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Fix test_suite not being able to retrieve memory on systems that use cgroups v2#670

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boegel merged 18 commits intoEESSI:2023.06-software.eessi.iofrom
casparvl:fix_testsuite_azure
Aug 19, 2024
Merged

Fix test_suite not being able to retrieve memory on systems that use cgroups v2#670
boegel merged 18 commits intoEESSI:2023.06-software.eessi.iofrom
casparvl:fix_testsuite_azure

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@casparvl casparvl added the bug Something isn't working label Aug 14, 2024
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eessi-bot Bot commented Aug 14, 2024

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

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eessi-bot Bot commented Aug 14, 2024

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat, eessi-hpc.org-2023.06-software, eessi.io-2023.06-software

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Instance boegel-bot-deucalion is configured to build for:

  • architectures: aarch64/a64fx
  • repositories: eessi.io-2023.06-software

@casparvl
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bot: build repo:eessi.io-2023.06-software arch:zen4

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eessi-bot Bot commented Aug 14, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:zen4 from casparvl

    • expanded format: build repository:eessi.io-2023.06-software architecture:zen4
  • handling command build repository:eessi.io-2023.06-software architecture:zen4 resulted in:

    • no jobs were submitted

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eessi-bot Bot commented Aug 14, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)

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eessi-bot Bot commented Aug 14, 2024

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_670/199

date job status comment
Aug 14 15:37:13 UTC 2024 submitted job id 199 awaits release by job manager
Aug 14 15:37:48 UTC 2024 released job awaits launch by Slurm scheduler
Aug 14 15:38:51 UTC 2024 running job 199 is running
Aug 14 15:39:52 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-199.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
Details
No artefacts were created or found.
Aug 14 15:39:52 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
Failed for unknown reason
Details
✅ job output file slurm-199.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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Updates by the bot instance boegel-bot-deucalion (click for details)
  • account casparvl has NO permission to send commands to the bot

@casparvl
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bot: build repo:eessi.io-2023.06-software arch:zen4

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eessi-bot Bot commented Aug 14, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:zen4 from casparvl

    • expanded format: build repository:eessi.io-2023.06-software architecture:zen4
  • handling command build repository:eessi.io-2023.06-software architecture:zen4 resulted in:

    • no jobs were submitted

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eessi-bot Bot commented Aug 14, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)

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eessi-bot Bot commented Aug 14, 2024

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_670/200

date job status comment
Aug 14 15:41:34 UTC 2024 submitted job id 200 awaits release by job manager
Aug 14 15:41:55 UTC 2024 released job awaits launch by Slurm scheduler
Aug 14 15:42:58 UTC 2024 running job 200 is running
Aug 14 16:16:42 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-200.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
Details
No artefacts were created or found.
Aug 14 16:16:42 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite produced failures.
ReFrame Summary
[ FAILED ] Ran 10/18 test case(s) from 18 check(s) (1 failure(s), 8 skipped, 0 aborted)
Details
✅ job output file slurm-200.out
❌ found message matching ERROR:
❌ found message matching [\s*FAILED\s*].*Ran .* test case

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Updates by the bot instance boegel-bot-deucalion (click for details)
  • account casparvl has NO permission to send commands to the bot

@casparvl
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Ok, need to debug further, it seems to get a memory limit of 0 now...

