{2023.06}[GCC/13.2.0] STAR 2.7.11b by jpecar · Pull Request #671 · EESSI/software-layer

jpecar · 2024-08-16T08:29:17Z

I'm trying to nudge our users onto EESSI and they're starting to come back to me with what's missing there for them. STAR is the first thing, there is sure to be more in the future.

eessi-bot · 2024-08-16T08:29:22Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

eessi-build-deploy-bot-deucalion · 2024-08-16T08:29:22Z

Instance boegel-bot-deucalion is configured to build for:

architectures: aarch64/a64fx
repositories: eessi.io-2023.06-software

eessi-bot · 2024-08-16T08:29:22Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat, eessi-hpc.org-2023.06-software, eessi.io-2023.06-software

jpecar · 2024-08-16T09:23:38Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2

eessi-bot · 2024-08-16T09:23:41Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

account jpecar has NO permission to send commands to the bot

eessi-build-deploy-bot-deucalion · 2024-08-16T09:23:41Z

Updates by the bot instance boegel-bot-deucalion (click for details)

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eessi-bot · 2024-08-16T09:23:41Z

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trz42 · 2024-08-16T09:29:43Z

Initially we try building for two architectures only...

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-bot · 2024-08-16T09:29:46Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from trz42
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from trz42
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 16314, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 16315, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)

eessi-build-deploy-bot-deucalion · 2024-08-16T09:29:46Z

Updates by the bot instance boegel-bot-deucalion (click for details)

account trz42 has NO permission to send commands to the bot

eessi-bot · 2024-08-16T09:29:46Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from trz42
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from trz42
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-08-16T09:29:50Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16314

date	job status	comment
Aug 16 09:29:49 UTC 2024	submitted	job id `16314` awaits release by job manager
Aug 16 09:30:24 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 16 09:36:35 UTC 2024	running	job `16314` is running
Aug 16 09:56:27 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16314.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1723801172.tar.gz` size: 5 MiB (5420087 bytes) entries: 149 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Aug 16 09:56:27 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 18/18 test case(s) from 18 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16314.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-08-16T09:29:54Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16315

date	job status	comment
Aug 16 09:29:53 UTC 2024	submitted	job id `16315` awaits release by job manager
Aug 16 09:30:22 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 16 09:35:31 UTC 2024	running	job `16315` is running
Aug 16 10:13:49 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-16315.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1723801031.tar.gz` size: 3 MiB (3308475 bytes) entries: 89 modules under 2023.06/software/linux/aarch64/generic/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `HTSlib/1.19.1-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Aug 16 10:13:49 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite produced failures. ReFrame Summary [ FAILED ] Ran 18/18 test case(s) from 18 check(s) (1 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16315.out` ❌ found message matching `ERROR:` ❌ found message matching `[\sFAILED\s].Ran . test case`

