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Merged
rodvrees merged 2 commits into from
Sep 14, 2024
Merged

Deeplc/tensorflow compatibility #5

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da9e4f5
Replace models, change dependencies
rodvrees Sep 14, 2024
495355b
Bump version
rodvrees Sep 14, 2024
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2 changes: 1 addition & 1 deletion im2deep/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
"""IM2Deep: Deep learning framework for peptide collisional cross section prediction."""

__version__ = "0.1.9"
__version__ = "0.2.0"
2 changes: 1 addition & 1 deletion im2deep/im2deep.py
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Expand Up @@ -31,7 +31,7 @@ def predict_ccs(
if model_name == "tims":
path_model = Path(__file__).parent / "models" / "TIMS"

path_model_list = list(path_model.glob("*.hdf5"))
path_model_list = list(path_model.glob("*.keras"))
if use_single_model:
LOGGER.debug("Using model {}".format(path_model_list[2]))
path_model_list = [path_model_list[2]]
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Binary file added im2deep/models/TIMS/full_hc_peprec_CCS_v4_8c22d89667368f2f02ad996469ba157e.keras
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Binary file renamed ..._v4_cb975cfdd4105f97efa0b3afffe075cc.hdf5 → ...v4_cb975cfdd4105f97efa0b3afffe075cc.keras
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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -20,7 +20,7 @@ dynamic = ["version"]
requires-python = ">=3.8"
dependencies = [
"click",
"deeplc==2.2.38",
"deeplc",
"psm_utils",
"pandas",
"numpy",
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