cd /opt/cv2
+spack env create --with-view view --dir .
+spack env activate .
+spack -e . add mochi-margo
+spack -e . add mochi-sonata
+spack -e . add mpich
+spack -e . add "python@3.8.18"
+spack -e . add py-mochi-margo # requires python3.11?
+spack -e . add py-pip
+# spack -e . add py-setuptools
+spack -e . concretize
+spack -e . install
+
+# python3.11 -m pip install setuptools
+# spack -e . add py-mochi-sonata
+# spack -e . concretize
+# spack -e . install