This repository includes image processing workflows, simulation workflows, codebook generating scripts, and figure generating notebooks used in our preprint, Untangling overlapping barcodes in spatial genomics data.
Also checkout our git repositores for the packages implementing algorithms described in the preprint for use in these workflows:
Experimental data processing workflows included in this repository are written to take raw data as inputs. As raw experimental image data is too large for posting it to be practical, we make available alternative versions of our data processing workflows with preprocessed data of managable size:
- Cross-channel Reed-Solomon encoded experiment
- 2019 SeqFISH+ (Coming soon)