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After finishing eq with no problem after "Fixed the manual_removal referenced before assignment bug", now I have problem in a prod stage. In the first window simulation start and mdinfo.01, mdout.01, traj.01 is produced. However the "SEM of the forces" is not checked. No info about it. And then all mdout.02, mdout.03, ..., mdout.20 are produced, of course almost empty. Also rst.01 is empty. Is it an Amber problem or in the APR.py script. Any help will be appreciated.
Thanks,
Maura
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