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enhance EasyBuild hooks to fix installation of MetaBAT in EESSI #203

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Merged
ocaisa merged 2 commits into from
Dec 14, 2022
Merged

enhance EasyBuild hooks to fix installation of MetaBAT in EESSI #203

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85e2ed6
enhance EasyBuild hooks to fix installation of MetaBAT in EESSI
boegel Nov 12, 2022
d48fbdf
remove debug print statements in eb_hooks.py
boegel Dec 14, 2022
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17 changes: 17 additions & 0 deletions eb_hooks.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
# Hooks to customize how EasyBuild installs software in EESSI
# see https://docs.easybuild.io/en/latest/Hooks.html
import os
import re

from easybuild.tools.build_log import EasyBuildError, print_msg
from easybuild.tools.config import build_option, update_build_option
Expand Down Expand Up @@ -130,6 +131,20 @@ def pre_configure_hook(self, *args, **kwargs):
PRE_CONFIGURE_HOOKS[self.name](self, *args, **kwargs)


def metabat_preconfigure(self, *args, **kwargs):
"""
Pre-configure hook for MetaBAT:
- take into account that zlib is a filtered dependency,
and that there's no libz.a in the EESSI compat layer
"""
if self.name == 'MetaBAT':
configopts = self.cfg['configopts']
regex = re.compile(r"\$EBROOTZLIB/lib/libz.a")
self.cfg['configopts'] = regex.sub('$EPREFIX/usr/lib64/libz.so', configopts)
else:
raise EasyBuildError("MetaBAT-specific hook triggered for non-MetaBAT easyconfig?!")


def wrf_preconfigure(self, *args, **kwargs):
"""
Pre-configure hook for WRF:
Expand All @@ -144,12 +159,14 @@ def wrf_preconfigure(self, *args, **kwargs):
else:
raise EasyBuildError("WRF-specific hook triggered for non-WRF easyconfig?!")


PARSE_HOOKS = {
'CGAL': cgal_toolchainopts_precise,
'fontconfig': fontconfig_add_fonts,
'UCX': ucx_eprefix,
}

PRE_CONFIGURE_HOOKS = {
'MetaBAT': metabat_preconfigure,
'WRF': wrf_preconfigure,
}