trz42 · 2024-08-16T10:03:06Z

The job on aarch64/generic will fail with

g++ -c -I./ -std=c++11 -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/HTSlib/1.19.1-GCC-13.2.0/include  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-08-16T09:36:25+00:00 :/tmp/bot/easybuild/build/STAR/2.7.11b/GCC-13.2.0/STAR-2.7.11b/source"' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -ftree-vectorize -mcpu=generic -fno-math-errno -fopenmp  -mavx2 opal.cpp
g++ -c -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/HTSlib/1.19.1-GCC-13.2.0/include  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-08-16T09:36:25+00:00 :/tmp/bot/easybuild/build/STAR/2.7.11b/GCC-13.2.0/STAR-2.7.11b/source"' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -ftree-vectorize -mcpu=generic -fno-math-errno -fopenmp ClipMate_clipChunk.cpp
g++ -c -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/HTSlib/1.19.1-GCC-13.2.0/include  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-08-16T09:36:25+00:00 :/tmp/bot/easybuild/build/STAR/2.7.11b/GCC-13.2.0/STAR-2.7.11b/source"' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -ftree-vectorize -mcpu=generic -fno-math-errno -fopenmp ClipMate_initialize.cpp
g++ -c -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/HTSlib/1.19.1-GCC-13.2.0/include  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-08-16T09:36:25+00:00 :/tmp/bot/easybuild/build/STAR/2.7.11b/GCC-13.2.0/STAR-2.7.11b/source"' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -ftree-vectorize -mcpu=generic -fno-math-errno -fopenmp SoloFeature_loadRawMatrix.cpp
g++ -c -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/HTSlib/1.19.1-GCC-13.2.0/include  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-08-16T09:36:25+00:00 :/tmp/bot/easybuild/build/STAR/2.7.11b/GCC-13.2.0/STAR-2.7.11b/source"' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -ftree-vectorize -mcpu=generic -fno-math-errno -fopenmp SoloFeature_emptyDrops_CR.cpp
g++ -c -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/HTSlib/1.19.1-GCC-13.2.0/include  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-08-16T09:36:25+00:00 :/tmp/bot/easybuild/build/STAR/2.7.11b/GCC-13.2.0/STAR-2.7.11b/source"' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -ftree-vectorize -mcpu=generic -fno-math-errno -fopenmp soloInputFeatureUMI.cpp
g++ -c -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/HTSlib/1.19.1-GCC-13.2.0/include  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-08-16T09:36:25+00:00 :/tmp/bot/easybuild/build/STAR/2.7.11b/GCC-13.2.0/STAR-2.7.11b/source"' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -ftree-vectorize -mcpu=generic -fno-math-errno -fopenmp SoloFeature_countSmartSeq.cpp
g++ -c -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/HTSlib/1.19.1-GCC-13.2.0/include  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-08-16T09:36:25+00:00 :/tmp/bot/easybuild/build/STAR/2.7.11b/GCC-13.2.0/STAR-2.7.11b/source"' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -ftree-vectorize -mcpu=generic -fno-math-errno -fopenmp SoloFeature_redistributeReadsByCB.cpp
g++ -c -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/HTSlib/1.19.1-GCC-13.2.0/include  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-08-16T09:36:25+00:00 :/tmp/bot/easybuild/build/STAR/2.7.11b/GCC-13.2.0/STAR-2.7.11b/source"' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -ftree-vectorize -mcpu=generic -fno-math-errno -fopenmp SoloFeature_quantTranscript.cpp
g++: error: unrecognized command-line option -mavx2

It seems -mavx2 is set in sources/Makefile via

CXXFLAGS_SIMD ?= -mavx2

…si-2023.06-eb-4.9.2-2023b.yml Co-authored-by: Kenneth Hoste <kenneth.hoste@ugent.be>

boegel · 2024-08-16T14:22:58Z

@trz42 (or @jpecar) We should fix this in the STAR easyconfig itself, using something like buildopts = "CXXFLAGS_SIMD=''" (but mayking sure that $CXXFLAGS defined by EasyBuild is also picked up)

fetch updated .eb file to remove hardcoded -mavx2

jpecar · 2024-08-16T20:48:29Z

We should fix this in the STAR easyconfig itself
Done. Lets see what happens now.

boegel · 2024-08-16T21:20:31Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-bot · 2024-08-16T21:20:34Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 16329, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)

eessi-build-deploy-bot-deucalion · 2024-08-16T21:20:34Z

Updates by the bot instance boegel-bot-deucalion (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-08-16T21:20:34Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-08-16T21:20:38Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16329

failed because of a small typo in the easystack file

ERROR: Failed to parse /project/60006/SHARED/jobs/2024.08/pr_671/event_5e52d490-5c15-11ef-9666-f94e3177a019/run_000/linux_aarch64_generic/eessi.io-2023.06-software/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml: mapping values are not allowed here
  in "<unicode string>", line 19, column 14:
          options:
                 ^

the relevant lines of the easystack file are

  - STAR-2.7.11b-GCC-13.2.0.eb
      options:

the issue is the missing ':' at the end of the first line, so it should be

  - STAR-2.7.11b-GCC-13.2.0.eb:
      options:

date	job status	comment
Aug 16 21:20:37 UTC 2024	submitted	job id `16329` awaits release by job manager
Aug 16 21:20:40 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 16 21:26:42 UTC 2024	running	job `16329` is running
Aug 16 22:04:19 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-16329.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts Details No artefacts were created or found.
Aug 16 22:04:19 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite produced failures. ReFrame Summary [ FAILED ] Ran 18/18 test case(s) from 18 check(s) (1 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16329.out` ❌ found message matching `ERROR:` ❌ found message matching `[\sFAILED\s].Ran . test case`

trz42 · 2024-08-19T07:21:25Z

Repeat build attempt after fixing yaml syntax error...

