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{2023.06}[2023a,grace] Further apps from EB 4.9.0 2023a easystack#991

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TopRichard merged 4 commits intoEESSI:2023.06-software.eessi.iofrom
TopRichard:eessi-2023.06-grace-remaining-apps-from-EB-4.9.0-easystack
Apr 3, 2025
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{2023.06}[2023a,grace] Further apps from EB 4.9.0 2023a easystack#991
TopRichard merged 4 commits intoEESSI:2023.06-software.eessi.iofrom
TopRichard:eessi-2023.06-grace-remaining-apps-from-EB-4.9.0-easystack

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@TopRichard TopRichard commented Mar 31, 2025 •
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The easyconfigs(Z3/4.12.2-GCCcore-12.3.0.eb , OpenJPEG-2.5.0-GCCcore-12.3.0.eb) added to eessi-2023.06-eb-4.9.4-2023a.yml are already dependencies of other built software packages, keeping them to stay in sync with building the new stack for Sapphire Rapids

Packages added:

ATK/2.38.0-GCCcore-12.3.0
at-spi2-atk/2.38.0-GCCcore-12.3.0
at-spi2-core/2.49.91-GCCcore-12.3.0
BeautifulSoup/4.12.2-GCCcore-12.3.0
bokeh/3.2.2-foss-2023a
cppy/1.2.1-GCCcore-12.3.0
dask/2023.9.2-foss-2023a
Gdk-Pixbuf/2.42.10-GCCcore-12.3.0
Ghostscript/10.01.2-GCCcore-12.3.0
GTK3/3.24.37-GCCcore-12.3.0
ImageMagick/7.1.1-15-GCCcore-12.3.0
JupyterLab/4.0.5-GCCcore-12.3.0
JupyterNotebook/7.0.2-GCCcore-12.3.0
jupyter-server/2.7.2-GCCcore-12.3.0
libepoxy/1.5.10-GCCcore-12.3.0
matplotlib/3.7.2-gfbf-2023a
maturin/1.1.0-GCCcore-12.3.0
meson-python/0.13.2-GCCcore-12.3.0
Pillow-SIMD/9.5.0-GCCcore-12.3.0
PLY/3.11-GCCcore-12.3.0
PyOpenGL/3.1.7-GCCcore-12.3.0
PyQt5/5.15.10-GCCcore-12.3.0
PyQt-builder/1.15.4-GCCcore-12.3.0
PyTorch/2.1.2-foss-2023a
PyZMQ/25.1.1-GCCcore-12.3.0
Qhull/2020.2-GCCcore-12.3.0
SIP/6.8.1-GCCcore-12.3.0
Tkinter/3.11.3-GCCcore-12.3.0
tornado/6.3.2-GCCcore-12.3.0
Wayland/1.22.0-GCCcore-12.3.0
Z3/4.12.2-GCCcore-12.3.0

@TopRichard TopRichard added 2023.06-software.eessi.io 2023.06 version of software.eessi.io grace NVIDIA Grace CPU labels Mar 31, 2025
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eessi-bot Bot commented Mar 31, 2025

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

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eessi-bot Bot commented Mar 31, 2025

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

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eessi-bot-trz42 Bot commented Mar 31, 2025

Instance trz42-GH200-jr is configured to build for:

  • architectures: aarch64/nvidia/grace
  • repositories: eessi.io-2023.06-software

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eessi-bot-toprichard Bot commented Mar 31, 2025

Instance rt-Grace-jr is configured to build for:

  • architectures: aarch64/nvidia/grace
  • repositories: eessi.io-2023.06-software

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TopRichard commented Mar 31, 2025

bot: build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software from TopRichard

    • expanded format: build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software

  • handling command build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software resulted in:

    • no jobs were submitted

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  • received bot command build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software from TopRichard

    • expanded format: build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software

  • handling command build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software resulted in:

    • no jobs were submitted

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Updates by the bot instance rt-Grace-jr (click for details)

  • received bot command build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software from TopRichard

    • expanded format: build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software

  • handling command build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software resulted in:

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Updates by the bot instance trz42-GH200-jr (click for details)
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eessi-bot-toprichard Bot commented Mar 31, 2025 •
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New job on instance rt-Grace-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-rt/jobs/2025.03/pr_991/13548058

date job status comment
Mar 31 13:06:48 UTC 2025 submitted job id 13548058 awaits release by job manager
Mar 31 13:07:32 UTC 2025 released job awaits launch by Slurm scheduler
Mar 31 13:08:36 UTC 2025 running job 13548058 is running
Mar 31 15:16:28 UTC 2025 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job13548058.result does not exist in job directory, or parsing it failed.
  • No artefacts were found/reported.
Mar 31 15:16:28 UTC 2025 test result
🤷 UNKNOWN (click triangle for detailed information)
  • Job test file _bot_job13548058.test does not exist in job directory, or parsing it failed.

