{2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 by t1mk1k · Pull Request #497 · EESSI/software-layer

t1mk1k · 2024-03-12T09:20:11Z

No description provided.

eessi-bot · 2024-03-12T09:20:15Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

bedroge · 2024-03-12T09:25:21Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-03-12T09:25:24Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7528, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)

eessi-bot · 2024-03-12T09:25:27Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7528

date	job status	comment
Mar 12 09:25:27 UTC 2024	submitted	job id `7528` awaits release by job manager
Mar 12 09:25:49 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 09:29:51 UTC 2024	running	job `7528` is running
Mar 12 09:32:54 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7528.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts Details No artefacts were created or found.
Mar 12 09:32:54 UTC 2024	test result	(no tests yet)

bedroge · 2024-03-12T09:38:58Z

It's failing because of:

  g++ -shared -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FFTW/3.3.10-GCC-13.2.0/lib64 -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FFTW/3.3.10-GCC-13.2.0/lib -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64 -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64 -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/GCCcore/13.2.0/lib64 -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/GCCcore/13.2.0/lib -O2 -ftree-vectorize -mcpu=native -fno-math-errno -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FFTW/3.3.10-GCC-13.2.0/include -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FlexiBLAS/3.3.1-GCC-13.2.0/include -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas build/temp.linux-aarch64-cpython-311/src/fit.o build/temp.linux-aarch64-cpython-311/src/fitting.o -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Python/3.11.5-GCCcore-13.2.0/lib -lcasa_scimath -lcasa_scimath_f -lboost_python-py311-mt -lcasa_python3 -o build/lib.linux-aarch64-cpython-311/casacore/fitting/_fitting.cpython-311-aarch64-linux-gnu.so
  /cvmfs/software.eessi.io/versions/2023.06/compat/linux/aarch64/usr/bin/ld: cannot find -lboost_python-py311-mt: No such file or directory
  collect2: error: ld returned 1 exit status
  error: command '/tmp/eb-zqmf_waz/eb-i3hfwmjh/tmp3hqdnuyh/rpath_wrappers/gxx_wrapper/g++' failed with exit code 1
  error: subprocess-exited-with-error
  
   python setup.py bdist_wheel did not run successfully.
   exit code: 1

In the Boost.Python installation dir I only see the following ones:

$ ls /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Boost.Python/1.83.0-GCC-13.2.0/lib
cmake                             libboost_python311-mt-a64.a
libboost_python311.a              libboost_python311-mt-a64.so
libboost_python311-a64.a          libboost_python311-mt-a64.so.1.83.0
libboost_python311-a64.so         libboost_python311.so
libboost_python311-a64.so.1.83.0  libboost_python311.so.1.83.0

bedroge · 2024-03-12T09:45:51Z

Actually, it seems like it cannot find Boost and Casacore:

  Could not find a Python boost library! Please use your package manager to install boost.

  Or install it manually:

  http://boostorg.github.io/python/doc/html/index.html

    warnings.warn(no_boost_error)
  /tmp/bot/easybuild/build/pythoncasacore/3.5.2/foss-2023b/pythoncasacore/python-casacore-3.5.2/setup.py:154: UserWarning: Could not find Casacore!

  Casacore is a critical requirement. Please install Casacore using a package manager or install it manually.
  You can find installation instructions on:

   https://github.com/casacore/casacore

  If you have Casacore installed in a non default location, you need to specify the location:

  $ python setup.py build_ext -I/opt/casacore/include:/other/include/path -L/opt/casacore/lib

  Don't give up!

bedroge · 2024-03-12T09:48:23Z

It looks like it's trying to use $LD_LIBRARY_PATH to find the location of the required libraries:
https://github.com/casacore/python-casacore/blob/master/setup.py#L54
But in EESSI we don't use/set $LD_LIBRARY_PATH, so we'll have to provide the locations in some other way.

ocaisa · 2024-03-12T09:52:25Z

A quick fix would be to (temporarily) set LD_LIBRARY_PATH=$LIBRARY_PATH

t1mk1k · 2024-03-12T10:17:03Z

A quick fix would be to (temporarily) set LD_LIBRARY_PATH=$LIBRARY_PATH

Should I change that in the easyconfig? Or is this something that can be set in the easystack file (if so, I'm not sure which EB argument to use)?

ocaisa · 2024-03-12T10:30:19Z

I would do it in the easyconfig, you could do that in a forgiving way:

if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi

and I think you need it placed like https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/t/torchvf/torchvf-0.1.3-foss-2022a-CUDA-11.7.0.eb#L34

bedroge · 2024-03-12T11:21:27Z

I would do it in the easyconfig, you could do that in a forgiving way:
if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi 
and I think you need it placed like https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/t/torchvf/torchvf-0.1.3-foss-2022a-CUDA-11.7.0.eb#L34

I just tried this interactively on the build cluster by adding:

        'preinstallopts': 'if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi && '

and then the build completed without any issues. I agree it would be best to add this to the easyconfig, as other people may run into this as well.

t1mk1k · 2024-03-12T17:37:01Z

I would do it in the easyconfig, you could do that in a forgiving way:
if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi 
and I think you need it placed like https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/t/torchvf/torchvf-0.1.3-foss-2022a-CUDA-11.7.0.eb#L34
I just tried this interactively on the build cluster by adding:
        'preinstallopts': 'if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi && '
and then the build completed without any issues. I agree it would be best to add this to the easyconfig, as other people may run into this as well.

