{2023.06}[foss/2022b] R v4.2.2 by TopRichard · Pull Request #452 · EESSI/software-layer

TopRichard · 2024-01-15T10:45:20Z

Trying to add R/4.2.2 to software.eessi.io/2023.06.

Missing modules:

63 out of 137 required modules missing:

* libxslt/1.1.37-GCCcore-12.2.0 (libxslt-1.1.37-GCCcore-12.2.0.eb)
* nettle/3.8.1-GCCcore-12.2.0 (nettle-3.8.1-GCCcore-12.2.0.eb)
* jbigkit/2.1-GCCcore-12.2.0 (jbigkit-2.1-GCCcore-12.2.0.eb)
* Xvfb/21.1.6-GCCcore-12.2.0 (Xvfb-21.1.6-GCCcore-12.2.0.eb)
* Tk/8.6.12-GCCcore-12.2.0 (Tk-8.6.12-GCCcore-12.2.0.eb)
* libdeflate/1.15-GCCcore-12.2.0 (libdeflate-1.15-GCCcore-12.2.0.eb)
* LibTIFF/4.4.0-GCCcore-12.2.0 (LibTIFF-4.4.0-GCCcore-12.2.0.eb)
* NLopt/2.7.1-GCCcore-12.2.0 (NLopt-2.7.1-GCCcore-12.2.0.eb)
* libogg/1.3.5-GCCcore-12.2.0 (libogg-1.3.5-GCCcore-12.2.0.eb)
* FLAC/1.4.2-GCCcore-12.2.0 (FLAC-1.4.2-GCCcore-12.2.0.eb)
* libvorbis/1.3.7-GCCcore-12.2.0 (libvorbis-1.3.7-GCCcore-12.2.0.eb)
* UDUNITS/2.2.28-GCCcore-12.2.0 (UDUNITS-2.2.28-GCCcore-12.2.0.eb)
* libopus/1.3.1-GCCcore-12.2.0 (libopus-1.3.1-GCCcore-12.2.0.eb)
* Szip/2.1.1-GCCcore-12.2.0 (Szip-2.1.1-GCCcore-12.2.0.eb)
* GSL/2.7-GCC-12.2.0 (GSL-2.7-GCC-12.2.0.eb)
* LAME/3.100-GCCcore-12.2.0 (LAME-3.100-GCCcore-12.2.0.eb)
* libsndfile/1.2.0-GCCcore-12.2.0 (libsndfile-1.2.0-GCCcore-12.2.0.eb)
* GLPK/5.0-GCCcore-12.2.0 (GLPK-5.0-GCCcore-12.2.0.eb)
* LittleCMS/2.14-GCCcore-12.2.0 (LittleCMS-2.14-GCCcore-12.2.0.eb)
* MPFR/4.2.0-GCCcore-12.2.0 (MPFR-4.2.0-GCCcore-12.2.0.eb)
* ATK/2.38.0-GCCcore-12.2.0 (ATK-2.38.0-GCCcore-12.2.0.eb)
* GEOS/3.11.1-GCC-12.2.0 (GEOS-3.11.1-GCC-12.2.0.eb)
* Gdk-Pixbuf/2.42.10-GCCcore-12.2.0 (Gdk-Pixbuf-2.42.10-GCCcore-12.2.0.eb)
* PCRE/8.45-GCCcore-12.2.0 (PCRE-8.45-GCCcore-12.2.0.eb)
* FriBidi/1.0.12-GCCcore-12.2.0 (FriBidi-1.0.12-GCCcore-12.2.0.eb)
* at-spi2-core/2.46.0-GCCcore-12.2.0 (at-spi2-core-2.46.0-GCCcore-12.2.0.eb)
* Pango/1.50.12-GCCcore-12.2.0 (Pango-1.50.12-GCCcore-12.2.0.eb)
* libgit2/1.5.0-GCCcore-12.2.0 (libgit2-1.5.0-GCCcore-12.2.0.eb)
* at-spi2-atk/2.38.0-GCCcore-12.2.0 (at-spi2-atk-2.38.0-GCCcore-12.2.0.eb)
* HDF5/1.14.0-gompi-2022b (HDF5-1.14.0-gompi-2022b.eb)