[ RUN      ] EESSI_CP2K %benchmark_info=QS/H2O-32 %module_name=CP2K/2023.1-foss-2023a %scale=1_node /ae4db8cc @BotBuildTests:default+default
[     SKIP ] ( 1/18) Skipping test: nodes in this partition only have 0 MiB memory available (per node) accodring to the current ReFrame configuration, but 4198.4 MiB is needed
[ RUN      ] EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /adc964f6 @BotBuildTests:default+default
[     SKIP ] ( 2/18) Skipping test: nodes in this partition only have 0 MiB memory available (per node) accodring to the current ReFrame configuration, but 7372.799999999999 MiB is needed
[ RUN      ] EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /3b8b8926 @BotBuildTests:default+default
[     SKIP ] ( 3/18) Skipping test: nodes in this partition only have 0 MiB memory available (per node) accodring to the current ReFrame configuration, but 7372.799999999999 MiB is needed
[ RUN      ] EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /fdd6aced @BotBuildTests:default+default
[     SKIP ] ( 4/18) Skipping test: nodes in this partition only have 0 MiB memory available (per node) accodring to the current ReFrame configuration, but 7372.799999999999 MiB is needed
[ RUN      ] EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /3b90ffd6 @BotBuildTests:default+default
[     SKIP ] ( 5/18) Skipping test: nodes in this partition only have 0 MiB memory available (per node) accodring to the current ReFrame configuration, but 22118.4 MiB is needed
[ RUN      ] EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /f1621689 @BotBuildTests:default+default
[     SKIP ] ( 6/18) Skipping test: nodes in this partition only have 0 MiB memory available (per node) accodring to the current ReFrame configuration, but 22118.4 MiB is needed
[ RUN      ] EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /4a9e965c @BotBuildTests:default+default
[     SKIP ] ( 7/18) Skipping test: nodes in this partition only have 0 MiB memory available (per node) accodring to the current ReFrame configuration, but 22118.4 MiB is needed
[ RUN      ] EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:default+default
[ RUN      ] EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:default+default
[     SKIP ] ( 8/18) Skipping test: nodes in this partition only have 0 MiB memory available (per node) accodring to the current ReFrame configuration, but 2232.32 MiB is needed

@casparvl
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bot: build repo:eessi.io-2023.06-software arch:zen4

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eessi-bot Bot commented Aug 15, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:zen4 from casparvl

    • expanded format: build repository:eessi.io-2023.06-software architecture:zen4
  • handling command build repository:eessi.io-2023.06-software architecture:zen4 resulted in:

    • no jobs were submitted

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eessi-bot Bot commented Aug 15, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)

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Updates by the bot instance boegel-bot-deucalion (click for details)
  • account casparvl has NO permission to send commands to the bot

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eessi-bot Bot commented Aug 15, 2024

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_670/202

date job status comment
Aug 15 09:48:55 UTC 2024 submitted job id 202 awaits release by job manager
Aug 15 09:49:21 UTC 2024 released job awaits launch by Slurm scheduler
Aug 15 10:13:25 UTC 2024 running job 202 is running
Aug 15 10:14:27 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-202.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
Details
No artefacts were created or found.
Aug 15 10:14:27 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-202.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bot: build repo:eessi.io-2023.06-software arch:zen4

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eessi-bot Bot commented Aug 15, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:zen4 from casparvl

    • expanded format: build repository:eessi.io-2023.06-software architecture:zen4
  • handling command build repository:eessi.io-2023.06-software architecture:zen4 resulted in:

    • no jobs were submitted

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eessi-bot Bot commented Aug 15, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)

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eessi-bot Bot commented Aug 15, 2024

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_670/204

date job status comment
Aug 15 11:05:18 UTC 2024 submitted job id 204 awaits release by job manager
Aug 15 11:05:35 UTC 2024 released job awaits launch by Slurm scheduler
Aug 15 11:48:43 UTC 2024 running job 204 is running
Aug 15 11:50:48 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-204.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
Details
No artefacts were created or found.
Aug 15 11:50:48 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
Failed for unknown reason
Details
✅ job output file slurm-204.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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Updates by the bot instance boegel-bot-deucalion (click for details)
  • account casparvl has NO permission to send commands to the bot

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Updates by the bot instance boegel-bot-deucalion (click for details)
  • account casparvl has NO permission to send commands to the bot

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eessi-bot Bot commented Aug 15, 2024

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_670/210

date job status comment
Aug 15 16:33:00 UTC 2024 submitted job id 210 awaits release by job manager
Aug 15 16:33:48 UTC 2024 released job awaits launch by Slurm scheduler
Aug 15 16:37:51 UTC 2024 running job 210 is running
Aug 15 16:39:54 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-210.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen4-1723739912.tar.gzsize: 43 MiB (46091978 bytes)
entries: 9382
modules under 2023.06/software/linux/x86_64/amd/zen4/modules/all
ReFrame/4.3.3.lua
software under 2023.06/software/linux/x86_64/amd/zen4/software
ReFrame/4.3.3
other under 2023.06/software/linux/x86_64/amd/zen4
no other files in tarball
Aug 15 16:39:54 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-210.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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casparvl commented Aug 15, 2024

I'm confused. In the test step of the bot:

Checking if ReFrame module exists:
ls: cannot access '/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/modules/all/ReFrame/4.3.3.lua': No such file or directory

