NEP29: Test PyGMT on NumPy 1.25

[weiji14]

Description of proposed changes

Bumps numpy from 1.24.3 to 1.25.0. NumPy 1.25.0 was released on 18 Jun 2023.

• Release notes
• Changelog
• Commits

This is in line with PyGMT's policy on NEP29 at https://www.pygmt.org/v0.9.0/maintenance.html#dependencies-policy, xref #1074.

Note that the branch protection rules at GenericMappingTools/pygmt/settings/branches will need to be changed to use Python 3.11/Numpy 1.25 instead of Python 3.11/Numpy 1.25 before this Pull Request is merged.

Supersedes #2256

Reminders

• Run make format and make check to make sure the code follows the style guide.
• Add tests for new features or tests that would have caught the bug that you're fixing.
• Add new public functions/methods/classes to doc/api/index.rst.
• Write detailed docstrings for all functions/methods.
• If wrapping a new module, open a 'Wrap new GMT module' issue and submit reasonably-sized PRs.
• If adding new functionality, add an example to docstrings or tutorials.
• Use underscores (not hyphens) in names of Python files and directories.

Slash Commands

You can write slash commands (/command) in the first line of a comment to perform
specific operations. Supported slash commands are:

• /format: automatically format and lint the code
• /test-gmt-dev: run full tests on the latest GMT development version

[weiji14]

Cool, tests pass on Numpy 1.25.0 without any warnings (see https://github.com/GenericMappingTools/pygmt/actions/runs/5328296663/jobs/9652751468?pr=2581#step:9:719).

By the way, we should bump up the minimum version of Numpy from 1.21 to 1.22 on 23 Jun 2023 according to https://numpy.org/neps/nep-0029-deprecation_policy.html#drop-schedule. Can do this in a separate PR.

[seisman]

By the way, we should bump up the minimum version of Numpy from 1.21 to 1.22 on 23 Jun 2023 according to https://numpy.org/neps/nep-0029-deprecation_policy.html#drop-schedule. Can do this in a separate PR.

@weiji14 It's time to do it!

[weiji14]

By the way, we should bump up the minimum version of Numpy from 1.21 to 1.22 on 23 Jun 2023 according to https://numpy.org/neps/nep-0029-deprecation_policy.html#drop-schedule. Can do this in a separate PR.

@weiji14 It's time to do it!

Ok, I'll open a PR for that 😄 Edit: done at #2586.