* netCDF/4.9.0-gompi-2022b (netCDF-4.9.0-gompi-2022b.eb)
* libepoxy/1.5.10-GCCcore-12.2.0 (libepoxy-1.5.10-GCCcore-12.2.0.eb)
* GTK3/3.24.35-GCCcore-12.2.0 (GTK3-3.24.35-GCCcore-12.2.0.eb)
* Ghostscript/10.0.0-GCCcore-12.2.0 (Ghostscript-10.0.0-GCCcore-12.2.0.eb)
* ImageMagick/7.1.0-53-GCCcore-12.2.0 (ImageMagick-7.1.0-53-GCCcore-12.2.0.eb)
* googletest/1.12.1-GCCcore-12.2.0 (googletest-1.12.1-GCCcore-12.2.0.eb)
* nlohmann_json/3.11.2-GCCcore-12.2.0 (nlohmann_json-3.11.2-GCCcore-12.2.0.eb)
* PROJ/9.1.1-GCCcore-12.2.0 (PROJ-9.1.1-GCCcore-12.2.0.eb)
* libgeotiff/1.7.1-GCCcore-12.2.0 (libgeotiff-1.7.1-GCCcore-12.2.0.eb)
* hypothesis/6.68.2-GCCcore-12.2.0 (hypothesis-6.68.2-GCCcore-12.2.0.eb)
* libtirpc/1.3.3-GCCcore-12.2.0 (libtirpc-1.3.3-GCCcore-12.2.0.eb)
* HDF/4.2.15-GCCcore-12.2.0 (HDF-4.2.15-GCCcore-12.2.0.eb)
* CFITSIO/4.2.0-GCCcore-12.2.0 (CFITSIO-4.2.0-GCCcore-12.2.0.eb)
* gfbf/2022b (gfbf-2022b.eb)
* Boost/1.81.0-GCC-12.2.0 (Boost-1.81.0-GCC-12.2.0.eb)
* Eigen/3.4.0-GCCcore-12.2.0 (Eigen-3.4.0-GCCcore-12.2.0.eb)
* giflib/5.2.1-GCCcore-12.2.0 (giflib-5.2.1-GCCcore-12.2.0.eb)
* arpack-ng/3.8.0-foss-2022b (arpack-ng-3.8.0-foss-2022b.eb)
* Catch2/2.13.9-GCCcore-12.2.0 (Catch2-2.13.9-GCCcore-12.2.0.eb)
* Armadillo/11.4.3-foss-2022b (Armadillo-11.4.3-foss-2022b.eb)
* pybind11/2.10.3-GCCcore-12.2.0 (pybind11-2.10.3-GCCcore-12.2.0.eb)
* SciPy-bundle/2023.02-gfbf-2022b (SciPy-bundle-2023.02-gfbf-2022b.eb)
* json-c/0.16-GCCcore-12.2.0 (json-c-0.16-GCCcore-12.2.0.eb)
* Xerces-C++/3.2.4-GCCcore-12.2.0 (Xerces-C++-3.2.4-GCCcore-12.2.0.eb)
* Imath/3.1.6-GCCcore-12.2.0 (Imath-3.1.6-GCCcore-12.2.0.eb)
* OpenEXR/3.1.5-GCCcore-12.2.0 (OpenEXR-3.1.5-GCCcore-12.2.0.eb)
* Qhull/2020.2-GCCcore-12.2.0 (Qhull-2020.2-GCCcore-12.2.0.eb)
* Highway/1.0.3-GCCcore-12.2.0 (Highway-1.0.3-GCCcore-12.2.0.eb)
* Brunsli/0.1-GCCcore-12.2.0 (Brunsli-0.1-GCCcore-12.2.0.eb)
* LERC/4.0.0-GCCcore-12.2.0 (LERC-4.0.0-GCCcore-12.2.0.eb)
* OpenJPEG/2.5.0-GCCcore-12.2.0 (OpenJPEG-2.5.0-GCCcore-12.2.0.eb)
* GDAL/3.6.2-foss-2022b (GDAL-3.6.2-foss-2022b.eb)
* R/4.2.2-foss-2022b (R-4.2.2-foss-2022b.eb)

