Web-server for SubCons

Description

This is the web-server implementation of the SubCons workflow.
The web-server is developed with Django 2.2.7+ and Python 3.6+

This software is open source and licensed under the MIT license

Reference

The SubCons web-server: A user friendly web interface for state-of-the-art subcellular localization prediction. Salvatore, M., Shu, N., Elofsson, A. Protein Sci. 2018 Jan;27(1):195-201 PubMed

Author

Nanjiang Shu

System developer at NBIS

Email: nanjiang.shu@scilifelab.se

Installation

1. Install dependencies for the web server

   • Apache
   • mod_wsgi

2. Install the virtual environments by

   $ bash setup_virtualenv.sh

3. Create the django database db.sqlite3

4. Run

   $ bash init.sh

   to initialize the working folder

5. In the folder proj, create a softlink of the setting script.

   For development version

    $ ln -s dev_settings.py settings.py
   

   For release version

    $ ln -s pro_settings.py settings.py
   

   Note: for the release version, you need to create a file with secret key and stored at /etc/django_pro_secret_key.txt

6. On the computational node. run

   $ virtualenv env --system-site-packages
   

   to make sure that python can use all other system-wide installed packages