A preliminary implementation of partition covariance [WIP]#169

Merged

The9Cat merged 92 commits intodevelfrom

Nov 18, 2025

Commits on Oct 18, 2025

A preliminary implementation of partition covariance
Martin D. Weinberg
committed

Commits on Oct 19, 2025

Cleanup up bindings for new variance members
Martin D. Weinberg
committed
Implementation of HDF5 writing
Martin D. Weinberg
committed
Fix storage assignment mistake in covariance arrays
Martin D. Weinberg
committed
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
Minor updates following Copilot review
Martin D. Weinberg
committed
Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
Martin D. Weinberg
committed
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Change square to triangular allocation for storage efficiency
Martin D. Weinberg
committed
Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
Martin D. Weinberg
committed
More dimensioning consistency fixes
Martin D. Weinberg
committed
Implementation of the CovarianceReader
Martin D. Weinberg
committed
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Some docstring corrections
Martin D. Weinberg
committed
Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
Martin D. Weinberg
committed
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
More minor fixes
Martin D. Weinberg
committed
Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
Martin D. Weinberg
committed
Data was not copied to CovarianceReader internal array
Martin D. Weinberg
committed
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Generalize type detection for covariance geometry
Martin D. Weinberg
committed
Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
Martin D. Weinberg
committed
More minor fixes based on a Copilot review
Martin D. Weinberg
committed
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
Update exputil/EmpCylSL.cc

The9Cat
and
Copilot
authored
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
More minor fixes based on a Copilot review
Martin D. Weinberg
committed
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored

Commits on Oct 20, 2025

Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
Update include/EmpCylSL.H

The9Cat
and
Copilot
authored
Update expui/BiorthBasis.H

The9Cat
and
Copilot
authored
Simplify pcavar computation by separating the computation from expcoef
Martin D. Weinberg
committed
Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
Martin D. Weinberg
committed
Use Eigen reduction for totalCounts accumulation
Martin D. Weinberg
committed
Remove default value for pybind11 overloads for covariance access
Martin D. Weinberg
committed
Update expui/BiorthBasis.cc

The9Cat
and
Copilot
authored
Added particle index to accumulate() members. Fixed Cylindrical calls with pcavar
Martin D. Weinberg
committed
Update pyEXP/BasisWrappers.cc

The9Cat
and
Copilot
authored
Minor formatting changes
Martin D. Weinberg
committed

Commits on Oct 21, 2025

Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
Martin D. Weinberg
committed

Commits on Oct 24, 2025

Implemented complex covariance with the option of setting float4 complex values
Martin D. Weinberg
committed
Some minor logic fixes for EmpCylSL
Martin D. Weinberg
committed

Commits on Oct 25, 2025

Remove an overlooked debug line
Martin D. Weinberg
committed

Commits on Oct 26, 2025

Implemente HDF5 compression
Martin D. Weinberg
committed
Remove debug lines
Martin D. Weinberg
committed
Decreased granularity of HDF5 stanzas to allow the compressor to be efficient
Martin D. Weinberg
committed
Removed some debugging output; checked against original version
Martin D. Weinberg
committed
Restore 1MB as the default chunk size
Martin D. Weinberg
committed
Added Python doc strings
Martin D. Weinberg
committed

Commits on Oct 27, 2025

Fixed loop misorder in complex covariance accumulation
Martin D. Weinberg
committed

Commits on Oct 28, 2025

Remove a noisy DEBUG line
Martin D. Weinberg
committed

Commits on Oct 29, 2025

More debug output removal
Martin D. Weinberg
committed

Commits on Oct 30, 2025

Remove some unused Cylindrical parameters and update the attribute output
Martin D. Weinberg
committed

Commits on Nov 2, 2025

Add KD density estimation utility
Martin D. Weinberg
committed
Fixed a few errors in the PSPhdf5 version of the ParticleReader
Martin D. Weinberg
committed

Commits on Nov 3, 2025

Added defaults for 'verbose'
Martin D. Weinberg
committed
Fix override binding for KDdensity::getDensityAtPoint()
Martin D. Weinberg
committed
Fix up restarts of ParticleReader to restore initial file
Martin D. Weinberg
committed
Compute KDE density in real units; allow verbose flag to toggle restart message
Martin D. Weinberg
committed

Commits on Nov 4, 2025

Add sech2 toggle for gendisk
Martin D. Weinberg
committed
Change to keep gcc 15.x happy
Martin D. Weinberg
committed

Commits on Nov 5, 2025

Fix sampT default for Cylindrical
Martin D. Weinberg
committed
Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
Martin D. Weinberg
committed
Added enableCoefCovariance() member function to override the 'pcavar' and 'subsamp' config tags. Also, double checked 'subsamp' logic to enforce nonzero-sized samples.
Martin D. Weinberg
committed

Commits on Nov 6, 2025

Fix typo in enableCoefCovariance for Spherical
Martin D. Weinberg
committed
Restore the original default of TRUE for ENABLE_UTILS to allow the EXP unit tests to run more fully
Martin D. Weinberg
committed

Commits on Nov 10, 2025

Remove some cruft
Martin D. Weinberg
committed

Commits on Nov 11, 2025

Fixed halo covariance MPI type mistake
Martin D. Weinberg
committed

Commits on Nov 13, 2025

Added covariance computation for the Cube
Martin D. Weinberg
committed
Missing stanza for deducing Cube coefficients
Martin D. Weinberg
committed
More Cube updates for BiorthBasis
Martin D. Weinberg
committed
Comment in typo only [no CI]
Martin D. Weinberg
committed

Commits on Nov 14, 2025

Added pyEXP bindings for index helpers for Cube covariance
Martin D. Weinberg
committed
Expose index manipulators from Cube basis in pyEXP
Martin D. Weinberg
committed
Fix some minor doc-string typos
Martin D. Weinberg
committed

Commits on Nov 16, 2025

Typo in index bounds fixed
Martin D. Weinberg
committed
Remove unused loop variable
Martin D. Weinberg
committed
Added covariance toggle to Cube
Martin D. Weinberg
committed

Commits on Nov 18, 2025

Merge branch 'devel' into covariance
The9Cat
authored