eessi-bot · 2024-01-15T10:45:24Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

TopRichard · 2024-01-15T10:48:17Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

bedroge · 2024-01-15T10:48:18Z

This depends on / has a significant overlap with:

so it's probably best to wait till those have been merged.

eessi-bot · 2024-01-15T10:48:20Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 4143, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)

eessi-bot · 2024-01-15T10:48:25Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.01/pr_452/4143

date	job status	comment
Jan 15 10:48:24 UTC 2024	submitted	job id `4143` awaits release by job manager
Jan 15 10:49:01 UTC 2024	released	job awaits launch by Slurm scheduler
Jan 15 10:54:04 UTC 2024	running	job `4143` is running
Jan 15 11:36:46 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-4143.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1705318561.tar.gz` size: 59 MiB (62477948 bytes) entries: 5965 modules under 2023.06/software/linux/x86_64/generic/modules/all `ATK/2.38.0-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `FriBidi/1.0.12-GCCcore-12.2.0.lua` `Gdk-Pixbuf/2.42.10-GCCcore-12.2.0.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `HDF5/1.14.0-gompi-2022b.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `LittleCMS/2.14-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `Pango/1.50.12-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `Szip/2.1.1-GCCcore-12.2.0.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `ATK/2.38.0-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `FriBidi/1.0.12-GCCcore-12.2.0` `Gdk-Pixbuf/2.42.10-GCCcore-12.2.0` `GEOS/3.11.1-GCC-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `HDF5/1.14.0-gompi-2022b` `jbigkit/2.1-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `LittleCMS/2.14-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `Pango/1.50.12-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `Szip/2.1.1-GCCcore-12.2.0` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Jan 15 11:36:46 UTC 2024	test result	(no tests yet)

bedroge · 2024-02-10T21:44:31Z

This depends on / has a significant overlap with:

{2023.06}[foss/2022b] GDAL 3.6.2 #419

{2023.06}[2022b] SciPy-bundle v2023.02 #448

so it's probably best to wait till those have been merged.

@TopRichard Those two PRs have been merged, so you can try this one now.

boegel · 2024-02-11T09:13:26Z

merge conflict should be fixed first

TopRichard · 2024-02-11T09:21:08Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

eessi-bot · 2024-02-11T09:21:11Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 5778, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)

eessi-bot · 2024-02-11T09:21:15Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.02/pr_452/5778

date	job status	comment
Feb 11 09:21:14 UTC 2024	submitted	job id `5778` awaits release by job manager
Feb 11 09:21:24 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 11 09:26:26 UTC 2024	running	job `5778` is running
Feb 11 10:09:05 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-5778.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1707646062.tar.gz` size: 106 MiB (111998460 bytes) entries: 9146 modules under 2023.06/software/linux/x86_64/generic/modules/all `ATK/2.38.0-GCCcore-12.2.0.lua` `at-spi2-atk/2.38.0-GCCcore-12.2.0.lua` `at-spi2-core/2.46.0-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `FriBidi/1.0.12-GCCcore-12.2.0.lua` `Gdk-Pixbuf/2.42.10-GCCcore-12.2.0.lua` `Ghostscript/10.0.0-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `GTK3/3.24.35-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libepoxy/1.5.10-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `LittleCMS/2.14-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `Pango/1.50.12-GCCcore-12.2.0.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `ATK/2.38.0-GCCcore-12.2.0` `at-spi2-atk/2.38.0-GCCcore-12.2.0` `at-spi2-core/2.46.0-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `FriBidi/1.0.12-GCCcore-12.2.0` `Gdk-Pixbuf/2.42.10-GCCcore-12.2.0` `Ghostscript/10.0.0-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `GTK3/3.24.35-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libepoxy/1.5.10-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `LittleCMS/2.14-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `Pango/1.50.12-GCCcore-12.2.0` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 11 10:09:05 UTC 2024	test result	(no tests yet)

bedroge · 2024-02-11T10:19:35Z

Now ImageMagick is failing with similar issues as in #428:

/cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/bin/ld: warning: libfribidi.so.0, needed by /cvmfs/software.eessi.io/versions/2023.06/s
oftware/linux/x86_64/generic/software/Pango/1.50.12-GCCcore-12.2.0/lib64/libpango-1.0.so, not found (try using -rpath or -rpath-link)
/cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/bin/ld: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/Pango/1.50.12-GCCcore-12.2.0/lib64/libpango-1.0.so: undefined reference to `fribidi_get_par_embedding_levels_ex'
/cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/bin/ld: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/Pango/1.50.12-GCCcore-12.2.0/lib64/libpango-1.0.so: undefined reference to `fribidi_get_bidi_type'
/cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/bin/ld: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/Pango/1.50.12-GCCcore-12.2.0/lib64/libpango-1.0.so: undefined reference to `fribidi_get_bracket'

