In "ffas.sh" file: ``` ffasn $1ff.1 $2fb.2 -a > $3 mv a.txt $4 ``` `ffasMatrix.sh reference.fasta query.fasta pathToOutputMatrix pathToOutputAlignment` How "ffasn" generate the matrix and a.txt?
In "ffas.sh" file:
ffasMatrix.sh reference.fasta query.fasta pathToOutputMatrix pathToOutputAlignmentHow "ffasn" generate the matrix and a.txt?