@TopRichard TopRichard mentioned this pull request Mar 31, 2025
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TopRichard commented Mar 31, 2025

Job canceled manually after being inactive for some time, the build job will be re-triggered to see if the same behavior will be noticed

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TopRichard commented Mar 31, 2025

bot: build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software from TopRichard

    • expanded format: build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software

  • handling command build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software resulted in:

    • no jobs were submitted

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  • received bot command build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software from TopRichard

    • expanded format: build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software

  • handling command build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software resulted in:

    • no jobs were submitted

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Updates by the bot instance rt-Grace-jr (click for details)

  • received bot command build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software from TopRichard

    • expanded format: build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software

  • handling command build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software resulted in:

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Updates by the bot instance trz42-GH200-jr (click for details)
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eessi-bot-toprichard Bot commented Mar 31, 2025 •
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New job on instance rt-Grace-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-rt/jobs/2025.03/pr_991/13548442

date job status comment
Mar 31 15:19:44 UTC 2025 submitted job id 13548442 awaits release by job manager
Mar 31 15:20:32 UTC 2025 released job awaits launch by Slurm scheduler
Mar 31 15:21:36 UTC 2025 running job 13548442 is running
Mar 31 15:44:16 UTC 2025 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job13548442.result does not exist in job directory, or parsing it failed.
  • No artefacts were found/reported.
Mar 31 15:44:16 UTC 2025 test result
🤷 UNKNOWN (click triangle for detailed information)
  • Job test file _bot_job13548442.test does not exist in job directory, or parsing it failed.

ocaisa
ocaisa reviewed Mar 31, 2025
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Comment thread easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2023a.yml
- dask-2023.9.2-foss-2023a.eb
- JupyterNotebook-7.0.2-GCCcore-12.3.0.eb
- ImageMagick-7.1.1-15-GCCcore-12.3.0.eb
- Z3-4.12.2-GCCcore-12.3.0.eb
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Are these ordered properly? I just checked and Z3 is a direct dependency of PyTorch since 4.9.1. It doesn't matter really it is just an observation.

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@TopRichard TopRichard Mar 31, 2025 •
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Following steps done in : https://github.com/EESSI/software-layer/blob/2023.06-software.eessi.io/easystacks/software.eessi.io/2023.06/sapphirerapids/eessi-2023.06-eb-4.9.0-2023a.yml

We can also remove it.

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So does that mean the file name is wrong and it should be 4.9.0?

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We are using EB 4.9.4 all the way, and moving in order starting from the oldest EB versions

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TopRichard commented Mar 31, 2025

Job canceled manually after being inactive for some time

Merge branch '2023.06-software.eessi.io' of ssh://github.com/EESSI/so…
b095f82 
…ftware-layer into eessi-2023.06-grace-remaining-apps-from-EB-4.9.0-easystack
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TopRichard commented Apr 1, 2025

bot: build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software from TopRichard

    • expanded format: build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software

  • handling command build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software resulted in:

    • no jobs were submitted

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  • received bot command build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software from TopRichard

    • expanded format: build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software

  • handling command build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software resulted in:

    • no jobs were submitted

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  • received bot command build inst:rt-Grace-jr arch:aarch64/nvidia/grace repo:eessi.io-2023.06-software from TopRichard

    • expanded format: build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software

  • handling command build instance:rt-Grace-jr architecture:aarch64/nvidia/grace repository:eessi.io-2023.06-software resulted in:

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New job on instance rt-Grace-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-rt/jobs/2025.04/pr_991/13548829

date job status comment
Apr 01 13:23:47 UTC 2025 submitted job id 13548829 awaits release by job manager
Apr 01 13:24:42 UTC 2025 released job awaits launch by Slurm scheduler
Apr 01 13:25:45 UTC 2025 running job 13548829 is running
Apr 01 13:49:31 UTC 2025 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job13548829.result does not exist in job directory, or parsing it failed.
  • No artefacts were found/reported.
Apr 01 13:49:31 UTC 2025 test result
🤷 UNKNOWN (click triangle for detailed information)
  • Job test file _bot_job13548829.test does not exist in job directory, or parsing it failed.