…oss/2022b

bedroge · 2024-03-12T16:10:46Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

eessi-bot · 2024-03-12T16:10:49Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 7594, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)

eessi-bot · 2024-03-12T16:10:53Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/7594

date	job status	comment
Mar 12 16:10:52 UTC 2024	submitted	job id `7594` awaits release by job manager
Mar 12 16:11:46 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 16:25:15 UTC 2024	running	job `7594` is running
Mar 13 01:15:29 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7594.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1710292327.tar.gz` size: 1643 MiB (1722979607 bytes) entries: 77086 modules under 2023.06/software/linux/x86_64/generic/modules/all `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 13 01:15:29 UTC 2024	test result	(no tests yet)

bedroge · 2024-03-12T16:20:44Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot · 2024-03-12T16:20:47Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 7596, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)

eessi-bot · 2024-03-12T16:20:51Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/7596

date	job status	comment
Mar 12 16:20:50 UTC 2024	submitted	job id `7596` awaits release by job manager
Mar 12 16:21:01 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 16:22:06 UTC 2024	running	job `7596` is running
Mar 12 22:13:59 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7596.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1710281416.tar.gz` size: 1645 MiB (1725924631 bytes) entries: 77086 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 22:13:59 UTC 2024	test result	(no tests yet)

bedroge · 2024-03-12T19:36:05Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-03-12T19:36:08Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 7622, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 7623, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7624, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 7625, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 7626, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 7627, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)

eessi-bot · 2024-03-12T19:36:14Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/7622

date	job status	comment
Mar 12 19:36:13 UTC 2024	submitted	job id `7622` awaits release by job manager
Mar 12 19:37:02 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 19:38:17 UTC 2024	running	job `7622` is running
Mar 13 01:01:18 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7622.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1710291348.tar.gz` size: 34 MiB (35910691 bytes) entries: 3093 modules under 2023.06/software/linux/aarch64/generic/modules/all `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 13 01:01:18 UTC 2024	test result	(no tests yet)

eessi-bot · 2024-03-12T19:36:18Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/7623

date	job status	comment
Mar 12 19:36:17 UTC 2024	submitted	job id `7623` awaits release by job manager
Mar 12 19:37:04 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 19:41:41 UTC 2024	running	job `7623` is running
Mar 13 01:13:08 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7623.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1710292042.tar.gz` size: 34 MiB (35961280 bytes) entries: 3093 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 13 01:13:08 UTC 2024	test result	(no tests yet)

eessi-bot · 2024-03-12T19:36:21Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/7624

date	job status	comment
Mar 12 19:36:20 UTC 2024	submitted	job id `7624` awaits release by job manager
Mar 12 19:37:05 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 19:38:19 UTC 2024	running	job `7624` is running
Mar 12 23:33:36 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7624.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1710286113.tar.gz` size: 34 MiB (35995471 bytes) entries: 3093 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 23:33:36 UTC 2024	test result	(no tests yet)

eessi-bot · 2024-03-12T19:36:25Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/7625

date	job status	comment
Mar 12 19:36:24 UTC 2024	submitted	job id `7625` awaits release by job manager
Mar 12 19:37:07 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 19:42:51 UTC 2024	running	job `7625` is running
Mar 13 03:50:52 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7625.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1710301649.tar.gz` size: 1646 MiB (1726288345 bytes) entries: 77086 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 13 03:50:52 UTC 2024	test result	(no tests yet)

eessi-bot · 2024-03-12T19:36:28Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/7626

date	job status	comment
Mar 12 19:36:27 UTC 2024	submitted	job id `7626` awaits release by job manager
Mar 12 19:37:09 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 19:38:24 UTC 2024	running	job `7626` is running
Mar 13 04:31:54 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7626.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1710304124.tar.gz` size: 1646 MiB (1726951239 bytes) entries: 77086 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 13 04:31:54 UTC 2024	test result	(no tests yet)

eessi-bot · 2024-03-12T19:36:31Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/7627

date	job status	comment
Mar 12 19:36:31 UTC 2024	submitted	job id `7627` awaits release by job manager
Mar 12 19:37:11 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 19:38:25 UTC 2024	running	job `7627` is running
Mar 13 02:56:49 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7627.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1710298398.tar.gz` size: 1647 MiB (1727084426 bytes) entries: 77086 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 13 02:56:49 UTC 2024	test result	(no tests yet)

