TB analysis has code to analyse translation buffering in human and mouse. This requires the processed RNA and ribosome occupancy read counts in addition to the calculated TE counts.
It has code to process the RNA and ribosome profiling reads from human obtained from RiboBase to calculate the translation efficiency (TE) at the sample level.
It has code to process the RNA and ribosome profiling reads from mouse obtained from RiboBase to calculate the translation efficiency (TE) at the sample level.