How can that not exist, I just installed it didn't I? And the test step resumes from the correct tempdir:

./eessi_container.sh --verbose --access rw --mode run --container docker://ghcr.io/eessi/build-node:debian11 --repository eessi.io-2023.06-software --save /project/60006/SHARED/jobs/2024.08/pr_670/event_05f02830-5b24-11ef-8f2d-cbb6fa9c
f255/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software/previous_tmp/build_step --storage /tmp/bot/EESSI --nvidia install --host-injections /project/def-users/bot/shared/host-injections
                     -- ./install_software_layer.sh "--build-logs-dir /project/def-users/SHARED/build-logs --shared-fs-path /project/def-users/bot/shared" "" 2>&1 | tee -a build.outerr.r9Yc
checking for duplicates: 'eessi.io-2023.06-software' and 'eessi.io-2023.06-software'
repo 'eessi.io-2023.06-software' is not an EESSI CVMFS repository...
Using /tmp/bot/EESSI/eessi.XvUflydXGA as tmp directory (to resume session add '--resume /tmp/bot/EESSI/eessi.XvUflydXGA').
...
./eessi_container.sh --verbose --access ro --mode run --container docker://ghcr.io/eessi/build-node:debian11 --repository eessi.io-2023.06-software --save /project/60006/SHARED/jobs/2024.08/pr_670/event_05f02830-5b24-11ef-8f2d-cbb6fa9c
f255/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software/previous_tmp/test_step --resume /tmp/bot/EESSI/eessi.XvUflydXGA --extra-bind-paths /sys/fs/cgroup:/hostsys/fs/cgroup:ro
                     -- ./run_tests.sh "" "" 2>&1 | tee -a test.outerr.J1vQ

What's going on here?

@casparvl
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Tried manually, got:

Apptainer> ls /tmp/overlay-upper/versions/2023.06/software/linux/x86_64/amd/zen4/modules/all/ReFrame/4.3.3.lua
/tmp/overlay-upper/versions/2023.06/software/linux/x86_64/amd/zen4/modules/all/ReFrame/4.3.3.lua
Apptainer> ls /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/modules/all/ReFrame/4.3.3.lua
ls: cannot access '/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/modules/all/ReFrame/4.3.3.lua': No such file or directory

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bot: build repo:eessi.io-2023.06-software arch:zen4

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eessi-bot Bot commented Aug 19, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:zen4 from casparvl

    • expanded format: build repository:eessi.io-2023.06-software architecture:zen4
  • handling command build repository:eessi.io-2023.06-software architecture:zen4 resulted in:

    • no jobs were submitted

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eessi-bot Bot commented Aug 19, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)

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eessi-bot Bot commented Aug 19, 2024

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_670/215

date job status comment
Aug 19 09:48:44 UTC 2024 submitted job id 215 awaits release by job manager
Aug 19 09:49:18 UTC 2024 released job awaits launch by Slurm scheduler
Aug 19 09:52:21 UTC 2024 running job 215 is running
Aug 19 09:55:27 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-215.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
Details
No artefacts were created or found.
Aug 19 09:55:27 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
Failed for unknown reason
Details
✅ job output file slurm-215.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@casparvl
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bot: build repo:eessi.io-2023.06-software arch:zen4

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eessi-bot Bot commented Aug 19, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:zen4 from casparvl

    • expanded format: build repository:eessi.io-2023.06-software architecture:zen4
  • handling command build repository:eessi.io-2023.06-software architecture:zen4 resulted in:

    • no jobs were submitted

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eessi-bot Bot commented Aug 19, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)

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eessi-bot Bot commented Aug 19, 2024

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_670/216

date job status comment
Aug 19 10:05:57 UTC 2024 submitted job id 216 awaits release by job manager
Aug 19 10:06:32 UTC 2024 released job awaits launch by Slurm scheduler
Aug 19 10:07:35 UTC 2024 running job 216 is running
Aug 19 10:36:38 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-216.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
Details
No artefacts were created or found.
Aug 19 10:36:38 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-216.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@casparvl
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This looks the way it should be:

