Problems with FATCAT for a list of pairs

[wxx07]

I ran the command:

../FATCATMain/FATCATQue.pl timeused allpair.list -q >allpair.aln

and it raised an error:

Stop: FATCAT environment variate is not found

What may go wrong?

[pradeepbkarma]

You need to create FATCAT variable with its path where it is installed and export it into your PATH.

something like:
export /path_to_fatcat/FATCAT-dist
export PATH=$FATCAT/FATCATMain:$PATH
source ~/.bashrc