bedroge · 2024-03-13T07:09:05Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/7624

date job status comment
Mar 12 19:36:20 UTC 2024 submitted job id 7624 awaits release by job manager
Mar 12 19:37:05 UTC 2024 released job awaits launch by Slurm scheduler
Mar 12 19:38:19 UTC 2024 running job 7624 is running
Mar 12 23:33:36 UTC 2024 finished
😢 FAILURE (click triangle for details)
Mar 12 23:33:36 UTC 2024 test result (no tests yet)

Seems like we're almost there, but the Arm builds (at least the one for neoverse_v1) failed at dbarts 0.9-23 (929/1197)... with a whole bunch of the following errors:

   16 |   uint8x16_t vmask = vandq_u8(input, vdupq_n_u8(0x80));
      |   ^~~~~~~~~~
partition_neon.c:16:31: error: incompatible type for argument 1 of vandq_u8
   16 |   uint8x16_t vmask = vandq_u8(input, vdupq_n_u8(0x80));
      |                               ^~~~~
      |                               |
      |                               uint16x8_t
In file included from ../include/misc/intrinsic.h:9,
                 from partition_neon.c:8:
/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/GCCcore/12.2.0/lib/gcc/aarch64-unknown-linux-gnu/12.2.0/include/arm_neon.h:1120:22: note: expected uint8x16_t but argument is of type uint16x8_t
 1120 | vandq_u8 (uint8x16_t __a, uint8x16_t __b)
      |           ~~~~~~~~~~~^~~
partition_neon.c:19:27: error: incompatible type for argument 2 of vshlq_u8
   19 |   vmask = vshlq_u8(vmask, vshift);
      |                           ^~~~~~
      |                           |
      |                           uint8x16_t
/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/GCCcore/12.2.0/lib/gcc/aarch64-unknown-linux-gnu/12.2.0/include/arm_neon.h:23830:37: note: expected int8x16_t but argument is of type uint8x16_t
23830 | vshlq_u8 (uint8x16_t __a, int8x16_t __b)
      |                           ~~~~~~~~~~^~~
In file included from partition_neon.c:29:
partition_body.c: In function misc_partitionRange_neon:
partition_body.c:147:38: error: incompatible type for argument 1 of vmovemask_u8
  147 | #  define movemask(_X_) vmovemask_u8(vreinterpretq_u8_u16(_X_))
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
      |                                      |
      |                                      uint8x16_t

boegel · 2024-03-13T08:57:38Z

@bedroge Looks very similar to ggml-org/llama.cpp#949 (but different software), seems like we'll need a patch?
Maybe start with reporting the issue via https://github.com/vdorie/dbarts/blob/main/src/misc/partition_neon.c, repo seems pretty active...

bedroge · 2024-03-14T08:17:49Z

Opened an issue: vdorie/dbarts#66

bedroge · 2024-03-28T10:12:08Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-03-28T10:12:11Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8728, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)

eessi-bot · 2024-03-28T10:12:14Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/8728

date	job status	comment
Mar 28 10:12:13 UTC 2024	submitted	job id `8728` awaits release by job manager
Mar 28 10:12:21 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 28 10:13:38 UTC 2024	running	job `8728` is running
Mar 28 15:46:59 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8728.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1711640135.tar.gz` size: 1656 MiB (1736681692 bytes) entries: 78515 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Mar 28 15:46:59 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8728.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Mar 30 17:48:52 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1711640135.tar.gz` to S3 bucket succeeded

bedroge · 2024-03-30T06:47:42Z

`
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-03-30T06:47:45Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 8800, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 8801, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 8802, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 8803, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 8804, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 8805, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 8806, for details & status see {2023.06}[foss/2022b] R v4.2.2 #452 (comment)

eessi-bot · 2024-03-30T06:47:48Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/8800

date	job status	comment
Mar 30 06:47:48 UTC 2024	submitted	job id `8800` awaits release by job manager
Mar 30 06:48:01 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 30 06:52:15 UTC 2024	running	job `8800` is running
Mar 30 14:35:16 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8800.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1711808486.tar.gz` size: 1656 MiB (1736669682 bytes) entries: 78515 modules under 2023.06/software/linux/aarch64/generic/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Mar 30 14:35:16 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8800.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Mar 30 17:49:27 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1711808486.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-30T06:47:52Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/8801

