Proliferation history and transcription factor levels drive direct conversion to motor neurons

Pre-publication release:

Item	DOI
Article
Dataset

Setting data directory

We use rushd to organge our data analysis. rushd requires you to specify a data directory. After you decide where to put the data locally, create a file called datadir.txt in the GitHub repo that contains the code. The datadir.txt file will contain only the absolute path to the folder in which you placed the data.

For example, if you placed the GitHub repo in /Users/username/Documents/GitHub/article-prolif-TF-levels/ and you place the data in /Users/username/Documents/GitHub/article-prolif-TF-levels/data/, then you would place the datadir.txt file in /Users/username/Documents/GitHub/article-prolif-TF-levels/ and it should contain one line:

/Users/username/Documents/GitHub/article-prolif-TF-levels/data/

Instructions

1. Download local copy of data
2. Update datadir.txt to point to data folder
3. Use virtual environment with Python 3.9.6
4. Install packages

pip install -r requirements.txt