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-bot · 2024-08-19T07:21:31Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16474

LAMMPS test failed with

[     FAIL ] ( 9/18) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:default+default
==> test failed during 'sanity': test staged in '/project/60006/SHARED/jobs/2024.08/pr_671/event_a4d8a290-5dfb-11ef-9947-311f137f07fa/run_000/linux_aarch64_generic/eessi.io-2023.06-software/reframe_runs/stage/BotBuildTests/default/default/EESSI_LAMMPS_lj_04ff9ece'

since this PR doesn't build LAMMPS or its dependencies the failing LAMMPS test should not block this PR

date	job status	comment
Aug 19 07:21:30 UTC 2024	submitted	job id `16474` awaits release by job manager
Aug 19 07:21:56 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 07:26:59 UTC 2024	running	job `16474` is running
Aug 19 08:04:38 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16474.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1724052528.tar.gz` size: 4 MiB (5022430 bytes) entries: 149 modules under 2023.06/software/linux/aarch64/generic/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Aug 19 08:04:38 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite produced failures. ReFrame Summary [ FAILED ] Ran 18/18 test case(s) from 18 check(s) (1 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16474.out` ❌ found message matching `ERROR:` ❌ found message matching `[\sFAILED\s].Ran . test case`

trz42 · 2024-08-19T07:56:21Z

Job 16474 should succeed. If @jpecar and @boegel agree on the easyconfig changes (see easybuilders/easybuild-easyconfigs#21200), we can build it for all architectures.

boegel · 2024-08-20T10:05:34Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-bot · 2024-08-20T10:05:37Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 16711, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)

eessi-bot · 2024-08-20T10:05:37Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-08-20T10:05:41Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16711

date	job status	comment
Aug 20 10:05:40 UTC 2024	submitted	job id `16711` awaits release by job manager
Aug 20 10:06:27 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 10:18:50 UTC 2024	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job16711.result` does not exist in job directory or reading it failed. No artefacts were found/reported.
Aug 20 10:18:50 UTC 2024	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job16711.test` does not exist in job directory or reading it failed.

boegel · 2024-08-20T16:26:42Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-build-deploy-bot-deucalion · 2024-08-20T16:26:45Z

Updates by the bot instance boegel-bot-deucalion (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-08-20T16:26:45Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 16718, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)

eessi-bot · 2024-08-20T16:26:45Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-08-20T16:26:49Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16718

date	job status	comment
Aug 20 16:26:48 UTC 2024	submitted	job id `16718` awaits release by job manager
Aug 20 16:27:40 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 16:32:42 UTC 2024	running	job `16718` is running
Aug 20 16:36:47 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16718.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1724171727.tar.gz` size: 4 MiB (5022428 bytes) entries: 149 modules under 2023.06/software/linux/aarch64/generic/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Aug 20 16:36:47 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16718.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

boegel · 2024-08-20T17:54:37Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-08-20T17:54:40Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 16719, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 16720, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 16721, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 16722, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 16723, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 16724, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 16725, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 16726, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)

eessi-bot · 2024-08-20T17:54:41Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:
- submitted job 229, for details & status see {2023.06}[GCC/13.2.0] STAR 2.7.11b #671 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- no jobs were submitted

eessi-build-deploy-bot-deucalion · 2024-08-20T17:54:41Z

Updates by the bot instance boegel-bot-deucalion (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- no jobs were submitted

eessi-bot · 2024-08-20T17:54:44Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16719

date	job status	comment
Aug 20 17:54:44 UTC 2024	submitted	job id `16719` awaits release by job manager
Aug 20 17:54:57 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 18:01:15 UTC 2024	running	job `16719` is running
Aug 20 18:04:19 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16719.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1724177011.tar.gz` size: 5 MiB (5336915 bytes) entries: 149 modules under 2023.06/software/linux/x86_64/generic/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Aug 20 18:04:19 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16719.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Aug 20 19:18:41 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1724177011.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-08-20T17:54:49Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16720

date	job status	comment
Aug 20 17:54:48 UTC 2024	submitted	job id `16720` awaits release by job manager
Aug 20 17:54:59 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 18:08:22 UTC 2024	running	job `16720` is running
Aug 20 18:11:48 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16720.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1724177423.tar.gz` size: 5 MiB (5383645 bytes) entries: 149 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/intel/haswell no other files in tarball
Aug 20 18:11:48 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16720.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Aug 20 19:19:01 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1724177423.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-08-20T17:54:49Z