Running tests: reframe --tag CI --tag 1_node --nocolor --run
[ReFrame Setup]
  version:           4.3.3
  command:           '/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/ReFrame/4.3.3/bin/reframe --tag CI --tag 1_node --nocolor --run'
  launched by:       bot@x86-64-amd-zen4-node1.int.azure-almalinux93-202403.eessi.io
  working directory: '/project/60006/SHARED/jobs/2024.08/pr_670/event_9db398f0-5e12-11ef-9aef-c19e8c12e4b6/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software'
  settings files:    '<builtin>', '/project/60006/SHARED/jobs/2024.08/pr_670/event_9db398f0-5e12-11ef-9aef-c19e8c12e4b6/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software/reframe_config_bot.py'
  check search path: (R) '/project/60006/SHARED/jobs/2024.08/pr_670/event_9db398f0-5e12-11ef-9aef-c19e8c12e4b6/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software/EESSI-test-suite/eessi/testsuite/tests'
  stage directory:   '/project/60006/SHARED/jobs/2024.08/pr_670/event_9db398f0-5e12-11ef-9aef-c19e8c12e4b6/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software/reframe_runs/stage'
  output directory:  '/project/60006/SHARED/jobs/2024.08/pr_670/event_9db398f0-5e12-11ef-9aef-c19e8c12e4b6/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software/reframe_runs/output'
  log files:         '/project/60006/SHARED/jobs/2024.08/pr_670/event_9db398f0-5e12-11ef-9aef-c19e8c12e4b6/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software/reframe_runs/logs/reframe_20240819_100712.log'

ESC[33mWARNING: skipping test 'EESSI_PyTorch_torchvision_CPU': test has one or more undefined parametersESC[0m
ESC[33mWARNING: skipping test 'EESSI_PyTorch_torchvision_GPU': test has one or more undefined parametersESC[0m
ESC[33mWARNING: skipping test file '/project/60006/SHARED/jobs/2024.08/pr_670/event_9db398f0-5e12-11ef-9aef-c19e8c12e4b6/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software/EESSI-test-suite/eessi/testsuite/tests/apps/QuantumESPRESSO.py': module not found error: EESSI-test-suite/ees
si/testsuite/tests/apps/QuantumESPRESSO.py:32: No module named 'hpctestlib.sciapps.qespresso'
from hpctestlib.sciapps.qespresso.benchmarks import QEspressoPWCheck
 (rerun with '-v' for more information)ESC[0m
ESC[33mWARNING: skipping test 'EESSI_LAMMPS_lj': test has one or more undefined parametersESC[0m
ESC[33mWARNING: skipping test 'EESSI_LAMMPS_rhodo': test has one or more undefined parametersESC[0m
[==========] Running 13 check(s)
[==========] Started on Mon Aug 19 10:07:34 2024

[----------] start processing checks
[ RUN      ] EESSI_CP2K %benchmark_info=QS/H2O-32 %module_name=CP2K/2023.1-foss-2023a %scale=1_node /ae4db8cc @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_node for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /adc964f6 @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_node for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /3b8b8926 @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_node for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /fdd6aced @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_node for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /3b90ffd6 @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_node for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /f1621689 @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_node for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /4a9e965c @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_node for your scheduler.ESC[0m
[ RUN      ] EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:default+default
[ RUN      ] EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:default+default
[ RUN      ] EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:default+default
[ RUN      ] EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:default+default
[ RUN      ] EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:default+default
[ RUN      ] EESSI_TensorFlow %scale=1_node %module_name=TensorFlow/2.13.0-foss-2023a %device_type=cpu /9864d0f5 @BotBuildTests:default+default
[       OK ] ( 1/13) EESSI_CP2K %benchmark_info=QS/H2O-32 %module_name=CP2K/2023.1-foss-2023a %scale=1_node /ae4db8cc @BotBuildTests:default+default
P: time: 13.353 s (r:0, l:None, u:None)
[       OK ] ( 2/13) EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /adc964f6 @BotBuildTests:default+default
P: perf: 0.001418 s/step (r:0, l:None, u:None)
[       OK ] ( 3/13) EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /3b8b8926 @BotBuildTests:default+default
P: perf: 0.001405 s/step (r:0, l:None, u:None)
[       OK ] ( 4/13) EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /fdd6aced @BotBuildTests:default+default
P: perf: 0.001399 s/step (r:0, l:None, u:None)
[       OK ] ( 5/13) EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /3b90ffd6 @BotBuildTests:default+default
P: perf: 2.691 s/step (r:0, l:None, u:None)
[       OK ] ( 6/13) EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /f1621689 @BotBuildTests:default+default
P: perf: 2.711 s/step (r:0, l:None, u:None)
[       OK ] ( 7/13) EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /4a9e965c @BotBuildTests:default+default
P: perf: 2.604 s/step (r:0, l:None, u:None)
[       OK ] ( 8/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:default+default
P: perf: 166.451 ns/day (r:0, l:None, u:None)
[       OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:default+default
P: latency: 3.47 us (r:0, l:None, u:None)
[       OK ] (10/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:default+default
P: latency: 10.54 us (r:0, l:None, u:None)
[       OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:default+default
P: latency: 0.28 us (r:0, l:None, u:None)
[       OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:default+default
P: bandwidth: 48238.08 MB/s (r:0, l:None, u:None)
[       OK ] (13/13) EESSI_TensorFlow %scale=1_node %module_name=TensorFlow/2.13.0-foss-2023a %device_type=cpu /9864d0f5 @BotBuildTests:default+default
P: perf: 58239.572363745974 img/s (r:0, l:None, u:None)
[----------] all spawned checks have finished