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trz42 commented Apr 2, 2025

The build process for Highway-1.0.4-GCCcore-12.3.0 fails; it would be better to split into smaller PRs

Might be worth to double check why and for what Highway is built here. It was a dependency of some R (?) package (before summer 2024), but later (after summer 2024) we figured out that it wasn't needed as a dependency and hence the dependency to it was removed.

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lgtm

@trz42 trz42 added ready-to-deploy Mark a PR as ready to deploy and removed ready-to-review labels Apr 2, 2025
@TopRichard TopRichard added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Apr 2, 2025
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Label bot:deploy has been set by user TopRichard, which has no permission to trigger the action

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Label bot:deploy has been set by user TopRichard, which has no permission to trigger the action

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Label bot:deploy has been set by user TopRichard, but this person does not have permission to trigger deployments

@TopRichard TopRichard added bot:deploy Ask bot to deploy missing software installations to EESSI and removed bot:deploy Ask bot to deploy missing software installations to EESSI labels Apr 2, 2025
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Label bot:deploy has been set by user TopRichard, which has no permission to trigger the action

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eessi-bot Bot commented Apr 2, 2025

Label bot:deploy has been set by user TopRichard, which has no permission to trigger the action

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eessi-bot-surf Bot commented Apr 2, 2025

Label bot:deploy has been set by user TopRichard, but this person does not have permission to trigger deployments

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eessi-bot-trz42 Bot commented Apr 2, 2025

Label bot:deploy has been set by user TopRichard, but this person does not have permission to trigger deployments

@TopRichard TopRichard added bot:deploy Ask bot to deploy missing software installations to EESSI and removed bot:deploy Ask bot to deploy missing software installations to EESSI labels Apr 2, 2025
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Label bot:deploy has been set by user TopRichard, which has no permission to trigger the action

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eessi-bot Bot commented Apr 2, 2025

Label bot:deploy has been set by user TopRichard, which has no permission to trigger the action

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eessi-bot-surf Bot commented Apr 2, 2025

Label bot:deploy has been set by user TopRichard, but this person does not have permission to trigger deployments

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eessi-bot-trz42 Bot commented Apr 2, 2025

Label bot:deploy has been set by user TopRichard, but this person does not have permission to trigger deployments

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TopRichard commented Apr 2, 2025

bot:deploy label has been re-set after restarting the bot instance

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TopRichard commented Apr 3, 2025

Tarball ingested, accessible

@TopRichard TopRichard merged commit d346db5 into EESSI:2023.06-software.eessi.io Apr 3, 2025
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eessi-bot Bot commented Apr 3, 2025

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.04.03

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eessi-bot Bot commented Apr 3, 2025

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.04.03

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eessi-bot-toprichard Bot commented Apr 3, 2025

PR merged! Moved ['/p/project1/ceasybuilders/bot-rt/jobs/2025.03/pr_991/13548442', '/p/project1/ceasybuilders/bot-rt/jobs/2025.03/pr_991/13548058', '/p/project1/ceasybuilders/bot-rt/jobs/2025.04/pr_991/13548829', '/p/project1/ceasybuilders/bot-rt/jobs/2025.04/pr_991/13548958', '/p/project1/ceasybuilders/bot-rt/jobs/2025.04/pr_991/13549000', '/p/project1/ceasybuilders/bot-rt/jobs/2025.04/pr_991/13550723', '/p/project1/ceasybuilders/bot-rt/jobs/2025.04/pr_991/13549245'] to /p/project1/ceasybuilders/bot-rt/trash_bin/EESSI/software-layer/2025.04.03

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@TopRichard TopRichard deleted the eessi-2023.06-grace-remaining-apps-from-EB-4.9.0-easystack branch March 30, 2026 15:30
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