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Merged
Clare72 merged 1 commit into from
Oct 17, 2025
Merged

release files 2025-10-17 #264

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6 changes: 3 additions & 3 deletions fbcv.obo
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@@ -1,6 +1,6 @@
format-version: 1.2
data-version: fbcv/releases/2025-08-07
date: 07:08:2025 16:23
data-version: fbcv/releases/2025-10-17
date: 17:10:2025 10:27
subsetdef: camcur "camcur"
subsetdef: common_tool_use "Terms to summarize typical use of a gene from one organism that is introduced into another organism primarily for use an experimental tool, rather than to study the function of the gene"
subsetdef: do_not_annotate "Term not to be used for direct annotation"
Expand All @@ -13,7 +13,7 @@ idspace: terms http://purl.org/dc/terms/
ontology: fbcv.obo
property_value: attributionURL "http://dx.doi.org/10.1186/2041-1480-4-30" xsd:string
property_value: IAO:0000700 FBcv:0000000
property_value: owl:versionInfo "2025-08-07" xsd:string
property_value: owl:versionInfo "2025-10-17" xsd:string
property_value: terms:creator "http://orcid.org/0000-0002-1373-1705" xsd:string
property_value: terms:creator "http://orcid.org/0000-0002-7073-9172" xsd:string
property_value: terms:creator "https://orcid.org/0000-0001-5948-3092" xsd:string
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4 changes: 2 additions & 2 deletions flybase_controlled_vocabulary.obo
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format-version: 1.2
data-version: 2025-08-07
date: 07:08:2025 16:23
data-version: 2025-10-17
date: 17:10:2025 10:28
subsetdef: camcur "camcur"
subsetdef: common_tool_use "Terms to summarize typical use of a gene from one organism that is introduced into another organism primarily for use an experimental tool, rather than to study the function of the gene"
subsetdef: do_not_annotate "Term not to be used for direct annotation"
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22 changes: 15 additions & 7 deletions src/ontology/components/dpo-simple.owl
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Expand Up @@ -14,7 +14,7 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/fbcv/components/dpo-simple.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbcv/releases/2025-08-07/components/dpo-simple.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbcv/releases/2025-10-17/components/dpo-simple.owl"/>
<ns:attributionURL>http://dx.doi.org/10.1186/2041-1480-4-30</ns:attributionURL>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000347"/>
<terms:creator>http://orcid.org/0000-0002-1373-1705</terms:creator>
Expand All @@ -24,9 +24,9 @@
<terms:description>An ontology for the description of Drosophila melanogaster phenotypes.</terms:description>
<terms:license>https://creativecommons.org/licenses/by/4.0/</terms:license>
<terms:title>Drosophila Phenotype Ontology (DPO)</terms:title>
<oboInOwl:date>07:08:2025 15:56</oboInOwl:date>
<oboInOwl:date>17:10:2025 10:15</oboInOwl:date>
<oboInOwl:default-namespace>FlyBase miscellaneous CV</oboInOwl:default-namespace>
<owl:versionInfo>2025-08-07</owl:versionInfo>
<owl:versionInfo>2025-10-17</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -64,7 +64,9 @@

<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001"/>
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<rdfs:label>term replaced by</rdfs:label>
</owl:AnnotationProperty>



Expand Down Expand Up @@ -418,7 +420,9 @@

<!-- http://www.geneontology.org/formats/oboInOwl#consider -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#consider"/>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#consider">
<rdfs:label>consider</rdfs:label>
</owl:AnnotationProperty>



Expand Down Expand Up @@ -508,13 +512,17 @@

<!-- http://www.geneontology.org/formats/oboInOwl#id -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
<rdfs:label>id</rdfs:label>
</owl:AnnotationProperty>



<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset">
<rdfs:label>in_subset</rdfs:label>
</owl:AnnotationProperty>