[  PASSED  ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
[==========] Finished on Mon Aug 19 10:35:46 2024
Log file(s) saved in '/project/60006/SHARED/jobs/2024.08/pr_670/event_9db398f0-5e12-11ef-9aef-c19e8c12e4b6/run_000/linux_x86_64_amd_zen4/eessi.io-2023.06-software/reframe_runs/logs/reframe_20240819_100712.log'

…statements that were inserted just to debug this particular issue
@casparvl
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Try once more, after some more changes for easier debugging in the future...

@casparvl
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bot: build repo:eessi.io-2023.06-software arch:zen4

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eessi-bot Bot commented Aug 19, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:zen4 from casparvl

    • expanded format: build repository:eessi.io-2023.06-software architecture:zen4
  • handling command build repository:eessi.io-2023.06-software architecture:zen4 resulted in:

    • no jobs were submitted

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eessi-bot Bot commented Aug 19, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)

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eessi-bot Bot commented Aug 19, 2024

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_670/217

date job status comment
Aug 19 12:40:06 UTC 2024 submitted job id 217 awaits release by job manager
Aug 19 12:40:53 UTC 2024 released job awaits launch by Slurm scheduler
Aug 19 12:44:57 UTC 2024 running job 217 is running
Aug 19 13:17:08 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-217.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
Details
No artefacts were created or found.
Aug 19 13:17:08 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-217.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@casparvl
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Ok, this is better, we now also print the detected parameters and final config file. That makes for much easier debugging:

Collecting system-specific input for the ReFrame configuration file
Detected CPU count: 24
Detected socket count: 2
Detected threads per core: 1
Detected cores per socket: 12
Detected available memory: 773514 MiB
Replacing detected system information in template ReFrame config file...
Final config file (after replacements):
# WARNING: this file is intended as template and the __X__ template variables need to be replaced
# before it can act as a configuration file
# Once replaced, this is a config file for running tests after the build phase, by the bot

from eessi.testsuite.common_config import common_logging_config
from eessi.testsuite.constants import *  # noqa: F403


site_configuration = {
    'systems': [
        {
            'name': 'BotBuildTests',
            'descr': 'Software-layer bot',
            'hostnames': ['.*'],
            'modules_system': 'lmod',
            'partitions': [
                {
                    'name': 'default',
                    'scheduler': 'local',
                    'launcher': 'mpirun',
                    'environs': ['default'],
                    'features': [
                        FEATURES[CPU]
                    ] + list(SCALES.keys()),
                    'processor': {
                        'num_cpus': 24,
                        'num_sockets': 2,
                        'num_cpus_per_core': 1,
                        'num_cpus_per_socket': 12,
                    },
                    'resources': [
                        {
                            'name': 'memory',
                            'options': ['--mem={size}'],
                        }
                    ],
                    'extras': {
                        # Make sure to round down, otherwise a job might ask for more mem than is available
                        # per node
                        'mem_per_node': 773514,
                    },
                    'max_jobs': 1
                    }
                ]
            }
        ],
    'environments': [
        {
            'name': 'default',
            'cc': 'cc',
            'cxx': '',
            'ftn': ''
            }
        ],
    'general': [
        {
            'purge_environment': True,
            'resolve_module_conflicts': False,  # avoid loading the module before submitting the job
            # disable automatic detection of CPU architecture (since we're using local scheduler)
            'remote_detect': False,
        }
    ],
    'logging': common_logging_config(),
}