Thanks for testing! I've created a PR in easybuild-easyconfigs: easybuilders/easybuild-easyconfigs#20089

ocaisa · 2024-03-12T18:33:15Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-03-12T18:33:17Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7601, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)

eessi-bot · 2024-03-12T18:33:21Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7601

date	job status	comment
Mar 12 18:33:20 UTC 2024	submitted	job id `7601` awaits release by job manager
Mar 12 18:33:49 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:39:03 UTC 2024	running	job `7601` is running
Mar 12 18:44:23 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7601.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1710268976.tar.gz` size: 14 MiB (15694002 bytes) entries: 721 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:44:23 UTC 2024	test result	(no tests yet)
Mar 12 19:08:29 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1710268976.tar.gz` to S3 bucket succeeded

bedroge · 2024-03-12T18:45:56Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-03-12T18:45:59Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 7603, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 7604, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 7605, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 7607, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 7608, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 7609, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 7610, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)

eessi-bot · 2024-03-12T18:46:03Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7603

date	job status	comment
Mar 12 18:46:02 UTC 2024	submitted	job id `7603` awaits release by job manager
Mar 12 18:46:28 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:51:00 UTC 2024	running	job `7603` is running
Mar 12 18:57:55 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7603.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1710269788.tar.gz` size: 14 MiB (15665469 bytes) entries: 721 modules under 2023.06/software/linux/aarch64/generic/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/aarch64/generic/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:57:55 UTC 2024	test result	(no tests yet)
Mar 12 19:08:48 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1710269788.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:06Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7604

date	job status	comment
Mar 12 18:46:05 UTC 2024	submitted	job id `7604` awaits release by job manager
Mar 12 18:46:30 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:52:08 UTC 2024	running	job `7604` is running
Mar 12 18:59:02 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7604.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1710269892.tar.gz` size: 14 MiB (15685877 bytes) entries: 721 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:59:02 UTC 2024	test result	(no tests yet)
Mar 12 19:09:09 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1710269892.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:10Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7605

date	job status	comment
Mar 12 18:46:09 UTC 2024	submitted	job id `7605` awaits release by job manager
Mar 12 18:46:36 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:47:49 UTC 2024	running	job `7605` is running
Mar 12 18:53:23 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7605.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1710269570.tar.gz` size: 15 MiB (15971737 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/generic/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/generic/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:53:23 UTC 2024	test result	(no tests yet)
Mar 12 19:09:30 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1710269570.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:13Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7607

date	job status	comment
Mar 12 18:46:12 UTC 2024	submitted	job id `7607` awaits release by job manager
Mar 12 18:46:32 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:47:44 UTC 2024	running	job `7607` is running
Mar 12 18:53:21 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7607.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1710269516.tar.gz` size: 15 MiB (16065441 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:53:21 UTC 2024	test result	(no tests yet)
Mar 12 19:09:50 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1710269516.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:16Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7608

date	job status	comment
Mar 12 18:46:16 UTC 2024	submitted	job id `7608` awaits release by job manager
Mar 12 18:46:34 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:53:19 UTC 2024	running	job `7608` is running
Mar 12 18:59:03 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7608.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1710269855.tar.gz` size: 15 MiB (16063906 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:59:03 UTC 2024	test result	(no tests yet)
Mar 12 19:10:10 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1710269855.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:20Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7609

date	job status	comment
Mar 12 18:46:19 UTC 2024	submitted	job id `7609` awaits release by job manager
Mar 12 18:46:37 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:54:30 UTC 2024	running	job `7609` is running
Mar 12 19:01:14 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7609.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1710269992.tar.gz` size: 15 MiB (16076530 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 19:01:14 UTC 2024	test result	(no tests yet)
Mar 12 19:10:29 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1710269992.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:23Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7610

date	job status	comment
Mar 12 18:46:22 UTC 2024	submitted	job id `7610` awaits release by job manager
Mar 12 18:46:39 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:55:39 UTC 2024	running	job `7610` is running
Mar 12 19:01:16 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7610.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1710270007.tar.gz` size: 15 MiB (16080842 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 19:01:16 UTC 2024	test result	(no tests yet)
Mar 12 19:10:48 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1710270007.tar.gz` to S3 bucket succeeded

bedroge · 2024-03-12T20:37:10Z

Thanks for testing! I've created a PR in easybuild-easyconfigs: easybuilders/easybuild-easyconfigs#20089

Thanks for the quick fix!

{2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3

0343684

Use PR that sets LD_LIBRARY_PATH for python-casacore

0295571

ocaisa added the bot:deploy Ask bot to deploy missing software installations to EESSI label Mar 12, 2024

bedroge approved these changes Mar 12, 2024

View reviewed changes

bedroge merged commit 222d929 into EESSI:2023.06-software.eessi.io Mar 12, 2024

trz42 added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Apr 5, 2024

Conversation

t1mk1k commented Mar 12, 2024

Uh oh!

eessi-bot Bot commented Mar 12, 2024

Uh oh!

bedroge commented Mar 12, 2024

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

bedroge commented Mar 12, 2024

Uh oh!

bedroge commented Mar 12, 2024

Uh oh!

bedroge commented Mar 12, 2024

Uh oh!

ocaisa commented Mar 12, 2024

Uh oh!

t1mk1k commented Mar 12, 2024

Uh oh!

ocaisa commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

bedroge commented Mar 12, 2024

Uh oh!

t1mk1k commented Mar 12, 2024

Uh oh!

ocaisa commented Mar 12, 2024

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

bedroge commented Mar 12, 2024

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot Bot commented Mar 12, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

bedroge commented Mar 12, 2024

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

4 participants

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

ocaisa commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading

eessi-bot Bot commented Mar 12, 2024 •

edited

Loading