Try trim remainder of the polyT

[ChangqingW]

Try trimming the remainder of the polyT with seq.find_first_not_of('T', result.endLocations[0]);
Replaced pointers with const reference.

curl -sL https://raw.githubusercontent.com/mritchielab/FLAMES/devel/inst/extdata/fastq/musc_rps24.fastq.gz | zcat > musc_rps24.fastq
curl -sL https://raw.githubusercontent.com/mritchielab/FLAMES/devel/inst/extdata/bc_allow.tsv.gz | zcat > bc_allow.tsv
./flexiplex -x CTACACGACGCTCTTCCGATCT -b '????????????????' -u '????????????' -x TTTTTTTTT -e 2 -f 8 -k bc_allow.tsv musc_rps24.fastq > new.fq
vim -d <(sed -n '2~4p' old.fq) <(sed -n '2~4p' new.fq)