Fix links

CHANGELOG.md

@@ -43,6 +43,7 @@
 
 ## Bug fixes
 
+- Solves broken links in the documentation ([#137](https://github.com/SGIModel/MUSE_OS/pull/137))
 - NPV fails to align timeslices ([#135]https://github.com/SGIModel/MUSE_OS/pull/135)
 - OS case studies had obsolete output function removed ([#101]https://github.com/SGIModel/MUSE_OS/pull/101)
 - Growth constraints with destination and source region ([#96](https://github.com/SGIModel/MUSE_OS/pull/96))

docs/advanced-guide/index.rst

@@ -7,7 +7,6 @@ Advanced guide
 
    extending-muse
    further-extending-muse
-   api
 
 
 

docs/api.rst

@@ -162,9 +162,6 @@ Reading the inputs
 Writing Outputs
 ---------------
 
-.. automodule:: muse.outputs
-   :members:
-
 Sinks
 ~~~~~
 

docs/inputs/agents.rst

@@ -5,7 +5,7 @@ Agents
 ======
 
 In MUSE, an agent-based formulation was originally introduced for the residential and
-commercial building sectors :cite:`2019:sachs`.  Agents are defined using a CSV file, with
+commercial building sectors (`Sachs et al. (2019) <https://doi.org/10.1016/j.energy.2019.01.161>`_).  Agents are defined using a CSV file, with
 one agent per row, using a format meant specifically for retrofit
 and new-capacity agent pairs. This CSV file can be read using
 :py:func:`~muse.readers.csv.read_csv_agent_parameters`. The data is also

docs/inputs/commodities_io.rst

@@ -71,6 +71,6 @@ Unit
 The input data has to be provided for the base year. Additional years within the time
 framework of the overall simulation can be defined. In this case, MUSE would interpolate
 the values between the provided periods and assume a constant value afterwards. The additional 
-years at which input data are defined needs to equal for :ref:`inputs-iocomms`,  :ref:`inputs-technodata`, and :ref:`inputs-technodata-ts`.
+years at which input data for input/output commodities, are defined needs to equal for :ref:`inputs-technodata` and :ref:`inputs-technodata-ts`.
 
 Interpolation is activated only if the feature *interpolation_mode = 'Active'* is defined in the TOML file.

docs/inputs/inputs_csv.rst

@@ -10,7 +10,6 @@ Input Files
    commodities
    technodata
    technodata_timeslices
-   timeslices
    commodities_io
    existing_capacity
    agents

docs/inputs/technodata.rst

@@ -145,7 +145,7 @@ Agent_0, ..., Agent_N
    The value corresponds to the ownership of the initial stock, as defined in the :ref:`inputs-existing-capacity` for the starting year of the simulation. 
    For example, if an initial boiler stock of 10 PJ is available, this is allocated to each agent according to the "AgentShare".
 
-   In a one-agent simulation, assuming that the *AgentShare* equals to *Agent_2" for the retrofit agent, the technodata should indicate the stock ownership as follows.
+   In a one-agent simulation, assuming that the *AgentShare* equals to *Agent_2* for the retrofit agent, the technodata should indicate the stock ownership as follows.
    The modelled agent would own the total 10 PJ of the initial stock of boilers.
 
    .. csv-table:: Techno-data: AgentShare - 1 agent
@@ -169,6 +169,6 @@ Agent_0, ..., Agent_N
 The input data has to be provided for the base year. Additional years within the time
 framework of the overall simulation can be defined. In this case, MUSE would interpolate
 the values between the provided periods and assume a constant value afterwards. The additional 
-years at which input data are defined needs to equal for :ref:`inputs-iocomms`, :ref:`inputs-technodata`, and :ref:`inputs-technodata-ts`.
+years at which input data for techno-data are defined need to equal for :ref:`inputs-iocomms` and :ref:`inputs-technodata-ts`.
 
 Interpolation is activated only if the feature *interpolation_mode = 'Active'* is defined in the TOML file.

docs/inputs/technodata_timeslices.rst

@@ -43,6 +43,6 @@ MinimumServiceFactor
 The input data has to be provided for the base year. Additional years within the time
 framework of the overall simulation can be defined. In this case, MUSE would interpolate
 the values between the provided periods and assume a constant value afterwards. The additional 
-years at which input data are defined needs to equal for :ref:`inputs-iocomms`, :ref:`inputs-technodata`, and :ref:`inputs-technodata-ts`.
+years at which input data for techno-data timeslices, need to equal those for :ref:`inputs-iocomms` and :ref:`inputs-technodata`.
 
 Interpolation is activated only if the feature *interpolation_mode = 'Active'* is defined in the TOML file.