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4 changes: 2 additions & 2 deletions src/ontology/imports/merged_import.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/fbcv/imports/merged_import.owl>
<http://purl.obolibrary.org/obo/fbcv/releases/2025-08-07/imports/merged_import.owl>
Annotation(owl:versionInfo "2025-08-07")
<http://purl.obolibrary.org/obo/fbcv/releases/2025-10-17/imports/merged_import.owl>
Annotation(owl:versionInfo "2025-10-17")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))
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6 changes: 3 additions & 3 deletions src/ontology/reports/basic-report.tsv
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Expand Up @@ -123,7 +123,7 @@
<http://purl.obolibrary.org/obo/CHEBI_13643> "A diol in which the two hydroxy groups are on different carbon atoms, usually but not necessarily adjacent."
<http://purl.obolibrary.org/obo/FBcv_0000277> "Publication in the Spanish language."
<http://purl.obolibrary.org/obo/FBcv_0002025> "A phenotype of a population that is the death of all animals in that population during the pharate adult stage."
<http://purl.obolibrary.org/obo/CHEBI_16998> "The D-enantiomer of phenylalanine." "YMDB:YMDB00995 PDBeChem:DPN ECMDB:ECMDB20144 MetaCyc:CPD-216 DrugBank:DB02556 KEGG:C02265"
<http://purl.obolibrary.org/obo/CHEBI_16998> "The D-enantiomer of phenylalanine." "YMDB:YMDB00995 PDBeChem:DPN MetaCyc:CPD-216 ECMDB:ECMDB20144 DrugBank:DB02556 KEGG:C02265"
<http://purl.obolibrary.org/obo/CHEBI_38941> "Drugs that used to treat infestations by flukes (trematodes) of the genus Schistosoma."
<http://purl.obolibrary.org/obo/FBcv_0003005> "Makes a condition worse."
<http://purl.obolibrary.org/obo/FBcv_0000167> "Weak expression."
Expand Down Expand Up @@ -722,7 +722,7 @@
<http://purl.obolibrary.org/obo/FBcv_0000152> "A stock with one or more chromosomes (balancers) that are used primarily for their ability to preserve a stock genotype without selection."
<http://purl.obolibrary.org/obo/CHEBI_33694> "A macromolecule formed by a living organism."
<http://purl.obolibrary.org/obo/FBcv_0000492> "Mutation caused by PM hybrid dysgenesis that is induced by the higher frequency of recombination in certain male chromosomes."
<http://purl.obolibrary.org/obo/CHEBI_51052> "A thioxanthen-9-one compound having a methyl substituent at the 1-position and a 2-[(diethylamino)ethyl]amino substituent at the 4-position. Formerly used for the treatment of schistosomiasis. It is a prodrug, being metabolised to hycanthone." "HMDB:HMDB0015607 Wikipedia:Lucanthone DrugBank:DB04967 KEGG:C11715"
<http://purl.obolibrary.org/obo/CHEBI_51052> "A thioxanthen-9-one compound having a methyl substituent at the 1-position and a 2-[(diethylamino)ethyl]amino substituent at the 4-position. Formerly used for the treatment of schistosomiasis. It is a prodrug, being metabolised to hycanthone." "KEGG:C11715 HMDB:HMDB0015607 Wikipedia:Lucanthone DrugBank:DB04967"
<http://purl.obolibrary.org/obo/CHEBI_33240> "An assembly consisting of a central atom (usually metallic) to which is attached a surrounding array of other groups of atoms (ligands)."
<http://purl.obolibrary.org/obo/CHEBI_23359> "An alkaloid that is a carbotricyclic compound comprising 5,6,7,9-tetrahydrobenzo[a]heptalene having four methoxy substituents at the 1-, 2-, 3- and 10-positions as well as an oxo group at the 9-position and an acetamido group at the 7-position. It has been isolated from the plants belonging to genus Colchicum." "LINCS:LSM-6449 HMDB:HMDB0015466 DrugBank:DB01394"
<http://purl.obolibrary.org/obo/CHEBI_76731> "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on the CH-NH group of donors (EC 1.5.*.*)."
Expand Down Expand Up @@ -1505,7 +1505,7 @@
<http://purl.obolibrary.org/obo/FBcv_0007051> "A clone of somatic cells that share a mutant genotype that includes being Minute +/+ and that are part of and derived from an animal with a different genotype that includes being Minute +/- and are intentionally generated in a specific tissue of the organism."
<http://purl.obolibrary.org/obo/CHEBI_36342> "A particle smaller than an atom." "Wikipedia:Subatomic_particle"
<http://purl.obolibrary.org/obo/CHEBI_35107> "Saturated acyclic nitrogen hydrides having the general formula NnHn+2."
<http://purl.obolibrary.org/obo/CHEBI_16482> "An aromatic hydrocarbon comprising two fused benzene rings. It occurs in the essential oils of numerous plant species e.g. magnolia." "PPDB:1312 HMDB:HMDB0029751 MetaCyc:NAPHTHALENE KNApSAcK:C00001259 PDBeChem:NPY KEGG:C00829 Wikipedia:Naphthalene"
<http://purl.obolibrary.org/obo/CHEBI_16482> "An aromatic hydrocarbon comprising two fused benzene rings. It occurs in the essential oils of numerous plant species e.g. magnolia." "PPDB:1312 HMDB:HMDB0029751 MetaCyc:NAPHTHALENE KNApSAcK:C00001259 PDBeChem:NPY Wikipedia:Naphthalene KEGG:C00829"
<http://purl.obolibrary.org/obo/FBcv_0007502> "Phenotype that is any abnormality in medium-term memory (GO:0072375). 'medium-term memory' is defined as: 'The memory process that deals with the storage, retrieval and modification of information received at a time ago that is intermediate between that of short and long term memory (30min - 7hrs in Drosophila melanogaster).'"
<http://purl.obolibrary.org/obo/FBcv_0000746> "An allele that at high temperatures but not low temperatures, either makes no functional gene product, makes reduced levels of a normally functioning gene product or makes a gene product with reduced activity compared to wild-type."
<http://purl.obolibrary.org/obo/CHEBI_25512> "An endogenous compound that is used to transmit information across the synapse between a neuron and another cell." "Wikipedia:Neurotransmitter"
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