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Description
$ python annotate_blast_hits.py test.csv p k*********@hotmail.com
Fetching annotation for 84 accessions from GenBank...
Traceback (most recent call last):
File "annotate_blast_hits.py", line 104, in
raise err
File "annotate_blast_hits.py", line 77, in
get(ids_to_fetch, step)
File "annotate_blast_hits.py", line 51, in get
handle = Entrez.efetch(db=dbdict[db], id=ids, retmode='xml')
File "/home/katelyn/miniconda3/envs/blast_env/lib/python3.7/site-packages/Bio/Entrez/init.py", line 195, in efetch
return _open(cgi, variables, post=post)
File "/home/katelyn/miniconda3/envs/blast_env/lib/python3.7/site-packages/Bio/Entrez/init.py", line 555, in _open
handle = _urlopen(cgi)
File "/home/katelyn/miniconda3/envs/blast_env/lib/python3.7/urllib/request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "/home/katelyn/miniconda3/envs/blast_env/lib/python3.7/urllib/request.py", line 531, in open
response = meth(req, response)
File "/home/katelyn/miniconda3/envs/blast_env/lib/python3.7/urllib/request.py", line 641, in http_response
'http', request, response, code, msg, hdrs)
File "/home/katelyn/miniconda3/envs/blast_env/lib/python3.7/urllib/request.py", line 569, in error
return self._call_chain(*args)
File "/home/katelyn/miniconda3/envs/blast_env/lib/python3.7/urllib/request.py", line 503, in _call_chain
result = func(*args)
File "/home/katelyn/miniconda3/envs/blast_env/lib/python3.7/urllib/request.py", line 649, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 502: Bad Gateway