date	job status	comment
Mar 30 06:47:51 UTC 2024	submitted	job id `8801` awaits release by job manager
Mar 30 06:48:03 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 30 06:52:17 UTC 2024	running	job `8801` is running
Mar 30 14:37:30 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8801.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1711808636.tar.gz` size: 1656 MiB (1737291778 bytes) entries: 78515 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Mar 30 14:37:30 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8801.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Mar 30 17:50:01 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1711808636.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-30T06:47:55Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/8802

date	job status	comment
Mar 30 06:47:54 UTC 2024	submitted	job id `8802` awaits release by job manager
Mar 30 06:48:07 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 30 06:53:25 UTC 2024	running	job `8802` is running
Mar 30 16:10:58 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8802.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1711813911.tar.gz` size: 1663 MiB (1744632433 bytes) entries: 78515 modules under 2023.06/software/linux/x86_64/generic/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Mar 30 16:10:58 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8802.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Mar 30 17:45:59 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1711813911.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-30T06:47:58Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/8803

date	job status	comment
Mar 30 06:47:58 UTC 2024	submitted	job id `8803` awaits release by job manager
Mar 30 06:48:05 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 30 06:53:21 UTC 2024	running	job `8803` is running
Mar 30 16:39:39 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8803.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1711815500.tar.gz` size: 1667 MiB (1748326176 bytes) entries: 78515 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Mar 30 16:39:39 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8803.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Mar 30 17:47:08 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1711815500.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-30T06:48:02Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/8804

date	job status	comment
Mar 30 06:48:01 UTC 2024	submitted	job id `8804` awaits release by job manager
Mar 30 06:49:09 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 30 06:53:23 UTC 2024	running	job `8804` is running
Mar 30 13:50:39 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8804.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1711805817.tar.gz` size: 1666 MiB (1747712724 bytes) entries: 78515 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Mar 30 13:50:39 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8804.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Mar 30 17:46:33 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1711805817.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-30T06:48:05Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/8805

date	job status	comment
Mar 30 06:48:04 UTC 2024	submitted	job id `8805` awaits release by job manager
Mar 30 06:49:11 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 30 06:54:33 UTC 2024	running	job `8805` is running
Mar 30 16:15:08 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8805.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1711814207.tar.gz` size: 1667 MiB (1748721846 bytes) entries: 78515 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/haswell no other files in tarball
Mar 30 16:15:08 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8805.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Mar 30 17:47:43 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1711814207.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-30T06:48:09Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_452/8806

date	job status	comment
Mar 30 06:48:08 UTC 2024	submitted	job id `8806` awaits release by job manager
Mar 30 06:49:13 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 30 06:55:42 UTC 2024	running	job `8806` is running
Mar 30 14:48:16 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8806.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1711809051.tar.gz` size: 1667 MiB (1748639128 bytes) entries: 78515 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Mar 30 14:48:16 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8806.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Mar 30 17:48:18 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1711809051.tar.gz` to S3 bucket succeeded

{2023.06}[foss/2022b] R v4.2.2

41f6dea

TopRichard added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Jan 15, 2024

sync local branch with remote

1754d8a

trz42 mentioned this pull request Feb 11, 2024

{2023.06}[foss/2022b] ImageMagick v7.1.0-53 #470

Merged

Merge branch '2023.06-software.eessi.io' into eessi-2023.06-R/4.2.2-f…

85f80d4

…oss/2022b

use easyconfigs PR #20238 for R 4.2.2

1489742

bedroge mentioned this pull request Mar 28, 2024

fix incompatible types errors when building the R extension dbarts on Arm easybuilders/easybuild-easyconfigs#20238

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bedroge added the bot:deploy Ask bot to deploy missing software installations to EESSI label Mar 30, 2024

bedroge approved these changes Mar 30, 2024

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bedroge merged commit 58e57f2 into EESSI:2023.06-software.eessi.io Mar 30, 2024

trz42 mentioned this pull request Apr 5, 2024

Syncing code-base and CVMFS repository with EESSI (April 2024) NorESSI/software-layer#294

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TopRichard deleted the eessi-2023.06-R/4.2.2-foss/2022b branch March 30, 2026 15:26

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