@casparvl
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And the actual test step for this one looks perfect:

[----------] start processing checks
[ RUN      ] EESSI_CP2K %benchmark_info=QS/H2O-32 %module_name=CP2K/2023.1-foss-2023a %scale=1_node /ae4db8cc @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_n
ode for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /adc964f6 @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_n
ode for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /3b8b8926 @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_n
ode for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /fdd6aced @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_n
ode for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /3b90ffd6 @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_n
ode for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /f1621689 @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_n
ode for your scheduler.ESC[0m
[ RUN      ] EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /4a9e965c @BotBuildTests:default+default
ESC[33mWARNING: hooks.req_memory_per_node does not support the scheduler you configured (local). The test will run, but since it doesn't request the required amount of memory explicitely, it may result in an out-of-memory error. Please expand the functionality of hooks.req_memory_per_n
ode for your scheduler.ESC[0m
[ RUN      ] EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:default+default
[ RUN      ] EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:default+default
[ RUN      ] EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:default+default
[ RUN      ] EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:default+default
[ RUN      ] EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:default+default
[ RUN      ] EESSI_TensorFlow %scale=1_node %module_name=TensorFlow/2.13.0-foss-2023a %device_type=cpu /9864d0f5 @BotBuildTests:default+default
[       OK ] ( 1/13) EESSI_CP2K %benchmark_info=QS/H2O-32 %module_name=CP2K/2023.1-foss-2023a %scale=1_node /ae4db8cc @BotBuildTests:default+default
P: time: 13.582 s (r:0, l:None, u:None)
[       OK ] ( 2/13) EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /adc964f6 @BotBuildTests:default+default
P: perf: 0.001411 s/step (r:0, l:None, u:None)
[       OK ] ( 3/13) EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /3b8b8926 @BotBuildTests:default+default
P: perf: 0.001363 s/step (r:0, l:None, u:None)
[       OK ] ( 4/13) EESSI_ESPRESSO_LJ_PARTICLES %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /fdd6aced @BotBuildTests:default+default
P: perf: 0.001389 s/step (r:0, l:None, u:None)
[       OK ] ( 5/13) EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023b %device_type=cpu %scale=1_node /3b90ffd6 @BotBuildTests:default+default
P: perf: 2.683 s/step (r:0, l:None, u:None)
[       OK ] ( 6/13) EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.2-foss-2023a %device_type=cpu %scale=1_node /f1621689 @BotBuildTests:default+default
P: perf: 2.596 s/step (r:0, l:None, u:None)
[       OK ] ( 7/13) EESSI_ESPRESSO_P3M_IONIC_CRYSTALS %module_name=ESPResSo/4.2.1-foss-2023a %device_type=cpu %scale=1_node /4a9e965c @BotBuildTests:default+default
P: perf: 2.628 s/step (r:0, l:None, u:None)
[       OK ] ( 8/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:default+default
P: perf: 166.709 ns/day (r:0, l:None, u:None)
[       OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:default+default
P: latency: 3.67 us (r:0, l:None, u:None)
[       OK ] (10/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:default+default
P: latency: 10.48 us (r:0, l:None, u:None)
[       OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:default+default
P: latency: 0.3 us (r:0, l:None, u:None)
[       OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:default+default
P: bandwidth: 44334.1 MB/s (r:0, l:None, u:None)
[       OK ] (13/13) EESSI_TensorFlow %scale=1_node %module_name=TensorFlow/2.13.0-foss-2023a %device_type=cpu /9864d0f5 @BotBuildTests:default+default
P: perf: 59672.899852645496 img/s (r:0, l:None, u:None)
[----------] all spawned checks have finished

[  PASSED  ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)

@casparvl casparvl marked this pull request as ready for review August 19, 2024 13:44
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@boegel boegel left a comment

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lgtm

@boegel boegel merged commit d813eda into EESSI:2023.06-software.eessi.io Aug 19, 2024
@casparvl casparvl deleted the fix_testsuite_azure branch August 21, 2024 14:29
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2 participants