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Merged
Clare72 merged 1 commit into from
May 30, 2025
Merged

release files 2025-05-30 #259

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13,376 changes: 3 additions & 13,373 deletions fbcv.obo
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4 changes: 2 additions & 2 deletions flybase_controlled_vocabulary.obo
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format-version: 1.2
data-version: 2025-03-27
date: 27:03:2025 12:08
data-version: 2025-05-30
date: 30:05:2025 10:40
subsetdef: camcur "camcur"
subsetdef: common_tool_use "Terms to summarize typical use of a gene from one organism that is introduced into another organism primarily for use an experimental tool, rather than to study the function of the gene"
subsetdef: do_not_annotate "Term not to be used for direct annotation"
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2 changes: 1 addition & 1 deletion src/ontology/components/dpo-simple.owl
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xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/fbcv/components/dpo-simple.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbcv/releases/2025-03-27/components/dpo-simple.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbcv/releases/2025-05-30/components/dpo-simple.owl"/>
<ns:attributionURL>http://dx.doi.org/10.1186/2041-1480-4-30</ns:attributionURL>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000347"/>
<terms:creator>http://orcid.org/0000-0002-1373-1705</terms:creator>
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4 changes: 2 additions & 2 deletions src/ontology/imports/merged_import.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/fbcv/imports/merged_import.owl>
<http://purl.obolibrary.org/obo/fbcv/releases/2025-03-27/imports/merged_import.owl>
Annotation(owl:versionInfo "2025-03-27")
<http://purl.obolibrary.org/obo/fbcv/releases/2025-05-30/imports/merged_import.owl>
Annotation(owl:versionInfo "2025-05-30")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))
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4 changes: 2 additions & 2 deletions src/ontology/reports/basic-report.tsv
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<http://purl.obolibrary.org/obo/FBcv_0000096> "At the anterior tip of the egg or pre-gastrula embryo."
<http://purl.obolibrary.org/obo/FBcv_0000241> "Publication in the Chinese language."
<http://purl.obolibrary.org/obo/FBcv_0000651>
<http://purl.obolibrary.org/obo/CHEBI_17996> "A halide anion formed when chlorine picks up an electron to form an an anion." "HMDB:HMDB0000492 Wikipedia:Chloride FooDB:FDB006557 MetaCyc:CL- KEGG:C00698 PDBeChem:CL"
<http://purl.obolibrary.org/obo/CHEBI_17996> "A halide anion formed when chlorine picks up an electron to form an an anion." "Wikipedia:Chloride FooDB:FDB006557 MetaCyc:CL- KEGG:C00698 PDBeChem:CL HMDB:HMDB0000492"
<http://purl.obolibrary.org/obo/FBcv_0001324> "Phenotype that is a defect in endocytosis (GO:0006897). 'endocytosis' is defined as: 'A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.'"
<http://purl.obolibrary.org/obo/CHEBI_35701> "A compound formally derived from an oxoacid RkE(=O)l(OH)m (l > 0) and an alcohol, phenol, heteroarenol, or enol by linking with formal loss of water from an acidic hydroxy group of the former and a hydroxy group of the latter." "KEGG:C00287 Wikipedia:Ester"
<http://purl.obolibrary.org/obo/FBcv_0000067> "Restricted to unknown part(s) of a specified type."
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<http://purl.obolibrary.org/obo/FBcv_0000771> "An allele that, at some low temperatures but not higher temperatures, makes a gene product at with a novel function or expression pattern compared to wild-type."
<http://purl.obolibrary.org/obo/FBcv_0000367> "A phenotype that is a reduction in the ability of females to produce fertilized eggs as a result of mating to below 50% of wild-type."
<http://purl.obolibrary.org/obo/CHEBI_26588> "Any compound with a 1,3,5-triazine skeleton, in which nitrogen atoms replace carbon at positions 1, 3 and 5 of the core benzene ring structure."
<http://purl.obolibrary.org/obo/CHEBI_30751> "The simplest carboxylic acid, containing a single carbon. Occurs naturally in various sources including the venom of bee and ant stings, and is a useful organic synthetic reagent. Principally used as a preservative and antibacterial agent in livestock feed. Induces severe metabolic acidosis and ocular injury in human subjects." "HMDB:HMDB0000142 BPDB:1749 Wikipedia:Formic_acid MetaCyc:FORMATE Patent:CN101481304 KEGG:C00058 KNApSAcK:C00001182 PDBeChem:FMT DrugBank:DB01942"
<http://purl.obolibrary.org/obo/CHEBI_30751> "The simplest carboxylic acid, containing a single carbon. Occurs naturally in various sources including the venom of bee and ant stings, and is a useful organic synthetic reagent. Principally used as a preservative and antibacterial agent in livestock feed. Induces severe metabolic acidosis and ocular injury in human subjects." "BPDB:1749 HMDB:HMDB0000142 Wikipedia:Formic_acid MetaCyc:FORMATE Patent:CN101481304 KEGG:C00058 KNApSAcK:C00001182 PDBeChem:FMT DrugBank:DB01942"
<http://purl.obolibrary.org/obo/FBcv_0009019> "Nuclei of a single cell type have been isolated with the INTACT (Isolation of Nuclei TAgged in a specific Cell Type) strategy (Henry et al., 2012)."
<http://purl.obolibrary.org/obo/CHEBI_35479>
<http://purl.obolibrary.org/obo/FBcv_0003073> "An assay that identifies and characterizes complex carbohydrates by mass spectrometry."
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2 changes: 1 addition & 1 deletion src/ontology/reports/chado_load_check_simple.txt
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FBcv:0000680 ! abnormal proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924
FBcv:0007545 ! decreased rate of proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924
FBcv:0007533 ! increased rate of proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924
FBcv:0000680 ! abnormal proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924
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