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/229

date	job status	comment
Aug 20 17:54:48 UTC 2024	submitted	job id `229` awaits release by job manager
Aug 20 17:55:49 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 18:04:53 UTC 2024	running	job `229` is running
Aug 20 18:39:54 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-229.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen4-1724177204.tar.gz` size: 5 MiB (5479852 bytes) entries: 149 modules under 2023.06/software/linux/x86_64/amd/zen4/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen4/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/amd/zen4 no other files in tarball
Aug 20 18:39:54 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-229.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Aug 20 19:17:59 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen4-1724177204.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-08-20T17:54:52Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16721

date	job status	comment
Aug 20 17:54:52 UTC 2024	submitted	job id `16721` awaits release by job manager
Aug 20 17:55:01 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 18:08:24 UTC 2024	running	job `16721` is running
Aug 20 18:11:50 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16721.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1724177413.tar.gz` size: 5 MiB (5382103 bytes) entries: 149 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Aug 20 18:11:50 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16721.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Aug 20 19:19:21 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1724177413.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-08-20T17:54:56Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16722

date	job status	comment
Aug 20 17:54:55 UTC 2024	submitted	job id `16722` awaits release by job manager
Aug 20 17:56:10 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 18:11:45 UTC 2024	running	job `16722` is running
Aug 20 18:16:05 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16722.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1724177697.tar.gz` size: 5 MiB (5422620 bytes) entries: 149 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Aug 20 18:16:05 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16722.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Aug 20 19:18:01 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1724177697.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-08-20T17:55:00Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16723

date	job status	comment
Aug 20 17:54:59 UTC 2024	submitted	job id `16723` awaits release by job manager
Aug 20 17:56:12 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 18:11:47 UTC 2024	running	job `16723` is running
Aug 20 18:15:03 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16723.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1724177659.tar.gz` size: 5 MiB (5402484 bytes) entries: 149 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Aug 20 18:15:03 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16723.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Aug 20 19:19:40 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1724177659.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-08-20T17:55:05Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16724

date	job status	comment
Aug 20 17:55:04 UTC 2024	submitted	job id `16724` awaits release by job manager
Aug 20 17:56:03 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 18:09:26 UTC 2024	running	job `16724` is running
Aug 20 18:12:54 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16724.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1724177522.tar.gz` size: 4 MiB (5022473 bytes) entries: 149 modules under 2023.06/software/linux/aarch64/generic/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Aug 20 18:12:54 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16724.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Aug 20 19:18:21 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1724177522.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-08-20T17:55:09Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16725

date	job status	comment
Aug 20 17:55:08 UTC 2024	submitted	job id `16725` awaits release by job manager
Aug 20 17:56:06 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 18:09:29 UTC 2024	running	job `16725` is running
Aug 20 18:12:56 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16725.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1724177520.tar.gz` size: 4 MiB (5002993 bytes) entries: 149 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Aug 20 18:12:56 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16725.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Aug 20 19:20:00 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1724177520.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-08-20T17:55:13Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_671/16726

date	job status	comment
Aug 20 17:55:12 UTC 2024	submitted	job id `16726` awaits release by job manager
Aug 20 17:56:08 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 18:10:36 UTC 2024	running	job `16726` is running
Aug 20 18:12:57 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16726.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1724177520.tar.gz` size: 4 MiB (5026448 bytes) entries: 149 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `HTSlib/1.19.1-GCC-13.2.0.lua` `STAR/2.7.11b-GCC-13.2.0.lua` `xxd/9.1.0307-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `HTSlib/1.19.1-GCC-13.2.0` `STAR/2.7.11b-GCC-13.2.0` `xxd/9.1.0307-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Aug 20 18:12:57 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16726.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Aug 20 19:20:20 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1724177520.tar.gz` to S3 bucket succeeded

boegel · 2024-08-20T20:24:56Z

All 9 staging PRs merged...

boegel

lgtm

{2023.06}[GCC/13.2.0] STAR 2.7.11b

64d483a

{2023.06}[GCC/13.2.0] STAR 2.7.11b try 2

56b9be9

boegel added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Aug 16, 2024

boegel requested changes Aug 16, 2024

View reviewed changes

Comment thread easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml Outdated

Remove redundant easyconfigs easystacks/software.eessi.io/2023.06/ees…

d189d21

…si-2023.06-eb-4.9.2-2023b.yml Co-authored-by: Kenneth Hoste <kenneth.hoste@ugent.be>

Update eessi-2023.06-eb-4.9.2-2023b.yml

3ce0c95

fetch updated .eb file to remove hardcoded -mavx2

trz42 reviewed Aug 19, 2024

View reviewed changes

Comment thread easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml Outdated

Add missing ':' at end of line

95f9d6d

boegel requested changes Aug 20, 2024

View reviewed changes

Comment thread easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml Outdated

use more recent commit for installing STAR 2.7.11b w/ GCC/13.2.0

8ae3eed

boegel added the bot:deploy Ask bot to deploy missing software installations to EESSI label Aug 20, 2024

boegel approved these changes Aug 20, 2024

View reviewed changes

boegel merged commit 993958b into EESSI:2023.06-software.eessi.io Aug 21, 2024

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