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Added preprocessing subworkflow#6

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FernandoDuarteF wants to merge 2 commits intomainfrom
added_subworkflow
Open

Added preprocessing subworkflow#6
FernandoDuarteF wants to merge 2 commits intomainfrom
added_subworkflow

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@FernandoDuarteF FernandoDuarteF commented Feb 3, 2026 •
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Changes

  • Added FALCO and FASTP nf-core modules
  • Added PREPROCESSING subworkflow

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/fsb branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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@chriswyatt1 chriswyatt1 Awaiting requested review from chriswyatt1

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@FernandoDuarteF